G68397 (desma,LOC107688742,LOC107602901,LOC107716787)


Basic Information

Item Value
gene id G68397
gene name desma,LOC107688742,LOC107602901,LOC107716787
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7280767 ~ 7301495 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU101154
TGCTTTCAGTCTAGATACAGAGATCTCAATTCAGCCTTTGTGTGCCTGTGAAAAATCTCTGATGCAGACCTTAGACTTGTACCATTCCTCAGCCTCGGCGATATTCTTGGCAGCGATAGCCTCGTACTGCATGCGGATGTCCCTGAGGGCGGCAGTCAGGTCTGGTTTGGACATGTCCATTTGGACCTGCACCTGACTCTCCTGCATCTGGTTTTGCAGCTCACGGATCTCCTCCTCGTACATCTCTGCGATGCGCGTGGGCTCGCGGCCCCGCAGACGTTCGATCTCCACAGACAAGGCCTGGTTCTGCTGCTCGAGGAAGCGCACCTTCTCGATGTAGCTGGCGAAGCGGTCGTTGAGATGTTGCAGCTCTGCCTTCTCGTTGGTGCGTGTATTGAGGAAGTCCTGGTTCATGGCGTCGGCCAGATTGAAGTCCAGCTTCTCACCGAGGCCTGCATAGGAACGGACCATTGATCCACCACCGAATGAAGCGCTGGATGCGCGCTGGCTGGAATACATGGGAGAAGAGGAGGACTTGGTGACTTCATAAACTCTGGAGGACACACGAGAGGATCCAGAGGAACCTGCGCGGCCAGAGAAAACGGAGGAGCCAAGGCCGGAGCCGAAGGTGCGGCGGTAAGAGGAAGCCGTCTCGGCTGAAGCTGAATATGACTTGCTCATGACTGGGCCTCTAAGGGTTGTATGGTGTGCTAATGCCGCTTCGCTGA
>TU101158
attttttttttttttttttttttttttttttttttttttttttttttttTAGgaagaaaatacagtttattgtCTTTTTGTAGCAGTGGAACAGCTTTTCAGATATGACCCTaccacacatacattcatatcaACAAAAACCTCTGAGATCATCTGGCCACATTCAGGACTCGCCGTACAATATGCATATTATGCCGTTTTGCTCGTTCTCCCTCTTGTTCTTCAgctcacttttctttttttgcctgCATCATCCACATATGCAGTAATGGGTCGTGACAATACTGGGCGTGTGCATGAAAAGCCTGCGGCCATCAGTGAAAATGTAAGTTAGGGAAAGGGATTCTATGAAACTCAATCTGTTTCATAGGCTTTACATGATGtcctgctggtgctgtgtggACTCACTGACGacctgaagagagagaaaaaaaggggaATGATTAGAGCGACGGTGTCTGAATAGGATACAGATGATTCACATGCACAGATGGCTGCATATACATgtagagaaaagagaaaaaagaaaaaggcttaAAGTGAATGGTTGATGCTCAGTAATAAGGAGCAGAGACAGCTGGGAGAGGCATTCCTATAAGTTAAAACAGGCCATTTCCTGCTGGAAATCAATACTGGGCTGGTGCAAGGACGCGTTCTTTGATAAATGAACTTCTCTGTATGTGTTGTGCAGAAACACAGTGATATTCAGCAGAGCAGAAAACAGATATTAACAGTGATACACAAGAGATTTGGAGGATTCTGCAGTGAAACCCAGTGCTGGTTAATAGGGAACAGGACGTTTTTGGAAAAAGACTGTGCAAACAGATGAGCCATGGCTGAACTTACACACTGAGCACTGAGGGCACTCATGCCCTCACTTGTCCTAGTCTAgagtaaaatagaaaattattttgatgattatatGCACCCATACACAgcaggcgtgtgtgtgtttgtgtatatcgCACATATAAGATTAGGCAGCCTGTAAAAATCCATCAGTTACAATAACTGTATAAGCAATTACTAAGCTAGTACacgagtgtttgtttgtgctttttttgttacCTCGCCATCCCGGGTCTCAATAGTTTTGATCAGAACTGTTTTCTTAGAGTGGACTTCAGATGAacgctgttgttgttgttgttgctggtGCTGGTGGTGCTGCTCTGGGCTTGTCTCTATGGCAACAATTCACAACCACGCCATCATTAAACTCATCCTCACAtggtaaatacataaatactgcATTAGTGATATCATCATTAGCTGAGGTGCTCAAACACAACAAAGCAAACAGAGAggtaagtatttaaaaaaacaatggtttTGCGCCCCCTTGTGGATGAAAAAGACAAGCTTTGGCCAAAGATATCTAttattaaagggacagttcatccaaaaatcatttacttactCTCATGTTCATTCAAAGCTACTACTTTTTACTAACTATAAAACCATACAACTATAAAAcgttatacttttttttgtcagtggGCGAAAACAGAAGTGTTGCGTTTATAATTTCGTTTAGTGTATGTTTAGATCTGTGGcagaattaaaaattttttttgtgtgacttGTCTTTTAAGGAAGTGTGAAAGTAGTTTTTCTTGTAAAGAACCCACCTCTGAAACTCAAGGTAGAGAAGGACTGCACAGGCAAGGAGATcctgaaaatacataaaataatcagATAAAATAAACCTTTGTTATATCAGTTACGGAAGGAGCAAGCAATCTAAGTCTGTCTAAATACTTATCTATCTCTTACCTGCTCTCCTCTCCTTCCAGAAGCTTCCTGTAGGTTGCGATCTCCACATCGAGTGCCATCTTAACATTCAGCAGATCCTGGTACTCGCGGAGATGGCGAGCCATCTCGTCCTTCATTTTTGCGATTTCAGCCTCAAGACGGGCAATGGTGTCCTGAAAACCGCCGGCCTCACGACCCATCCTCTCCTCCATCTCCCTCATTTGCCTCATCAAAGACTCATTCTGCGGAAGGAATAGCAAAAAGTTGGAAGAAGTGAGAAGAAATGGCTACAACTAGGGGGAGACTTATGTACAGAGGGAAGAGAGTTGAGATGATGTGAgtggaatattaataataactgcgGATGAGTTCCAGTAGATATTTCTAGTGCTACTGTAGGCCATTACTGGCTCTTTGCTGAATCAAATTTATTCATTGAGCACCTGGGGAAACATATTAAAGACTTCATAATTGGTAATAAGATGGATTCAGGTGTGCTGAGGCTCAGCTAATATTTGTACTGGCTGGGAAATAATAACTCGGCTTACAGCCCATGCACAGAATCTTTAAAGACTTACGGTTCCCTTGAGAGAGTCGATCTCGCAAGTGTAGGACTGGATCTGGTGACGGAACTCCATGGTCTCCATCTTGGCTTGTCTGAGAGCATCATTATTCTTGTTTACCGCCTGGTTCAGATCTGACCTTAGACTTGTACCATTCCTCAGCCTCGGCGATATTCTTGGCAGCGATAGCCTCGTACTGCATGCGGATGTCCCTGAGGGCGGCAGTCAGGTCTGGTTTGGACATGTCCATTTGGACCTGCACCTGACTCTCCTGCATCTGGTTTTGCAGCTCACGGATCTCCTAAAGGAAAAGGTAAACAGAG

