G68101 (LOC107670329,LOC107549899,LOC107730347,LOC107730410)


Basic Information

Item Value
gene id G68101
gene name LOC107670329,LOC107549899,LOC107730347,LOC107730410
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5890348 ~ 5892207 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU100731
GTTCTCTAAAAACATTCCACATTCTGGATATTTACCTTCAGTCTGAACATAGATGGAGAGCTCTCCAGATCTATCAGAACCCAATTTCATCCAGGTGTTATCAGTTAGAAGCCACTCCTCAACCTGACAGTAGTATTTCCCCATATCAGAGGGGCTGATCTGTGGTACAGTCAGTTTATAGTGTGTGGCTAGTGGTCGTCCAAACAGAAGATTTTTTTCACTAATTGCAGTGTGTAAAGTCCCATCATGCTTGGCAGTGAACATGGTGACTGGTTCTTCTTTCTCCTGAACTTTGAACCAGGTGACCTCAAAGAAAGACTTGTCACTGGTTTGTGAGTCAATGACACAGTCAATGGTGAACTCAGCCTGATGTTTGGTAATGTTAAGTATTC
>TU100732
GTTCTCTAAAAACATTCCACATTCTGGATATTTACCTTCAGTCTGAACATAGATGGAGAGCTCTCCAGATCTATCAGAACCCAATTTCATCCAGGTGTTATCAGTTAGAAGAAGCCACTCCTCAACCTGACAGTAGTATTTCCCCATATCAGAGGGGCTGATCTGTGGTACAGTCAGTTTATAGTGTGTGGCTAGTGGTCGTCTAAACAGAAGATTTTTTTCACTAATTGCAGTGTGTAAAGTCCCATCATGCTTGGCAGTGAACATGGTGACTGGTTCTTCTTTCTCCTGAACTTTGAACCAGGTGACCTCAAAGAAAGACTTGTCACTGGTTTGTGAGTCAATGACACAGTCAATGGTGAACTCAGCCTGATGTTTGGTAATGTTAAGTATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100731 False 392 lncRNA 0.42 2 5890348 5892207
TU100732 True 395 lncRNA 0.42 2 5890348 5892207

Neighbor

gene id symbol gene type direction distance location
LOC122351459 dip2a,LOC107752588,LOC107720936,LOC107670331 coding upstream 24974 5816845 ~ 5865374 (+)
LOC122351927 epha3,LOC107738584,LOC107676997 coding upstream 158278 5629122 ~ 5732070 (+)
c9h3orf38 LOC107549925,LOC107730394,LOC107664011,LOC107728235,LOC107676993,LOC107549751 coding upstream 362753 5523560 ~ 5527595 (+)
si:dkey-11f4.14 NA coding upstream 499162 5386472 ~ 5391186 (+)
igsf3l LOC107730347,LOC107670329,LOC107721263,LOC107549899 coding upstream 504079 5377251 ~ 5386269 (+)
LOC122351464 LOC107752607,LOC107720938,LOC107689504,LOC107549742,LOC107549895,LOC107576878 coding downstream 91682 5983889 ~ 6002637 (+)
LOC122351517 NA coding downstream 110568 6002775 ~ 6004352 (+)
LOC122351516 LOC107720938,LOC107752607,LOC107689504,LOC107549895,LOC107549742 coding downstream 113145 6005352 ~ 6030322 (+)
LOC122351469 col4a1,LOC107557928,LOC107715912,LOC107688716,LOC107702910,LOC107721605 coding downstream 284866 6177073 ~ 6193230 (+)
irs2b irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 coding downstream 354606 6246813 ~ 6261089 (+)
G68069 NA non-coding upstream 92856 5796094 ~ 5797492 (+)
G68058 NA non-coding upstream 122088 5766339 ~ 5768260 (+)
G68056 NA non-coding upstream 125474 5746855 ~ 5764874 (+)
G68013 NA non-coding upstream 328178 5467541 ~ 5562170 (+)
G67979 NA non-coding upstream 497969 5373409 ~ 5392379 (+)
G68160 NA non-coding downstream 196273 6088480 ~ 6103697 (+)
G68167 NA non-coding downstream 249412 6141619 ~ 6165064 (+)
G68195 NA non-coding downstream 403081 6295288 ~ 6323460 (+)
G68246 NA non-coding downstream 707320 6599527 ~ 6599806 (+)
G68247 NA non-coding downstream 780898 6673105 ~ 6673650 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 4595 5883927 ~ 5885753 (+)
trnam-cau_112 NA other upstream 432819 5457458 ~ 5457529 (+)
trnar-ccu_65 NA other upstream 433085 5457191 ~ 5457263 (+)
trnam-cau_111 NA other upstream 433505 5456772 ~ 5456843 (+)
trnar-ccu_64 NA other upstream 433773 5456503 ~ 5456575 (+)
LOC122351907 LOC107670338,LOC107721263 other downstream 70677 5962884 ~ 5973123 (+)
si:ch211-167j6.3 NA other downstream 2449088 8341295 ~ 8342751 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other downstream 2538904 8431111 ~ 8433483 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other downstream 2568537 8460744 ~ 8506143 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 2971180 8863387 ~ 8866305 (+)

Expression


Co-expression Network