G67979


Basic Information

Item Value
gene id G67979
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5373409 ~ 5392379 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU100572
GGCTTGAGTttacttttcctttttataagTATTCTGAAGTCATACAATCTTTATATGATGAACAGacctaaatattatatacactgACAATCTTAAGTCAAATTAGtcagaaaagtcaaaattgagCATTACTgatatataaacacagacacactgtcactttttttttttttttttttttttCTTGAacaatattctttattttatagaaGTCAAGACAAAAAGTTAAGTCACAATGGTGATACGGTGCATAAACATCCAGAACAATTTCAAATACCTTAAGGCATTTAAACAAGTTATTAAATGGCTTATTCTTTGAAAATGACTGCAACCCTCAAAAGGTAACAATTCTTGcttaaaaagactttaaaaacagGTCATGTTAGCTAGACAAGGCAACTTTACTACAAAAGAACAATCAGAACTTCGTTTCTCATTTCAGAACGAAGCATCCTGGCTTCAGTCTCAGTCAGTTTCCTCTTCAGACTCAGATTCTGAAACAAGAGCATAGTTGTTTTAATACACGACAAAGAAACAATCATGTTTAACCGTAACAATGATACTCACCCTCTTCAGCATTTTTCAACCATTCCACAAACTTCTTCATCTGCTCCAGGAAGACACTCTTTCCTTTGGCTAGGTGAGCTTCAGTATACCACTTAAGAACAGCCTCTTCACTTAAAACATCCACTAAAGAGTGGAGGAACAAATGGTTTAGCGTAAATCCTAATTAAACCTCCCTAGAGTAACAGATTCATCACTTGAGAAACGCTACCTTTATAGAGCAGCAAAACGATCTTCTGGAAGGCTTTCATGAAGTGTATGTTGTCATAACAGTACTCTTGAACTCTTAGCAGCAGAGTGAGCTCAGACAGGCCCTGTGTGGTGAAGGCCTTCAGGAGGGGGCTGTGTTGctaagaaacagaacaaaataaataaataaatgaataaataaatatcaggaATAATAGTTGGTCATAATCCCCAACAAGGCCACTGCTATTAATTGATAAACTGGTCCTCAGTGAGACCGAGTCTAAAAGCTGCGATTACTTTCTTCCATGCTTACCTTCAAGTGTTTAATGGCTTGTTCAGTGACCAGTTCCTCTTTCTTATTCCATTCAACTGAGCTCATGACACTGGTCCACATGATACCAATCATCATCTGCTCAGAGATACCGCTCTTCTTCATTTCTTCCTTGCCATACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100572 True 1211 lncRNA 0.36 2 5373409 5392379

Neighbor

gene id symbol gene type direction distance location
LOC122351829 LOC107670324,LOC107577992,LOC107578707 coding upstream 225238 5142408 ~ 5148171 (+)
usp37 usp37,LOC107670323,LOC107549772 coding upstream 235259 5128137 ~ 5138150 (+)
en1a LOC107670337,LOC107720935 coding upstream 265019 5105850 ~ 5108390 (+)
marco NA coding upstream 274033 5094242 ~ 5099376 (+)
c1ql2 c1ql2,LOC107670317,LOC107689526,LOC107549752,LOC107752616,LOC104939125 coding upstream 304084 5066823 ~ 5069325 (+)
c9h3orf38 LOC107549925,LOC107730394,LOC107664011,LOC107728235,LOC107676993,LOC107549751 coding downstream 131181 5523560 ~ 5527595 (+)
LOC122351927 epha3,LOC107738584,LOC107676997 coding downstream 236743 5629122 ~ 5732070 (+)
LOC122351459 dip2a,LOC107752588,LOC107720936,LOC107670331 coding downstream 424466 5816845 ~ 5865374 (+)
LOC122351464 LOC107752607,LOC107720938,LOC107689504,LOC107549742,LOC107549895,LOC107576878 coding downstream 591510 5983889 ~ 6002637 (+)
LOC122351517 NA coding downstream 610396 6002775 ~ 6004352 (+)
G67970 NA non-coding upstream 32120 5338969 ~ 5341289 (+)
G67961 LOC107689507,LOC107670332,LOC107752589,LOC107549740,LOC107549921,LOC107730419 non-coding upstream 59849 5307018 ~ 5313560 (+)
G67955 NA non-coding upstream 76404 5296655 ~ 5297005 (+)
G67888 NA non-coding upstream 271745 5101359 ~ 5101664 (+)
G67882 NA non-coding upstream 289108 5084043 ~ 5084301 (+)
G68013 NA non-coding downstream 75162 5467541 ~ 5562170 (+)
G68056 NA non-coding downstream 354476 5746855 ~ 5764874 (+)
G68058 NA non-coding downstream 373960 5766339 ~ 5768260 (+)
G68069 NA non-coding downstream 403715 5796094 ~ 5797492 (+)
G68085 NA non-coding downstream 441761 5834140 ~ 5914281 (+)
ndufb3 ndufb3,LOC107752587,LOC107549774,LOC107549916,LOC107689503,LOC107720946 other upstream 231257 5140145 ~ 5142152 (+)
LOC122351471 NA other upstream 344770 5025563 ~ 5028639 (+)
c9h2orf76 zgc:101851,cunh2orf76,LOC107670315,LOC107747242,LOC107560816,LOC107752580,LOC107549781,LOC107689495 other upstream 355071 5015470 ~ 5018338 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other upstream 656176 4709053 ~ 4717233 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other upstream 810807 4523286 ~ 4562602 (+)
trnar-ccu_4 NA other downstream 12850 5405229 ~ 5405301 (+)
trnar-ccu_5 NA other downstream 13524 5405903 ~ 5405975 (+)
trnar-ccu_6 NA other downstream 15097 5407476 ~ 5407548 (+)
trnar-ccu_7 NA other downstream 15870 5408249 ~ 5408321 (+)
trnar-ccu_8 NA other downstream 16605 5408984 ~ 5409056 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G513947 NA non-coding NC_048570.1 CM023224.2 46171271 ~ 46171612 (-)
striped catfish (Pangasianodon hypophthalmus) G368282 sh3bp4,LOC107389529 non-coding NC_047619.1 CM018565.1 18764525 ~ 18839580 (-)