CI01000000_00127682_00128077


Basic Information

Item Value
gene id CI01000000_00127682_00128077
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 123554 ~ 128077 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_00127682_00128077.mRNA
GTATATATTACTGCTTGAATGCCTTCAAGTCTCCATCTTTCTTGGTATCAAAAGAATCCTCTTTTCATTTCATAAGTAACGGTGTATAGTATGCTATGACAAAATGCATCAGAATATTTTTACCATGCTTTTGTGTAAAACTGCACAAATTCTCCAGACCAACATAAACATGCAAATAGAGTGACAAGATAGAACAAAGACTTTCTCCCGGTCATCTTTGATTGTCACCTCACCGAAATGGGTGTGAACTGATAGGGTCTTTAAGAGTCCTCAGATCAGGTATACCTTTGCTCAATCTCTTTTGAGACCATCGTTTCCTGTCTCCTTCCGGCAACTTTTTCTTCAAGTTAACTTCATTGGATTCAATTCAGCGCACTCCTGACAAAATCATCAAGAATCTCCAGAATCTACTGCATCTGGACTTATTCAGCAACCAAAGTCAATGCAAGTACCCGTTTGCAGCCTTTAGATGCATTTCCAAGTTATTGTGCCCCTTTTAAGGTGACCCTGATTCTTTGATGTTTCTCGCAGGTTGTGGTTAACTGTTGTAATCTTGCCATTCTCTTCACTCTCTCTCTCTTTCTTTACTTTCCTTCACTTTCTTTATTTTGTATATAATCTTTGCTCAGTTTAGTTGTGTGTGTAGCCTAACTTAGTTTCGTTTATTAAACCATTATATCCATTATATTCTTTCTTGGCCAGGAAGATAATTTGTTTCCTAGAATTGATAACTGATTATGTACACAAAATTAATTCTGCTACAGTCTGAAACTAATCCAAATATTTATAATTAATTATAATTAGTTATAATTAATTATTCATATTTCCTTTGAGCTAATTTACTACATTATTTTTGGTGGAGAATGTGGGCACGTTTTAAACTTTGTTTGTGAGCAACTCAGTTTCAATCTATGTGTGTTTATTAATGTTTTTATGCGTGTTTCATAGAGTGAGACAAGGCGCAACGCGCACTCACTTCTCTGATAACTGAAAGGCTTAAAGCCGATTGTTCAGTCAGTACGTTAACAGCTGCTATATTTGTCTAACATTTTAGCCACTGTTTAAAGTAAACTGCAGTTCATAATATTAAAATTGTTCCTGTAAAGATGATGAAATCTCTTCACAGCACATTTTAAAATTATTATTATCGCCTGTTAAAGAATGAAGAAATCTTCTTTCAGCGAAGTTCCTCCTAACATCTTTTAAAAGACCTTATAATTATTGTATCGCCAGATTTGATTCAATGCGTATATCCAATGCCATTCAACTAAGCGATCTCACTCCCTAAGGTTAACCATTAGCCTAGCTAACTAATGCACACTTTATGCAAATCTAATCAGAAAAGACTGCAGGCCAGTATCTGATTGATATGTAAATGGAAGTACTTAAAACCTTGATCAAGTGTTAATTTGTAACGACAGCGAAGGAATCCTTTTGTTTATATTTTTGTGTACTGGCAGCGAAGAAATCCTGTCACACCCTCTTGTGCAGTAAACTGGCACAAGAACGATCCGTTGAGATCTAAAAATTGTACTTGTGATAGTTGCAGTAAATTGGCCGTTAAGAAGAGAGTAATCTCGCACTAAACGCGTTCAGATTTAATCATGTTTTAGGTAAGTCTAGGTCATAATAGCTCTGACTAACCCTAAAGTGCAGTCTGTTTAAGTGTCTAACACTTCTCTTGACCTCTTGACTTCTTTTGTGTGGACTCACCCACGCCACCTTGTGGCCACTCTCAGTGAGGTCGGCTTTCCTCTCTCTACCTCTTTGTTTTATTTAATTCGTTTAATTTTAATTTCTTCTTTGGTTATTTTATTTTATTATTATCATTATTTTCTCTCTGCTTACTCATTATCTTGACATTTTTCAGGCCTTTTCCTCTTTTATTTTATACACTTATTTAAATTTAGTATAAACAAAGTGTAAATATAAATTTAAGTTAAGTTCCCTTTTGTTCAGCCATTTGTGTTTTATTTATAGATAGCACTTCCCCTAGTGCTTGGGTGGTGAAGCAACGGTTGATCTCACCACTGGGTCTCACCTGAGTGACCTCCATTCACCACCTGGCCTATTGAAATAGACACAGGCCCCCTCACTTATTCAAAGCCCAAAGAGGATTAGACATTCCCTGGTCTTTTAAGTGTTTGGCCCATCTTCCCTCTCCTAGCCATACCATCTCCCTAGGTGTCACGACCCAACAGTGCCCCCACTCTGTAGGCCCTGTCCTAACCCCTAGCAGTGGTAATAATAATAATAATAAATTTTATTTGTATTGCGCCAACAATAAAAATAACAAAAGAACAACACTACTCCATAATGACAATCACAATAATAACTCAAAAACAACAATGGCAACAAATACTGTAAAATTATTACTTAAAAGCTTCACTAAAAAGATATGATTTGAGTAAATTCTTAAACAATCAAAAGATGGAGCATTCCTAATAGGAAAAGGCAGAGAATTCCACAACCTGGGAGCAATACAAGAGAAAGACCTCCCACCCATAGTTTTGAGTTTACAATGAGGCTGGTACAGAGTAAGAGAACCAGCAGAGCGGAGAGACCGAGATGGCGTGGACACTGTGACCAATAAGCTTAGACCCTTTTCCTCCTCTATCCCTTTCTGTTGATTTGTTGGTTTTGTTTATTTATTCTTTTTTTTTTTTTTTTGCTTTACTCTGTTTTGTTTGTTTTAATTTCATGTAGAGAACGAACCTATGGGGAACATCATGGAATGCTGAATAATAGACTGACGACCCAAGTAGCCGAAAGTCGTTAGGCGACCCATCAGGCGACCACCCTGTCAAAAATCTTTGTTTAGAACTATTCCGGTGCACCCCCACACAGATTAGCCACACCTTGACATTCACAGCCGAGATAATAGGTGTCTGGCCTACACTACACTAACTGTCTGCACCAGTTAGCCAAACTGCACACAGCGTACATAAATATATGCTAGCATAGATCGTTAACTCTGCGCGGACTTGCATTGGCCTTCTTGTGTTGTTTTTCTCTTGCCACCAGTATGCCCAGATCATCCAACTCTGCCACCCACTGGGACCACCTAGAGGCCCGGCTGACTGCCATGACTGATGCCCTCCTGCCTAAAGCCGCCAGTGACCAACACCATCTGAGCCAGGAGCAGCTGGACAATGACATGAACAGGCTGATGGCCCATGATCCGACCAAGGGCTACAACCACAAAGAGCTGGCCAAGATCATCGGGGCACTAGCTCACAACCTCATCTTCCAGGCACGGCTAAGTGAGAAGAGTGTCATTCACCTGGAACAAGAAGCAGCAGCGCTAAAGCTCCAGGCTGAGGAGGCTCGGAGGACCAGGCACACGCCCAAAGTCGCCTAGACCAGCTGACCCTGGAGGCCCAGGACCAGCGTGGGACAATGGATGAGAAGGACCCAGAGCTACAGGAGGAAGTGAAAAGACTCCAAGATGCCTTGACAGAGCTCCTTGCAGAGGCAGCACACAGAGAGCAATTGGAGAAGGACGTCAGAGGAACTGAACGAAAAACTCCAACATGCTGAAGCTCTCCTTGGGAGAACAAGGGCTGAACTGAAAGAAAGGGATGCCAGGGCTAGAGCCTGTGAAGGCCACCTGCAAACCACCCAAGCTGAAGTCCAAGCTCTGATTCAGCAATGGGACTGCTTAAAAGATGAACTTGAGACAGTTCACAGCAAACTGAAATGTTCCTATAGACTGCAAGGTGACCAGAAAGGGGAAACACACACCACCGAATCTCCCCCGACCGGTGAGCCCAGGCCTCCCTTCAAAGAGCTTCTAGTCCGAAAGGGGGGTGAGAGCCCATTGCTCAAGATGTCACCAGCCAGCATCCAAGGATCACCATCAGCAACAAGGGGGCGGGAGCCATTCCAGAGGACTCCTGCCACTAGTTACGGCGTGTCTCTCAGAGACCTTGACAAGCTGTCCAGAAACATCCATATGTTCACCCCAGACCTTGCAAGAGGCCACAACGTGCATGCCTACCTGCAGGACATCAATTTTCACTTACAGACTATGGCAAATGTAACCACACGAGACAGACTGTACTTGCTCAGAATCACCTCCAGCCGTGAAGCAAGAAGCTTACTTGATCAGCAGTCAGAATCGGCGCCATGGAACTCAAACAAGGCAGACAGGAGACACCACAGGCCTACTACAACAGACTTCGAAGGACCTACTTCGGAGCACAGAACGTGCACCCTGCAGTGAGCCACCACTTAGGGGTCCTGGCCTGCCCGCGCAGTATGTCCACTCAGCAGTTGTGGGACTTAGTCCTTAAGGCTTCGGAAAAGATGGTGAAACATCCAACCCTCTACCCTGTCTCTGACCATCGTTCAAAGCTGACTATAGGGGGTGCACAACATGCCCCACAACACAAGTCTGAACTCTCATCAGAACAGGACAATGCGGTTACGTCTGAGTCAGCAGAGATCCTGGAGATTCTAAAGGAATTCCTCCAGGATAGACTTGGCCAGGGAGACGAGGGGGACAGCTCAGACTTCCTATGA

