G68270 (LOC107716762,LOC107688772,LOC107602882,LOC107721583)


Basic Information

Item Value
gene id G68270
gene name LOC107716762,LOC107688772,LOC107602882,LOC107721583
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6715996 ~ 6718143 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU100979
ATTGTTTGGGATTGCTGcctaaaaagaatgaaaagcaTGTGCAGAATGAGGATGTTCGGTCTGtcattgcattattttgtagtattgaaataaaatcagtgtgTCTGTAGCGTAAATAAACACTGAGACGATTTTATTACCCTGCTTAGACAGAGCTTTAGACAGAGTCATAAAAAGACCTCCAAACCTTGTTACAAAAGTTATATTTTGTCTGCATCAGATTTAAACTCGCCGAAGTTTTCATGTAATATGTTACTCTAAATCACACAGGATTCCTTAGCAACCTCATACAGTGCTCAATAAACagttaattgaaaataaaacataaatgcagaGAGCTCAATGCTTAATGAAACTAAAAGGTTTATTAGTGATGCTGAACCTTTGGCTGTTTTGTTCGATTAAAGAGCATTGAGTGTGTAAAACATTTCATGATTTTCCTGAATGATACATGATGCATACAATGTCATTGTTTAAGTGCAAATCGTCTggttttattatcatcatcagtgGATCCATATAGCAGCGTATAATATATTTCCACTTCAAGCACCGGTCGTAGGTGctttaaatatacaaagaaCATTGTTACCAACGCTTGCTAAAGAAGTAAATGCATCGGTGCAACTGGATTGAACTGAATGGTTTTCACATTTGACATCGCACCAAACACAAAGATTTTATTCAATAGGCATTAATaggaaaaatgacaaaacattctgtagaataaattatatatcaaGAAGTACACATTTCCTGAAGTACCATAACTACTtgcaattttatatttcatgcaTCACAAGCATAATAAAGCCGGTTCAAATAGATCATGGTTGCTGTAGATCCCAACGAAAGCAGTACAGACATGTGATATTGTCACTAATAGCTTTGTAAATTCACATCAAAGATATTGTTTAATCAGTGGTCTTACAGTCTCTTTTTCAAAGGGGCATTTCACCTTTTAATAGATTGTACACGCCGATCAGGTAAGTGCATCAACCTGTCACTAAATCACAGTATGGGAAGCATCTGCTGCCACAGAAGAGTGGTGCGCTCAGAGTTTCTCGTCCTCACTCGCATCCGATtctgaagatgatgatgatgatgatgacgacgatgaAGAAGATGACGACTAGGGTGCAAAAAAAGTTTGAGTTAGCAGCTCTTTCGGGATTTAGTCATGGCTTTTATGCTTAAAGTCACAGATTTAACTCAGAACATGACGAAGTAAAGCAAAGCACTCTTCCACTAggttttttatgattttaaaatgtattattatcaatgtcaacatttaataatgcttaatgctttaatatatatatatatttttttttaaatgcacaataaagaACAACATTGATCagaaattcaataaatatgttTCTAATGTTccaaagatttatattttaatgcactgtaaataaataaataaatgcacttattaactggacaaaataataataataataataatatagttttctccataaaactatattataatTTACTCATGTTTAAACCATTCCAAACACAAAGATATTGTTCATATTCGTATACTTGTTGCACATGATGTATGGActacatttagaaatatattttactgtacagtGTAGTTCTTCCAAATctattttatgttccacagaagaaagaaagtcatacgggtttgtaatgtgagtaaatgatgacagaaggaGAGATTTGGCAAAATGCTGAAAAGCAGTACTGACCCTCGACCGGGTTTCAGCAGGTGGAGCGGCTGGCCTTTCGTCGTCACTTCCTGTATCATCCTTCTGTGCGTAGGTCGGTGCCGGGTCATCAGCGGGGGGCTCTTTATCCAGCAGCTGAGGGGTGATGGCGACCCCTCGAGCTTTCAGATTATCATAGGCCGTCCTCTCGGCCACTAGGAGGACCAGCGTGTCCCCGCTCTTGCGGATGAGGTTTACAACCTCCTCATGTGTGCTCATTTCCACATTCACCCCGTTCACCTCCACAACAATATCATCATCCTCCAGTCCGGCTCTGTCTGCTGCTCCATCTTTCACCACCTGAGAGAAAACACATCAGCAGGTTAATCCATCTCTCATCCTCACGTTCTATAT

