LOC122351350 (cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538)


Basic Information

Item Value
gene id LOC122351350
gene name cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7070985 ~ 7153954 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU101108
attgactTTATTTATAGCTCTGTCAGACTTGTTAGCGTGTGCACTTGGCTGTAaaacaatgtctttactgtataataaatgcTCTTTCATTTTTCAACATGTAACAGTTCTGTATAAATGGCTTTATGATTTTATCAGATTGTAGTAAATTTCCACAAAgatgttcataaaaaaaaatacagtaagctAATTCCAGACACGGCTACGGATGACGGTTTATTTCAAAGCATTCATCATGAGCTCTTTAAATCTCTCCAAGTCCACCTTCTTCAGGATGTGGGCTTTGTGAGTCTTCTTCAGGATGTCGAGGTGATCTACAACCATCATTCCCCGGCAGTAGTTCCCCGCCAGCTCGACGGTGACGGGTTTGAGGTCGGTTTCAATGATATACGCCTCGTCTACGGCTGCTGCCATGGCGTAAGAATCGCAGGAGATGAATCCCTGCCCGTCCACGAGCTCCTTCTCGATCCTCTCGCTGTAGGTGGACTCCATGCTGTGCTTAAAGATCAGCTTCATAAACCGAGCTTTATCCGTGTCCTGAGCCAGCCAGCCGTCACAGaactcctgaaacacacacgtGCAGATAGTGTATAATATAACATTCAAGAATGTATAAACCACCAGCagttatatttagattttacataATCATCTATATGCGTTATTACAAAGTTTAAGAAATTCGAATCTCACCCAGGGTATCTTGCTGCGACACGTGAACTCCCAGGTGGCAATGTAAACTGGGCAAGTGAATTCATTCAGAACTATATATGCTGCTTCAGGATCAGCTGCGAAGTTGTACTCTCCACATACAGTTGTGTTCCCACGAGCTAAAGACAAACAGACGTTATTCTCTTACCTGGTtcagttgcatttaaaataggCAATACAGATCAGACTGAGTCGCACA
>TU101110
CCGCTTTCATAATAATTTTGCCTTTGACTTACCTATAGCTTGTTGTGTTCTTTTTGCCATATTCCGGGGCCCACATTTCTCTTAAACTTGCTCGGATGAAAGCTCTACAGAATGCCCAAATACTACGAGGATAAAGAGGAAGACGGCCGAGCCTGCGCTGGAGTGAGAGAAGATTTCAAAGCCTGTCTCCTTCAGCATGACTGTGTACTGAAGGAGGGTAAGAAGCCCAGCGAGTGCCTGAAGGAAGGACATTGCAAAGGCTTGCAAGTGGCTTTCTTTGAGTGCAAGAGATCCATGCTGGACAACAGATCTCGATTCCGAGGCAGAAAAGGATACTGAGTAACACCTTCAATGTGAATAACATGTTTTGTATCAAAATGCCAAGACATGCTCTCAGTTGTGtaaatataatgctttttaaGCAAACCTGTcttgtgaaaaacaaatgactCGTGATgcagttcataaaaaaaaaaaatacagtaagctAATTCCAaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>TU101111
attgactTTATTTATAGCTCTGTCAGACTTGTTAGCGTGTGCACTTGGCTGTAaaacaatgtctttactgtataataaatgcTCTTTCATTTTTCAACATGTAACAGTTCTGTATAAATGGCTTTATGATTTTATCAGATTGTAGTAAATTTCCACAAAgatgttcataaaaaaaaatacagtaagctAATTCCAGACACGGCTACGGATGACGGTTTATTTCAAAGCATTCATCATGAGCTCTTTAAATCTCTCCAAGTCCACCTTCTTCAGGATGTGGGCTTTGTGAGTCTTCTTCAGGATGTCGAGGTGATCTACAACCATCATTCCCCGGCAGTAGTTCCCCGCCAGCTCGACGGTGACGGGTTTGAGGTCGGTTTCAATGATATACGCCTCGTCTACGGCTGCTGCCATGGCGTAAGAATCGCAGGAGATGAATCCCTGCCCGTCCACGAGCTCCTTCTCGATCCTCTCGCTGTAGGTGGACTCCATGCTGTGCTTAAAGATCAGCTTCATAAACCGAGCTTTATCCGTGTCCTGAGCCAGCCAGCCATCACAGaactcctgaaacacacacgtGCAGATAGTGTATAATATAACATTCAAGAATGTATAAACCACCAGCagttatatttagattttacataATCATCTATATGCGTTATTACAAAGTTTAAGAAATTCGAATCTCACCCAGGGTATCTTGCTGCGACACGTGAACTCCCAGGTGGCAATGTAAACTGGGCAAGTGAATTCATTCAGAACTATATATGCTGCTTCAGGATCAGCTGCGAAGTTGTACTCTCCACATACAGTTGTGTTCCCACGAGCTAAAGACAAACAGACGTTATTCTCTTACCTGGTtcagttgcatttaaaataggCAATACAGATCAGACTGAGTCGCACA
>XM_043248373.1
ACATAACATGGCCGCTTTCATAATAATTTTGCCTTTGACTTACCTATAGCTTGTTGTGTTCTTTTTGCCATATTCCGGGGCCCACATTTCTCTTAAACTTGCTCGGATGAAAGCTCTACAGAATGCCCAAATACTACGAGGATAAAGAGGAAGACGGCCGAGCCTGCGCTGGAGTGAGAGAAGATTTCAAAGCCTGTCTCCTTCAGCATGACTGTGTACTGAAGGAGGGTAAGAAGCCCAGCGAGTGCCTGAAGGAAGGACATTGCAAAGGCTTGCAAGTGGCTTTCTTTGAGTGCAAGAGATCCATGCTGGACAACAGATCTCGATTCCGAGGCAGAAAAGGATACTGAGTAACACCTTCAATGTGAATAACATGTTTTGTATCAAAATGCCAAGACATGCTCTCAGTTGTGtaaatataatgctttttaaGCAAACCTGTcttgtgaaaaacaaatgactCGTGATgcagttcataaaaaaaaaaaatacagtaagctAATTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101108 True 910 lncRNA 0.42 2 7146440 7153954
TU101110 False 524 TUCP 0.40 4 7070985 7148620
TU101111 False 910 lncRNA 0.42 2 7146440 7153954
XM_043248373.1 False 507 mRNA 0.42 3 7147155 7148631

