XLOC_006539 (lrmda)


Basic Information

Item Value
gene id XLOC_006539
gene name lrmda
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 16922705 ~ 17464654 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012659
GGAAGAAGTAAAGCTTTTCATACGGAGAGTAGTTTAAAAGTTTATGTTGAAAACATAAAGCTAACCTTTCAGTCTTATGCCCAGAAAAAACGTCAGTGGGAGTCTTCGTTACATGCTTCTCTCCTTCTGAACTGTCATTTGACGGCAATGGCACACAACGAGTCAATGGTTGTAGTGAATGGAAGTCAGGTGTCCTGCATTGGGCATGACTGGGAAGACATTCCAGATTTTCTTGGGACAAAATATGGACAAATGGCTAGAAGATTAGATCTCAGCTTCAACCAGCTGAGGTCACTGACAGGCCTGAAAGCGTTCAGCCAACTGGAAGAGCTGATTGTGGACAACAATCTTCTCGGAAATGACCTCCGGTTGCCCAGGTTACCACGGCTCCATACCCTAACGCTCAATAAGAACCAACTCACCGACATCGAGGCCCTGCTGGAGCATTTGGTGGAAGTGACGCCAGCCCTGGAATACCTGAGCCTTCTGGGAAACGAGGCCTGTCCCAACCAGCTGGTCAGCATGGATAAAGATGAGGACGACTATCAGAGATACAGGTACTTTGTACTACATAAGCTGACAAATCTGAAGTTCCTGGACACCAGGAGAGTGACCCAGTGGGAGCGGTCAGAGGCCCAAGCACGTGGAGCTTTCATGAAGGTGGTCAAGCCAAAAAATGACCAAGACACTGCCAGTGATACGAGGTCTGAATCCATTGCCACGCCTTACACACCACTGCCAAGAGGATCCAGAGATGCCCGGAACCATAAAGggGTTTTCACCAAGTGCCGTTATGTCTACTACGGCAAGCACTCAGAGGGCAATCGATTCATCCGCAATGACCAGCTCTGACTGACAGACAGGTCAGTGGATAGACACGCGAGGAGGATTTACAAAGATATCCTGagcatattattataaatatacatgttgCCACACGCATTTTAAGCAGCCAAACACAGCCCTCTAGTGCCGTCTGCTGAGTGTGCCTTCCCTGCCAGCTCCCATCGCTCTCGCTCCATCTGAGCCGTGCCATCCAGATTGACATGATTGCCTTTAAGCAGCCCCTGCTATGGCGCggtgacagacacacacacgctgcCCAGCGCTCGTCCTGACAGCCACGGCTCCATGATGGATTGCCTGGTCCAAATGCTGCTCTCCCCAGGTCAAAGGTCCCACCTGAGGCTTCAGGCTGCCCACACGGAAGCCCAGGATGAGCTGCTCTCAAAGTCAAAGCCAAAGTTAAAAAGAAAGATCAGGGGAAAGTGACGCTGTTGTTGTAACTTCCATTATTAATAGCGAAGCTTCTCACATGGTTTTAATTTACAGTAGACAAAGCTAATGCAGGGATAATATCAATTTGACGCACTGCAAGGCCTTCAAAAATGAAATTAACATGATTTGTGTCACCCAAATTAATAGATAAACTAAAATGAAGTTAATATtagtgtttgtttacattttttcagcctatcttaaaggaatagctcatcaaaaaaaaaaaaaaaaaa
>TCONS_00012660
CAGCGTATGACACTCCAATGCTAAGAAATGCAGTTCAGTATGATAATGCAGTGAAACATACGCTCTGAATTGCAATTTGTTGTATGTAAACACACACTTTGCCGATTTGTCCACACTTCCAGTGATTAAAACAACTGCCTTTGAATGAAACCTGCCTCTATAgctattaattattgttttttaggCTTACTTTCATGGCAAAACATCTTCGGGAGTATCTCATAGCTGAGCAGATTTGTGCAACTGAATAGTGGCGCGTGCTTCCGTCCAAGATCAGCTGACACGAGCACGCGGAAGAAAAAAAACGTCAGTGGGAGTCTTCGTTACATGCTTCTCTCCTTCTGAACTGTCATTTGACGGCAATGGCACACAACGAGTCAATGGTTGTAGTGAATGGAAGTCAGGTGTCCTGCATTGGGCATGACTGGGAAGACATTCCAGATTTTCTTGGGACAAAATATGGACAAATGGCTAGAAGATTAGATCTCAGCTTCAACCAGCTGAGTCCTGCTGGGTAAAGCATGTCTGCCTGCAGAGGTGGGAGAAGGTGCATGTTTGTGCTGTCATCGTGTGAACTCTGCAGTGGGTTTGACTGTCATGAAGAGGCTTCTTCAGGAATGGATGATCAGATGACTCCGCTGACCTGCGGCTGAACTTTGTCTGCGGTTGATTTAGGAGCCTGAGAGATCAAAGCACTGGCCGAACCTTTGCCAGGAGGATGTCGCAGTGTTAGCTTGTCAACAATAGCAGTCAGAATGAGCACTTTTGGACTAGCAAAACCCCTGCTGTTCACAACAACAGCACATTCCGGCCTTTTCTATACACTTCTGttaatgttttttgtaatgtCGCATTTTCAGGCTAGGGTTATTCTTTAGGTAATAGTTTACCGGTAAgtaatagttcaccaaaaaatgagcTGTCattatttacaattaattttaaactacattcgtgtgggtgtgtgtgtggggtgtgtgggtgtgtttgttaTAGAAAAAAGAGCATAtaaagagttcaaatgcaaaaacctttaaatgccatctgaaatgttttcCTAAAAATGACCATTTTTGTCTGCcttctatgtttatgttcagttatttcactttaaagacattgtaaaattgtaaaaaagtaaaattactgagcctcCACACAAGAGTTGGGGAAAAAAGAAACACCAAAATATCAATTGGCtttcagaggtttttgcatctgaactcttcatatggaGAAGGGTGAGCAAATACTGACCATTAAAGAGTTGGTTCAAT