Function

NR:

description
crestin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_00127682_00128077.mRNA True 4524 mRNA 0.43 1 123554 128077

Neighbor

gene id symbol gene type direction distance location
CI01000000_00121669_00123027 NA coding upstream 375 121591 ~ 123179 (+)
CI01000000_00119500_00121099 NA coding upstream 2240 118549 ~ 121314 (+)
CI01000000_00112199_00115163 NA coding upstream 8198 111529 ~ 115356 (+)
CI01000000_00108218_00111090 NA coding upstream 12344 107962 ~ 111210 (+)
CI01000000_00084533_00088200 NA coding upstream 34350 84286 ~ 89204 (+)
CI01000000_00252240_00259416 SPON2B, SPON2 coding downstream 124163 252240 ~ 259848 (+)
CI01000000_00260299_00262433 NA coding downstream 132222 260299 ~ 263524 (+)
CI01000000_00264365_00265448 NA coding downstream 136288 264365 ~ 265506 (+)
CI01000000_00588173_00605818 NA coding downstream 459791 587868 ~ 606196 (+)
CI01000000_00639336_00658655 NA coding downstream 511075 639152 ~ 659048 (+)
CI01000000_00050357_00064104 NA non-coding upstream 60366 49997 ~ 64310 (+)
G19 NA non-coding upstream 95920 26692 ~ 27634 (+)
G20 NA non-coding upstream 97189 26092 ~ 26365 (+)
G18 NA non-coding upstream 97883 25075 ~ 25671 (+)
G14 NA non-coding upstream 98979 24122 ~ 24575 (+)
G72 NA non-coding downstream 15792 143869 ~ 144150 (+)
G73 NA non-coding downstream 16319 144396 ~ 144612 (+)
G74 NA non-coding downstream 16763 144840 ~ 145103 (+)
G81 NA non-coding downstream 22639 150716 ~ 151207 (+)
G87 NA non-coding downstream 37075 165152 ~ 165353 (+)
G252 NA other downstream 375132 503209 ~ 507072 (+)
G350 NA other downstream 543765 671842 ~ 676937 (+)
G435 NA other downstream 1297044 1425121 ~ 1432854 (+)
G579 NA other downstream 1687376 1767917 ~ 1908808 (+)
G2774 NA other downstream 4325701 4453778 ~ 4454232 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G332788 NA non-coding NC_047616.1 CM018562.1 16041384 ~ 16041587 (+)