LOC122351471


Basic Information

Item Value
gene id LOC122351471
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5025563 ~ 5028639 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU100434
AACCACAAACTCTTCAGTGGAGGAAGATGAAGACAACACTCACTCTGCTCCTAATCATGGAGCTCTGCGGACTCTCCTCCGGTCTCATTAAACGACATTTCTTTGTGAAAAAGGAGATGACATGGGATTCTGCGCATAGCTACTGTAATGTATTCTTTCACGACCTCTCCACCTTCATCAATGAGCTCGAGCAACAGCAGTTTTTGCAAGATGCAGCCAATCAAACTTCAAACGCCTGGGTTGGACTCCACACAGAATTAGGAGTCTGGAGGTGGTCTGGAGGTCAAACAGCAACAGAAATTTTGTGGGATAC
>XM_043248547.1
tattttatttcagcttttgcctttAACATTTGCATTATCTCAGGCTCAGGTTTACAATAATCCCTTTGAAGTCACTTTTACAAATAGtcatagcatttattttttatcttatttggcAAACTGCTGTTATTATTACATCAATATTCTAAAACTACGTGCATTGAAAACACCCGCTTTAGCAAATAATTCaccaacacaaaaaaattgctctttttctcctctgttGCACTGCTTTTGTAATCTAGGATAGCACTATTTGTCTCCATTTAATTCCTCCTGTAACCGCATTAATTCcttctgcttttattattaaaatgaaatgcaaacgaTGTAGTTATCTTCAAAGATTTAGGCAGCTGTAGCCCCAGAGCTCAGCGCCTGTGCGTTTAGCCACCACTGAATGCGTGCACTGAGATTTATTATTGTCAAATGCAAACGattttctgcttatttaaatggtattaaagttttgtttaacTAATTTccatttctaaaaacaaatcatgtgTTCTGTAATACAGTGAGCGAAAAAGAGACATTGCTATTATGACAAATTTTAGTGgtcaaattttcatttcttttttcaaaaagtcacattttttgtatttatacacgtttcttttttatttatcgtACTATCACATGCACGAGatagagtattttttttttatccttgttTGAGAACTGCTTGTGATAAGGGTTAGGGTGAATTGAGATTGATTTGGGATATTTTTTCCAAGTCATTTCAATGACAAAAATCATCCCAATCAACCCGAATTTACGTTATATCGCTGCGAATAAAAAGCAAACCGTACATTTGcgtatttttcaaaaattgtagtaagtaaaacaacaacaacaacaacaatcacTTATGCATTGGTTGAGCGCAATGAAATTGTGACAAAATCTTGGAAAAATAAGAATTggctttcatttgttttaaatacgtTGGGGCATTCTTTGAGTCCGTGTTTCGTGCCATATTTggcttctttaaaatattatgagGTTTATTTGACTGGTGAAATGCACCTGTTTTGTCTGTAAAGgtgtgctgtgattggtcaCACCATCACTCCCATTTGTCATTGGCTGTATGTCCAAGTAAAAGAGAGTCAGTGTCATCTTGTACATTTCTGTCGTCAATAACCACAAACTCTTCAGTGGAGGAAGATGAAGACAACACTCACTCTGCTCCTAATCATGGAGCTCTGCGGACTCTCCTCCGGTCTCATTAAACGACATTTCTTTGTGAAAAAGGAGATGACATGGGATTCTGCGCATAGCTACTGTAATGTATTCTTTCACGACCTCTCCACCTTCATCAATGAGCTCGAGCAACAGCAGTTTTTGCAAGATGCAGCCAATCAAACTTCAAACGCCTGGGTTGGACTCCACACAGAATTAGGAGTCTGGAGGTGGTCTGGAGGTCAAACAGCAACAGAAATTTTGTGGGATACTAATCAACCAGACACATCTGATGGCTGTGTTTTTCTACACATTGACCGTAAGAAACTGCACGACAAAGATTGCACAGTTCAATTTGCCGCCTTCTGCATGACAAACTTTGTTCTGGTGCCTCAGAAAGAGACCTGGGAAGGAGCTCTGGAATACTGCAAGACTTATTATATTGAACTGGCAACTCTGAGCACAGTGCAAAGGATGAACTCAGCTTTAATGGAAATCTCACAGGCTGAAACCGAATATGTGTGGATTGGTCTGCGTTTTCTAGAAGGAGACTGGCTCTGGGTCAACAGAAATCATCTTTACTACACAGCCTGGTATCAGAACGAACAGCCCCAGTGTCCTGCAGGAGACCTTCGCTGTGGAGCCCTggacaagaaaacaaagctTTGGACAAACAGAAACTGTGAGGAGAAGCTCagcttcatttgtctttttcattaaaacaaaccaatttatgaaaaaccaaaaaggtaatgttttctaaaaatattataccCTTGTTTAAGAACAGAGTCAAAGCGAacttggcatttaaaaaaaactaacccTCATCTTCTAAAGTCCATCAGAGACAATAATTCTTCTCCACTCTATCAtaacttataaaaatatatatagtagtgctgtaaatttaaatttttttgtattacatatgcatgtgtactatatatatagtattttattttatttttttttgtttttttcaagtcAAACCGTTGTAGTCTGTCAGTTATAAAATGGCCGGTAACCACTGTAACCACTCGTTTGGTGTCTTAGGCCATCAATGTATCGTTACGATGGGGTTTGGTTTAATTTGATTTTTctatgcaagtttttttttcctcccataGAAAAATCCCCCTATACCGGCCATTATATGACAGACTACAATggtttgacttaaaaatctcaaaattggatataaataagaaagaaaagacaCCTACACCTTAAATGCTCTTGGGGTAAGCGGATACTgttcaaattttaatttctaagtgaactatccctttaaagcagAGGAGAAGCACATTTCAAAAGGAGGAAAAGGCTCTAGACACAGTTTGTGATACTGCCCTCTCCTGGTTCCTCAACTCCACTGCAACAATCCTGACAATCACACAGCGGCTCCCAACCACCAGAGAAGTCTCCAGAGCTAACATAATATAGGAATAGGGCtcttgtgcatttatttattttttgttgtgatGCTTACTGATGCACAATGGTGCTCCATAGTTGTGTCCTGTGTTTCTACCTTATAACCTTCTACCTTTCTATACCTTATAATGGCCATAATTTTATAAACATAGCCATTTACCTGATAAAGGCTTTAAAAAACTACATCAGATAACATGAAAATGCCTTCAAGACGTTTTTCGAAGACGGCTTCCTTCAAAGATTTATTCATAGAAAAACCTGAATTTGCGAGAATGAGAAAAGTTAAAAAGGAAAGTCCACTGATGAGTTACCTGAGTAGACTATAATGTAGCATTTACATACAACTCTATTTTGTCATGCATGCgcttaacaaattaaaaagttcTTCTGATTGGTCTTTGCATCATGTGTGATTGTTATAATGCacaatgctgtaaaatgagtaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100434 False 313 lncRNA 0.46 1 5026713 5027025
XM_043248547.1 True 3077 mRNA 0.36 1 5025563 5028639