Function

NR:

description
PREDICTED: putative PDZ domain-containing protein PDZK1P1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100979 True 2102 lncRNA 0.37 2 6715996 6718143

Neighbor

gene id symbol gene type direction distance location
LOC122351204 LOC107716777,LOC107688771,LOC100331465,LOC107602892,LOC107702999 coding downstream 7788 6686218 ~ 6708208 (-)
LOC122352171 fam155a,LOC107716804,LOC107721616,LOC107570097,LOC107702989,LOC107688721,LOC101886421,LOC107735187 coding downstream 116798 6501409 ~ 6599198 (-)
abhd13 abhd13,LOC107570096,LOC107702974,LOC107688719,LOC107551070 coding downstream 217792 6492609 ~ 6498204 (-)
tnfsf13b tnfsf13b,LOC107702981,LOC107688720,LOC107721586 coding downstream 223640 6487238 ~ 6492356 (-)
myo16 myo16,LOC107716764,LOC107688718 coding downstream 238450 6319090 ~ 6477546 (-)
si:ch73-390b10.2 si:ch73-390b10.2,LOC107688773,LOC107551072,LOC107692818,LOC108266990 coding upstream 1611 6719754 ~ 6726798 (-)
tmtops2b tmtops2b,LOC107602912,LOC107688724,LOC107716802,LOC107721599,LOC106586769 coding upstream 89186 6807329 ~ 6832254 (-)
ecrg4a ecrg4a,LOC107602890,LOC107688728,LOC107716776,LOC107721563 coding upstream 165345 6883488 ~ 6888374 (-)
nck2a nck2a,LOC107602910,LOC107688727,LOC107721610,LOC107676443,LOC107551075,LOC107716798 coding upstream 178334 6896477 ~ 6943442 (-)
c9h2orf49 LOC107716774,LOC107688774,LOC107721580,LOC107676461,LOC107551065 coding upstream 247086 6965229 ~ 6969207 (-)
G68266 NA non-coding downstream 18103 6697686 ~ 6697893 (-)
G68265 NA non-coding downstream 32985 6680095 ~ 6683011 (-)
G68189 NA non-coding downstream 474394 6241322 ~ 6241602 (-)
LOC122351301 NA non-coding downstream 573314 6117851 ~ 6142682 (-)
G68120 dip2a non-coding downstream 668400 6045115 ~ 6047596 (-)
LOC122351577 NA non-coding upstream 56931 6775074 ~ 6776974 (-)
G68333 LOC107721598,LOC107716800,LOC107688722,LOC107579700 non-coding upstream 75259 6793402 ~ 6794375 (-)
G68328 st6gal2a,LOC107676409,LOC107721598,LOC107688722,LOC107551073,LOC107602911,LOC107716800 non-coding upstream 91705 6809848 ~ 6813015 (-)
G68357 NA non-coding upstream 164442 6882585 ~ 6882976 (-)
LOC122351994 NA non-coding upstream 174509 6892652 ~ 6895397 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 454927 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 616084 6099071 ~ 6099912 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other downstream 672071 6043275 ~ 6043925 (-)
LOC122351463 LOC107689507,LOC107549921,LOC107670332,LOC107752589,LOC107549740 other downstream 784860 5912855 ~ 5931136 (-)
LOC122351915 LOC108191338,LOC101883771,LOC101885620 other downstream 1316116 5396865 ~ 5399880 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other upstream 352842 7070985 ~ 7153954 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other upstream 1296306 8014449 ~ 8024672 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other upstream 1358325 8076468 ~ 8094847 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 3190045 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 3715364 10433507 ~ 10443619 (-)

Expression


Co-expression Network