XLOC_006548 (si:dkey-228d14.5)


Basic Information

Item Value
gene id XLOC_006548
gene name si:dkey-228d14.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 18332685 ~ 18345854 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012678
GTGAAAGATGGTAAAGGACCTGTTTACATGTTACTGAGGGGTGAATATGTCAGTCAGCTGATCAAGACCTCCACTGAAGGATCACCACTGAATATAACCGGCACTTTACATTGATCTGCAAGCATCTTTCTCCAACAGTCATGGCTCTTTGGATTATTTTACCTGTTCTTTTGTGTGCTGTCTCATTCATCGGCTGCTGGACAGTATATGGACTTGCATTAAGTTACAATCATATCTGCTCTCTTAATACCTGGGAATATAGAAACTCCTGTCATCCGAATGAAACGGGGAATTGCTGCACGATGAACAACATCCCCACTGTTAGCGCAAGTGGAACAAACTTTCCGGAAAACTCGCTTTTCACAGCAACAATCAGTGCTGGGTCATTTCTATTTCTGGTTTTCTGTGTTTTCCATCACGCACATATTCTGGATAGAAACAGCGTTCATTCTCTTCTCAGTAAGATTGCTCTGATTATGGGCTGTGTGGTGTCTGCGAGCGCTTTCATGGCTGGCAACTGCAATCCGGCAGAGCTTGTGTTGCTCCATTATCTGGGTGCTGCAGtgagctttgtgtttgtgtgcctgTACATGATCATCCTGACCTCGCTCACCACTAGATGTATGCTGACGGGCTGTGAACAGGTTCTCTACCCACTACGCATCATCTTAACCATCATCCAGGTTTCTGCCACCATCCTCTATGGCATTTTCTTCATCCAGGAGCATTACTTCTACAAGCAGATCTCAGCAGTGTTCGAGTGGTTTCTGTGTGTCAATCTGGAGCTCTACGAACTCAGCTACAGCGTAGAGTTTTACTTCTTCTCCTCATCGATGCTCTCAGTGCTTCTAGCCAAGAAAGAAGAGGAGAAACCTCTAATTTTATCTTAATCACTAGGAACTTTAGTTTTTGTTAGTGTTTCTTTTGTCCTTTATGGGTTTAAATAGATGCCCTTTTAAAATGTAACCTCATAAGGTTGACTCAGGAGACGTTTGAAGACTTTCACATCATTTTGAATGCACACTAAAGACCCTTTGAGACCGCAAGCACTGGATTCACTTTggagctttttttgtttttactccaAGTGGAGCAACAGGCACTTTGAAGTTCCTAagcatttttacttttgaaatgGTATATAATACCATACAGGTGCAATATTTGACCTGATATCTAGATTTCCTGTGCGGTAGGGTAACTCGGTTGGCTCATGCAGCTTAAACGATTGTTCAGTGTTTACCTCAGGCTTTTAATCTAATCGTTCAGGCCCCTGAAAATGTAGAATCAGCTGCTGGCCGGATATGTTGTCAAAACTGAAAGTGCCATATAGAAAAAAGATAAGAATGACCCAGTCATAGGTTTAtctcaaattaaattatttgccattATCTTTTTGTATTGTGTTGGTATTTCAATTTCGACTGttgatcaggggtgcccaaactttttcactTAAAGgatcaaaaacaaaacatcattgagagccatgggctgaaggtaaatacaCCAAACTACGTTACATTAAAGTCGGCATGggtaatttccttatttattaaataatttttcaaaattaatAGAAAACGTCACTTTATATCATTTAACCTAATGCAGTGTAACGTTTTAAATGAGAACTTATTAACAATAAAAgcataatcacatttataa

Function

symbol description
si:dkey-228d14.5 Predicted to be involved in protein localization to plasma membrane. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0010506 regulation of autophagy biological_process
GO:0005764 lysosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-252 Predicted to be involved in protein localization to plasma membrane. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000057440

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012678 True 1668 mRNA 0.40 7 18332685 18345854

Neighbor

gene id symbol gene type direction distance location
XLOC_006547 slc25a16 coding downstream 136743 18179096 ~ 18195942 (-)
XLOC_006546 alox5a coding downstream 157821 18128275 ~ 18174864 (-)
XLOC_006545 washc2c coding downstream 210352 18073211 ~ 18122333 (-)
XLOC_006544 zfand4 coding downstream 263264 18019709 ~ 18069421 (-)
XLOC_006543 march8 coding downstream 321477 17751866 ~ 18011208 (-)
XLOC_006549 BX908770.1 coding upstream 175639 18521493 ~ 18548729 (-)
XLOC_006550 mat1a coding upstream 283066 18628920 ~ 18637244 (-)
XLOC_006551 CR932438.1 coding upstream 299036 18644890 ~ 18645005 (-)
XLOC_006552 CR932438.2 coding upstream 303638 18649492 ~ 18649682 (-)
XLOC_006553 sfxn3 coding upstream 331574 18677428 ~ 18695289 (-)
XLOC_006471 BX537274.2 misc downstream 8067780 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 17506460 825904 ~ 826225 (-)
XLOC_006541 NA non-coding downstream 638866 17686484 ~ 17693819 (-)
XLOC_006540 NA non-coding downstream 802149 17494297 ~ 17530536 (-)
XLOC_006538 NA non-coding downstream 1453615 16868380 ~ 16879070 (-)
XLOC_006537 BX323467.1 non-coding downstream 2024802 16307767 ~ 16307883 (-)
XLOC_006536 NA non-coding downstream 2071112 16260651 ~ 16261573 (-)
XLOC_006554 CR932361.2 non-coding upstream 369456 18715310 ~ 18715426 (-)
XLOC_006556 NA non-coding upstream 664318 19010172 ~ 19016833 (-)
XLOC_006557 NA non-coding upstream 930319 19276173 ~ 19277332 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_05460865_05464029 NA coding CI01180000 null 5460865 ~ 5464533 (+)