Neighbor

gene id symbol gene type direction distance location
LOC122351196 sctr,LOC107549745,LOC107747236,LOC107752604,LOC107670318,LOC107560812,LOC107689516 coding upstream 18767 4992313 ~ 5006796 (+)
LOC122351440 ino80d,LOC107747229,LOC107752578,LOC107670308,LOC107561721 coding upstream 172424 4840938 ~ 4853139 (+)
cmklr2 LOC107752611,LOC107670314,LOC107560810,LOC107689523,LOC107747228,LOC107670312,LOC107561727 coding upstream 195697 4825378 ~ 4829866 (+)
osbpl6 osbpl6,LOC107670309 coding upstream 253349 4720555 ~ 4772214 (+)
si:ch211-222f23.6 LOC107657380,LOC107716910,LOC107571834 coding upstream 319426 4702686 ~ 4706137 (+)
LOC122351173 LOC107670300,LOC107720934,LOC107576887,LOC107549889 coding downstream 29924 5058563 ~ 5059629 (+)
c1ql2 c1ql2,LOC107670317,LOC107689526,LOC107549752,LOC107752616,LOC104939125 coding downstream 38184 5066823 ~ 5069325 (+)
marco NA coding downstream 65603 5094242 ~ 5099376 (+)
en1a LOC107670337,LOC107720935 coding downstream 77211 5105850 ~ 5108390 (+)
usp37 usp37,LOC107670323,LOC107549772 coding downstream 99498 5128137 ~ 5138150 (+)
G67872 NA non-coding upstream 201 5022240 ~ 5025362 (+)
G67867 LOC107752614,LOC107689494,LOC107747239,LOC107670320,LOC107560813 non-coding upstream 14126 5006890 ~ 5011437 (+)
G67865 NA non-coding upstream 14359 4999928 ~ 5011204 (+)
G67826 NA non-coding upstream 71482 4899485 ~ 4954081 (+)
G67812 NA non-coding upstream 154681 4870185 ~ 4870882 (+)
LOC122351367 NA non-coding downstream 21811 5050450 ~ 5052148 (+)
G67882 NA non-coding downstream 55404 5084043 ~ 5084301 (+)
G67888 NA non-coding downstream 72720 5101359 ~ 5101664 (+)
G67955 NA non-coding downstream 268016 5296655 ~ 5297005 (+)
G67961 LOC107689507,LOC107670332,LOC107752589,LOC107549740,LOC107549921,LOC107730419 non-coding downstream 278379 5307018 ~ 5313560 (+)
c9h2orf76 zgc:101851,cunh2orf76,LOC107670315,LOC107747242,LOC107560816,LOC107752580,LOC107549781,LOC107689495 other upstream 7225 5015470 ~ 5018338 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other upstream 308330 4709053 ~ 4717233 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other upstream 462961 4523286 ~ 4562602 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other upstream 612403 4409895 ~ 4413160 (+)
G67630 NA other upstream 803392 4141054 ~ 4222171 (+)
ndufb3 ndufb3,LOC107752587,LOC107549774,LOC107549916,LOC107689503,LOC107720946 other downstream 111506 5140145 ~ 5142152 (+)
trnar-ccu_4 NA other downstream 376590 5405229 ~ 5405301 (+)
trnar-ccu_5 NA other downstream 377264 5405903 ~ 5405975 (+)
trnar-ccu_6 NA other downstream 378837 5407476 ~ 5407548 (+)
trnar-ccu_7 NA other downstream 379610 5408249 ~ 5408321 (+)

Expression


Co-expression Network