Item | Value |
---|---|
gene id | XLOC_006545 |
gene name | washc2c |
gene type | coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007124.7 |
NCBI id | CM002897.2 |
chromosome length | 52186027 |
location | 18073211 ~ 18122333 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
symbol | description |
---|---|
washc2c | Predicted to enable phosphatidylinositol phosphate binding activity and retromer complex binding activity. Predicted to be involved in protein localization to endosome and retrograde transport, endosome to Golgi. Predicted to be part of WASH complex. Predicted to be active in early endosome. Orthologous to several human genes including WASHC2C (WASH complex subunit 2C). |
id | name | namespace |
---|---|---|
GO:0008150 | biological_process | biological_process |
GO:0003674 | molecular_function | molecular_function |
id | description |
---|---|
ZDB-GENE-060825-87 | Predicted to enable phosphatidylinositol phosphate binding activity and retromer complex binding activity. Predicted to be involved in protein localization to endosome and retrograde transport, endosome to Golgi. Predicted to be part of WASH complex. Predicted to be active in early endosome. Orthologous to several human genes including WASHC2C (WASH complex subunit 2C). |
ensembl_id | ENSDARG00000062532 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00012671 | False | 4446 | mRNA | 0.47 | 30 | 18073211 | 18119696 |
TCONS_00012672 | False | 2840 | mRNA | 0.48 | 17 | 18073613 | 18105278 |
TCONS_00012673 | False | 1069 | mRNA | 0.52 | 7 | 18076851 | 18088229 |
TCONS_00012674 | True | 1440 | mRNA | 0.47 | 13 | 18107495 | 18122333 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_006544 | zfand4 | coding | downstream | 3790 | 18019709 ~ 18069421 (-) |
XLOC_006543 | march8 | coding | downstream | 62003 | 17751866 ~ 18011208 (-) |
XLOC_006542 | vdac2 | coding | downstream | 343737 | 17714296 ~ 17729474 (-) |
XLOC_006541 | NA | coding | downstream | 379392 | 17686484 ~ 17693819 (-) |
XLOC_006540 | NA | coding | downstream | 542675 | 17494297 ~ 17530536 (-) |
XLOC_006546 | alox5a | coding | upstream | 5942 | 18128275 ~ 18174864 (-) |
XLOC_006547 | slc25a16 | coding | upstream | 56763 | 18179096 ~ 18195942 (-) |
XLOC_006548 | si:dkey-228d14.5 | coding | upstream | 210352 | 18332685 ~ 18345854 (-) |
XLOC_006549 | BX908770.1 | coding | upstream | 399160 | 18521493 ~ 18548729 (-) |
XLOC_006550 | mat1a | coding | upstream | 506587 | 18628920 ~ 18637244 (-) |
XLOC_006471 | BX537274.2 | misc | downstream | 7808306 | 10264741 ~ 10264905 (-) |
XLOC_006338 | rn7sk | misc | downstream | 17246986 | 825904 ~ 826225 (-) |
XLOC_006538 | NA | non-coding | downstream | 1194141 | 16868380 ~ 16879070 (-) |
XLOC_006537 | BX323467.1 | non-coding | downstream | 1765328 | 16307767 ~ 16307883 (-) |
XLOC_006536 | NA | non-coding | downstream | 1811638 | 16260651 ~ 16261573 (-) |
XLOC_006551 | CR932438.1 | non-coding | upstream | 522557 | 18644890 ~ 18645005 (-) |
XLOC_006552 | CR932438.2 | non-coding | upstream | 527159 | 18649492 ~ 18649682 (-) |
XLOC_006554 | CR932361.2 | non-coding | upstream | 592977 | 18715310 ~ 18715426 (-) |
XLOC_006556 | NA | non-coding | upstream | 887839 | 19010172 ~ 19016833 (-) |
XLOC_006557 | NA | non-coding | upstream | 1153840 | 19276173 ~ 19277332 (-) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01180000_05587131_05604001 | FAM21C | coding | CI01180000 | null | 5587047 ~ 5605024 (+) |