Function

symbol description
lrmda Acts upstream of or within melanocyte differentiation. Is expressed in cranium; mucus secreting cell; neural crest; neural plate; and trunk. Human ortholog(s) of this gene implicated in oculocutaneous albinism type VII. Orthologous to human LRMDA (leucine rich melanocyte differentiation associated).

GO:

id name namespace
GO:0043473 pigmentation biological_process
GO:0030318 melanocyte differentiation biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-285 Acts upstream of or within melanocyte differentiation. Is expressed in cranium; mucus secreting cell; neural crest; neural plate; and trunk. Human ortholog(s) of this gene implicated in oculocutaneous albinism type VII. Orthologous to human LRMDA (leucine rich melanocyte differentiation associated).

Ensembl:

ensembl_id ENSDARG00000057166

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012659 False 1514 mRNA 0.47 7 16922705 17464362
TCONS_00012660 True 1277 mRNA 0.41 4 17365892 17464654

Neighbor

gene id symbol gene type direction distance location
XLOC_006538 NA coding downstream 43635 16868380 ~ 16879070 (-)
XLOC_006537 BX323467.1 coding downstream 614822 16307767 ~ 16307883 (-)
XLOC_006536 NA coding downstream 661132 16260651 ~ 16261573 (-)
XLOC_006535 zgc:110045 coding downstream 664857 16230556 ~ 16257848 (-)
XLOC_006534 zgc:110045 coding downstream 696393 16219082 ~ 16226312 (-)
XLOC_006540 NA coding upstream 29643 17494297 ~ 17530536 (-)
XLOC_006541 NA coding upstream 221830 17686484 ~ 17693819 (-)
XLOC_006542 vdac2 coding upstream 249642 17714296 ~ 17729474 (-)
XLOC_006543 march8 coding upstream 287212 17751866 ~ 18011208 (-)
XLOC_006544 zfand4 coding upstream 555055 18019709 ~ 18069421 (-)
XLOC_006471 BX537274.2 misc downstream 6657800 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 16096480 825904 ~ 826225 (-)
XLOC_006526 BX511166.1 non-coding downstream 1342553 15575137 ~ 15580152 (-)
XLOC_006525 NA non-coding downstream 1465081 15456676 ~ 15457624 (-)
XLOC_006551 CR932438.1 non-coding upstream 1180236 18644890 ~ 18645005 (-)
XLOC_006552 CR932438.2 non-coding upstream 1184838 18649492 ~ 18649682 (-)
XLOC_006554 CR932361.2 non-coding upstream 1250656 18715310 ~ 18715426 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G681237 NA non-coding CI01180000 null 5927417 ~ 5951874 (+)