LOC122351915 (LOC108191338,LOC101883771,LOC101885620)


Basic Information

Item Value
gene id LOC122351915
gene name LOC108191338,LOC101883771,LOC101885620
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5396865 ~ 5399880 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU100600
ATAAAGTTTGTTAATTCATACACCTGCAATAGTAAAAGGgatttcagtttgtttatttgaatatatcggttgatttatgtattttgtatgtttcagttTCACCTTTCCTCACAACGTCAATAAACCTGTGGACGAGGAGCTTATGTCTTCAGAGTCTTGATGTTAGGGAAAAGTTTACCTGGCTGTCACGTTATATCCAGTACATATAGCAAGGGCAGCACAAGGCCACTGGTGCAGACATGCAGCTACTCAGttgtccaattaatttttttcttacacagacttcctttgccaaagaaagagtcttctagatgagcatAAGCTCTGAATTCACCACCTATTTCCTTTATATTTCACTATTGACCTGCCGTAGCtcagaactgtaaagaaggtaaCGCAtattagcagaggatggtttcgatccatcgacctctgggttatgggcccagcacgcttccgctgcgccactctgctgttttgccCTTGTGCgttgaaagagccttctgaattaacacatgctatgaaatcacag
>TU100602
TGGCGGCAAGTTCAACACCTTTCGAACACATTCTGGGACAGATGGAGGAAGCAATTTATACCAACTCTACAACCACGCAAAAAATGGCAGTCCGTTCAACCAAATGTCGTACCAGGAAGTGTTGTCCTTCTCAAAAATAGCCAAGTACAATGGAATGAATGGCCTCTTGGACTGGTAACACAGACTTTCCCTAGTCAAGATGGAAAGGTGCGTCAAGTTGAGGTGAAGGTCATCAAACCAGGAGGCTCGTCCCTTTTTCTTAGGCCTGTTACAGAGATAGTGTTTCTACTTCCACCAGATTCTAAAGTAAATGCAtaatcattaatgttttttgagtGATGTGTACTCACATCAGGCGGGGAGTGTTCTGTTATCTTTaacatgtttattgtttaatctGAGACTTTCCTTTATGCCTTTCGTTATTTGGTCGTGGTCCCTTTAAGAATCTTAGGTTTCGGTATAGAGTTATGCCATGTGATTGAGGAAGCGAGCATGTTCAGCAGAGAGTAGCTTTCGTAGCATTTTTTTGAAGCTTACTGTTATATTGCATACTTCTTGCATCTGTTTTAGCATCGTGGGTATGTATTGACTGTTTTTAGCGATTGCTGAGCATTACTTTAAGACCGTGTTACATTTATGAAGCTTATGGTTCGAAGCC
>XM_043249331.1
ATCACAGATGCTGCAGGAAATATTCAGATTGGTTTTGTGATGGGAAAAGCCAAACTTGCGCCCCGGCCCGAGCACACTGTGCCAAGACTTGAACTTTGTGCAGCAGTTCTTGCAGTCGAGTTTGCAGACTTAATTTCTGCAGACCTTGACCTTCAGCTTGATGCTATAACCTATTACTCAGACAGTAAGGTGGTTCTCGGGTACATTTGTAATGAGACCAGACGTTTTTACGTTTATGTCAGCAACCGGGTACAACGTATCCGAAGGTCATCCAATCCAGATCAGTGGCAATATGTGCCTACAGACCAAAACCCGGCAGATCATGCAACGCGTTTTGTACCCGCAGCCCATTTACAAAACACCAGTTGGCTAAGTGGACCCAAATTTCTGCTCAGGCCAGAATCAAGTACCTCTGCAAGCACTTTCAACCTTGTTGATCCAAGTTCAGACCCAGATGTACGTCCTCTAGTGTACACTTTAAGCACTGCCGCATTATCCAAGCAACTGGGTTCCCAGAGATTTGCCAAATTCTCTTCTTGGAAGTCACTAACAGGAGCCATCACTCGCCTTATTCACATAGCTCGTCATTTCAAGACAACTGGGAAGGAAAACAGTTCCTGTAAGGGATGGCATTACTGCAAAGCTGAATTCAATGTAGAGGAATCTGATAAAGCTTCAGCAATTGTAATCCAAGCTGCACAAGAAGAGGTTTACAGTCAAGAGATCAAATGTATCCAAAAGCAAGAAAGGATTCCTAAAAGTAGTCCTCTTTATACTCTGGATCCTTTCATTGATGCGCAAGGAATTCTTAGGGTCGGAGGTCGTCTCCATCGAGCAAGCTTTGAGCAGAATATAAAAACTCCTTTGATAATTCCAGGCAAGCATCACATTGCTACTTTGCTCATTAGACACTATCACGAGTGTATCCACCATCAAGGCCGCCACTTTACAGAAGGAGCTGTCCGCGCAGCCGGCTTTTGGGTAGTTGGTGGAAAACGTAGGGTGAGCAGCATCATAAGTCAATGTGTAACTTGCAGACGGCTCAGAGCTCCACTCAGCATCCAGAAGATGGCAAACCTTCCAGTAGATCATCTCACAACAGACCCTCCCTTTACCAACATTGGACTGGATGTGTTTGGCCCTTGGAGTGTCTCTTCACGTCGGACGAGAGGAGGTTTTTCTCTCAGCAAGAGGTGGGCtgtaatttttacatgtatGAGCGTAAGAGCTGTTCACATTGAAGTTATAGAATCCCTCGACACATCCAGCTTCATCAATGCTCTTAGACGTTTTCTTGCTGTGCGGGGACCTGTCAAACACATTCGTTCAGACCGTGGCACAAACTTTGTTGGTGCATGTAAGGACTTAAAGATACCTTCAAACATTGACATTAAGACAGTGAAGAGGTATCTGTCAGACCAAAGCTGCAATTGGACTTTCAATCCACCGCATGCTTCCCTTTGCGGTGGAGCATGGGAAAGAATGATTGGAATAGCAAGAAGAATTCTCGATTCCATGTTCCTCCAGTTGAAAGACAAACTTACCCACGAGGTGCTTGTAACCTTCATGGCAGAGGTAGCAGCCATTATCAATGCCAGACCCCTTGTTCCCGTGACTACGGACCCTGATGAGTCGTTCATGCTCACCCCTGCAGCTCTTCTCACTCAAAAGGTGACCTCTGTTGCTGCACCGGCAGGCGAGTTTGGAGTTGCAGATCTGGCACTTGTACTTGCACTTGATCTGGCGGCAAGTTCAACACCTTTCGAACACATTCTGGGACAGATGGAGGAAGCAATTTATACCAACTCTACAACCACGCAAAAAATGGCAGTCCGTTCAACCAAATGTCGTACCAGGAAGTGTTGTCCTTCTCAAAAATAGCCAAGTACAATGGAATGAATGGCCTCTTGGACTGGTAACACAGACTTTCCCTAGTCAAGATGGAAAGGTGCGTCAAGTTGAGGTGAAGGTCATCAAACCAGGAGGCTCGTCCCTTTTTCTTAGGCCTGTTACAGAGATAGTGTTTCTACTTCCACCAGATTCTAAAGTAAATGCAtaatcattaatgttttttgagtGATGTGTACTCACATCAGGCGGGGAGTGTTCTGTTATCTTTaacatgtttattgtttaatctGAGACTTTCCTTTATGCCTTTCGTTATTTGGTCGTGGTCCCTTTAAGAATCTTAGGTTTCGGTATAGAGTTATGCCATGTGATTGAGGAAGCGAGCATGTTCAGCAGAGAGTAGCTTTCGTAGCATTTTTTTGAAGCTTACTGTTATATTGCATACTTCTTGCATCTGTTTTAGCATCGTGGttTCACCTTTCCTCACAACGTCAATAAACCTGTGGACGAGGAGCTTATGTCTTCAGAGTCTTGATGTTAGGGAAAAGTTTACCTGGCTGTCACGTTATATCCAGTACATATAGCAAGGGCAGCACAAGGCCACTGGTGCAGACATGCAGCTACTCAGttgtccaattaatttttttcttacacagacttcctttgccaaagaaagagtcttctagatgagcatAAGCTCTGAATTCACCACCTATTTCCTTTATATTTCACTATTGACCTGCCGTAGCtcagaactgtaaagaaggtaaCGCAtattagcagaggatggtttcgatccatcgacctctgggttatgg