Neighbor

gene id symbol gene type direction distance location
pou3f3a pou3f3a,pou3f3,LOC107716796,LOC107688731,LOC107602909,LOC107721578,LOC107676544 coding downstream 80217 6987723 ~ 6990768 (-)
gpr45 si:dkeyp-118h3.5,gpr45,LOC107602888,LOC107688775,LOC107716773,LOC107676540,LOC107721584,LOC107551066 coding downstream 96077 6969817 ~ 6974908 (-)
c9h2orf49 LOC107716774,LOC107688774,LOC107721580,LOC107676461,LOC107551065 coding downstream 101778 6965229 ~ 6969207 (-)
nck2a nck2a,LOC107602910,LOC107688727,LOC107721610,LOC107676443,LOC107551075,LOC107716798 coding downstream 127543 6896477 ~ 6943442 (-)
ecrg4a ecrg4a,LOC107602890,LOC107688728,LOC107716776,LOC107721563 coding downstream 182611 6883488 ~ 6888374 (-)
mgat4a mgat4a,LOC107721595 coding upstream 1025 7154979 ~ 7194511 (-)
creg2 creg2,LOC107716793,LOC107721575,LOC107602906 coding upstream 42161 7196115 ~ 7200021 (-)
cracdla kiaa1211l,LOC107602905,LOC107688737,LOC107602875 coding upstream 46316 7200270 ~ 7214956 (-)
mitd1 mitd1,LOC107688779,LOC107668392,LOC107721562,LOC107721614 coding upstream 61059 7215013 ~ 7218008 (-)
slc23a3 LOC107688765,LOC107716759,LOC107602874,LOC107721561 coding upstream 94065 7248019 ~ 7256613 (-)
LOC122352164 NA non-coding downstream 35624 6982678 ~ 7035361 (-)
LOC122351994 NA non-coding downstream 175588 6892652 ~ 6895397 (-)
G68357 NA non-coding downstream 188009 6882585 ~ 6882976 (-)
G68328 st6gal2a,LOC107676409,LOC107721598,LOC107688722,LOC107551073,LOC107602911,LOC107716800 non-coding downstream 257970 6809848 ~ 6813015 (-)
G68333 LOC107721598,LOC107716800,LOC107688722,LOC107579700 non-coding downstream 276610 6793402 ~ 6794375 (-)
G68473 NA non-coding upstream 173875 7327829 ~ 7341494 (-)
G68489 NA non-coding upstream 227336 7381290 ~ 7381508 (-)
G68555 nrp2b,LOC107688766,LOC107688751,LOC107752901 non-coding upstream 661295 7815249 ~ 7818832 (-)
G68554 nrp2b,LOC107596550,LOC107716756,LOC107688751,LOC107593002,LOC107752901 non-coding upstream 666054 7820008 ~ 7821889 (-)
LOC122352023 NA non-coding upstream 1316909 8470863 ~ 8474578 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 809916 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 971073 6099071 ~ 6099912 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other downstream 1027060 6043275 ~ 6043925 (-)
LOC122351463 LOC107689507,LOC107549921,LOC107670332,LOC107752589,LOC107549740 other downstream 1139849 5912855 ~ 5931136 (-)
LOC122351915 LOC108191338,LOC101883771,LOC101885620 other downstream 1671105 5396865 ~ 5399880 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other upstream 860495 8014449 ~ 8024672 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other upstream 922514 8076468 ~ 8094847 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 2754234 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 3279553 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 3361318 10515272 ~ 10519457 (-)

Expression


Co-expression Network