G68296 (nck2a,nck2,LOC107688727,LOC107602910,LOC105022090,LOC107716798)


Basic Information

Item Value
gene id G68296
gene name nck2a,nck2,LOC107688727,LOC107602910,LOC105022090,LOC107716798
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6907738 ~ 6943321 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU101009
AGAGTGTCTTTCAGGTTCTTCACTAGTGAGGTTTTCTTCAGACTGTTTTTGCGCTCAACATAATTAGAGGGAACGTAGCCGGTGCGGTTGGATGCGTTGCGGACTCTCCACCAGGTCTTGGAATCATCCAGCAACCACAGGCGCTCGTTCTTCCGGATGTCCAGTTCCTGGTCTTGCTGAGCTGTGTAGTCCCACTTAGCTATAACAATCACCTCCTCTGTCATCTTTCATCGAGTCCCACTGCTTGCTGCAACTCCTGACAGATCGGGCTTTAGGGGAGCAGGAAAACGCGCTCTCTTTGCAGACTCGGATTGGTGGGACGATACGTAGCGAATGTAAATCCTTTTCGGCGAGTTTTTGTCCGTGGGCCcgggctgctgctgctgctgctgctgctgctctctctccctctctctttctctatctctctctctctcggtctgcTCGAGCTCTCGCTCTCAGCCAGCGCGA

Function

symbol description
nck2a Predicted to enable receptor tyrosine kinase binding activity and signaling adaptor activity. Predicted to be involved in several processes, including cell migration; regulation of response to endoplasmic reticulum stress; and regulation of translation. Predicted to act upstream of or within actin filament bundle assembly; barbed-end actin filament capping; and regulation of translation. Predicted to be located in cytosol and endoplasmic reticulum. Is expressed in rhombomere 3 and rhombomere 5. Orthologous to human NCK2 (NCK adaptor protein 2).
nck2 Enables phosphotyrosine residue binding activity. Involved in several processes, including negative regulation of protein phosphorylation; positive regulation of T cell proliferation; and positive regulation of actin filament polymerization. Located in endoplasmic reticulum.

NR:

description
cytoplasmic protein NCK2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101009 True 471 lncRNA 0.54 2 6907738 6943321

Neighbor

gene id symbol gene type direction distance location
uxs1 uxs1,LOC107688726,LOC107676432,LOC107551074 coding upstream 27710 6842578 ~ 6880028 (+)
st6gal2a st6gal2a,LOC107721598,LOC107688722,LOC107676409,LOC107716800,LOC107602911,LOC107551073 coding upstream 94716 6763869 ~ 6813022 (+)
pdzk1 LOC107688772,LOC107721583,LOC107703056,LOC107551063,LOC107716762,LOC107602882 coding upstream 189941 6710206 ~ 6717797 (+)
irs2b irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 coding upstream 646649 6246813 ~ 6261089 (+)
LOC122351469 col4a1,LOC107557928,LOC107715912,LOC107688716,LOC107702910,LOC107721605 coding upstream 714508 6177073 ~ 6193230 (+)
fhl2a fhl2a,fhl2,LOC107716797,LOC107676452,LOC107688730,LOC107721574,LOC108266723 coding downstream 13200 6956521 ~ 6964046 (+)
mfsd9 LOC107716769,LOC107688732,LOC107602885,LOC107551077,LOC107721579,LOC107676555 coding downstream 157108 7100429 ~ 7106362 (+)
inpp4aa inpp4a,inpp4aa,LOC107676472,LOC107688733,LOC107602877,LOC107721597 coding downstream 174225 7117546 ~ 7142648 (+)
LOC122351345 si:dkey-4e7.3,LOC107688734,LOC107602908,LOC107716768 coding downstream 199798 7143119 ~ 7153966 (+)
LOC122351346 si:dkey-4e7.3,LOC107688734,LOC107602908,LOC107716768 coding downstream 206610 7149931 ~ 7153764 (+)
G68254 NA non-coding upstream 199545 6707841 ~ 6708193 (+)
G68252 NA non-coding upstream 212827 6694678 ~ 6694911 (+)
G68251 LOC107551047,LOC107702999,LOC107716777,LOC107688771,LOC107602892,LOC100331465 non-coding upstream 215898 6691342 ~ 6691840 (+)
G68248 NA non-coding upstream 223242 6682624 ~ 6684496 (+)
G68247 NA non-coding upstream 234088 6673105 ~ 6673650 (+)
G68304 si:dkeyp-118h3.5,gpr45,LOC107602888,LOC107688775,LOC107716773,LOC107676540,LOC107721584,LOC107551066 non-coding downstream 19834 6963155 ~ 6974701 (+)
G68309 NA non-coding downstream 48512 6991833 ~ 6995856 (+)
G68405 NA non-coding downstream 255948 7199269 ~ 7199817 (+)
G68401 NA non-coding downstream 313359 7256680 ~ 7259394 (+)
G68424 NA non-coding downstream 319220 7262541 ~ 7263713 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 934615 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 1021985 5883927 ~ 5885753 (+)
trnam-cau_112 NA other upstream 1450209 5457458 ~ 5457529 (+)
trnar-ccu_65 NA other upstream 1450475 5457191 ~ 5457263 (+)
trnam-cau_111 NA other upstream 1450895 5456772 ~ 5456843 (+)
si:ch211-167j6.3 NA other downstream 1397974 8341295 ~ 8342751 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other downstream 1487790 8431111 ~ 8433483 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other downstream 1517423 8460744 ~ 8506143 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 1920066 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 1923776 8867097 ~ 8871633 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G176091 NA non-coding CI01000037 null 2325318 ~ 2378285 (-)