Function

NR:

description
uncharacterized protein LOC108191338

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100600 False 532 lncRNA 0.41 1 5396865 5397396
TU100602 False 661 lncRNA 0.41 1 5397479 5398139
XM_043249331.1 True 2669 mRNA 0.45 2 5396954 5399880

Neighbor

gene id symbol gene type direction distance location
bzw1b bzw1b,LOC107689509,LOC107549769,LOC107752595,LOC108435180 coding downstream 2318 5391353 ~ 5394547 (-)
LOC122351922 NA coding downstream 47762 5346160 ~ 5349103 (-)
LOC122351913 LOC107670336,LOC107720941 coding downstream 55644 5323729 ~ 5341221 (-)
LOC122351912 LOC107670332,LOC107549921,LOC107689507,LOC107752589,LOC107549740 coding downstream 77278 5297506 ~ 5319587 (-)
ybey ybey,LOC107670327,LOC107720944,LOC107689501,LOC107752586 coding downstream 256866 5138114 ~ 5139999 (-)
myo1b myo1b,LOC107748838,LOC107664008 coding upstream 63434 5463314 ~ 5521286 (-)
LOC122351910 farp1,LOC107689492,LOC107747234 coding upstream 366450 5766330 ~ 5796149 (-)
LOC122351461 si:dkeyp-118h9.7,LOC107689504,LOC107549742,LOC107752607,LOC107549895,LOC107720938 coding upstream 473713 5873593 ~ 5874656 (-)
LOC122351462 LOC107549895,LOC107689504,LOC107720938,LOC107752607,LOC107549742 coding upstream 474789 5874669 ~ 5875367 (-)
LOC122351923 LOC107549895,LOC107549742,LOC107689504,LOC107752607,LOC107720938 coding upstream 475594 5875474 ~ 5876391 (-)
G67917 NA non-coding downstream 215365 5141790 ~ 5181500 (-)
G67928 NA non-coding downstream 296088 5099906 ~ 5100777 (-)
G67923 NA non-coding downstream 307472 5089182 ~ 5089393 (-)
G67913 NA non-coding downstream 345573 5050429 ~ 5051292 (-)
G67911 NA non-coding downstream 369268 5027044 ~ 5027597 (-)
G68048 NA non-coding upstream 315461 5715341 ~ 5715637 (-)
G68053 NA non-coding upstream 335044 5734924 ~ 5735172 (-)
G68055 NA non-coding upstream 335457 5735337 ~ 5735783 (-)
G68082 NA non-coding upstream 406060 5805940 ~ 5806327 (-)
G68120 dip2a non-coding upstream 645235 6045115 ~ 6047596 (-)
LOC122351925 NA other downstream 27276 5349955 ~ 5369589 (-)
G67930 LOC107670337 other downstream 288478 5105894 ~ 5108387 (-)
G67912 NA other downstream 367390 5028926 ~ 5029475 (-)
dbi dbi,LOC107560815,LOC107747240,LOC107752581 other downstream 382052 5010513 ~ 5014813 (-)
G67863 farp1,LOC107747234,LOC107670305,LOC107689492,LOC107752600,LOC107549748,LOC101883674 other downstream 413118 4959717 ~ 4983747 (-)
LOC122351463 LOC107689507,LOC107549921,LOC107670332,LOC107752589,LOC107549740 other upstream 512975 5912855 ~ 5931136 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other upstream 643395 6043275 ~ 6043925 (-)
LOC122351979 NA other upstream 699191 6099071 ~ 6099912 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other upstream 847020 6246900 ~ 6261069 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other upstream 1671105 7070985 ~ 7153954 (-)

Expression


Co-expression Network