Function

symbol description
desma Acts upstream of or within several processes, including heart contraction; regulation of cardiac muscle contraction by calcium ion signaling; and sarcomere organization. Located in Z disc. Is expressed in several structures, including cardiovascular system; hindbrain neural plate; mesoderm; musculature system; and pectoral fin. Used to study myofibrillar myopathy 1. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple) and myopathy (multiple). Orthologous to human DES (desmin).

NR:

description
PREDICTED: desmin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101154 False 728 lncRNA 0.56 2 7298033 7301495
TU101158 True 2644 lncRNA 0.41 4 7280767 7298285

Neighbor

gene id symbol gene type direction distance location
ihha ihha,LOC107716791,LOC107688738,LOC107721594,LOC107668405,LOC107551082,LOC107602904 coding upstream 33169 7241336 ~ 7247598 (+)
LOC122351345 si:dkey-4e7.3,LOC107688734,LOC107602908,LOC107716768 coding upstream 126801 7143119 ~ 7153966 (+)
LOC122351346 si:dkey-4e7.3,LOC107688734,LOC107602908,LOC107716768 coding upstream 127003 7149931 ~ 7153764 (+)
inpp4aa inpp4a,inpp4aa,LOC107676472,LOC107688733,LOC107602877,LOC107721597 coding upstream 138119 7117546 ~ 7142648 (+)
mfsd9 LOC107716769,LOC107688732,LOC107602885,LOC107551077,LOC107721579,LOC107676555 coding upstream 174405 7100429 ~ 7106362 (+)
ptprna ptprna,LOC107551086,LOC107688743,LOC107716786,LOC107602900,LOC107668387,LOC107721560 coding downstream 3345 7304840 ~ 7328592 (+)
mnx2a mnx2a,LOC107551068,LOC107688780,LOC107602884,LOC107716783,LOC107668369,LOC107721589 coding downstream 62469 7363964 ~ 7366993 (+)
cfap65 cfap65,LOC107688747,LOC107668360,LOC107716758,LOC107735777 coding downstream 66169 7367664 ~ 7380524 (+)
LOC122351251 LOC107716765,LOC107721581,LOC107551069,LOC107668359 coding downstream 79323 7380818 ~ 7383202 (+)
fn1a fn1a,LOC107716781,LOC107688749,LOC107668382,LOC107721590 coding downstream 102857 7404352 ~ 7430484 (+)
G68424 NA non-coding upstream 17054 7262541 ~ 7263713 (+)
G68401 NA non-coding upstream 21373 7256680 ~ 7259394 (+)
G68405 NA non-coding upstream 80950 7199269 ~ 7199817 (+)
G68309 NA non-coding upstream 284911 6991833 ~ 6995856 (+)
G68304 si:dkeyp-118h3.5,gpr45,LOC107602888,LOC107688775,LOC107716773,LOC107676540,LOC107721584,LOC107551066 non-coding upstream 306066 6963155 ~ 6974701 (+)
G68435 NA non-coding downstream 33996 7335491 ~ 7336359 (+)
G68446 NA non-coding downstream 551986 7853481 ~ 7854278 (+)
G68668 NA non-coding downstream 902358 8203853 ~ 8205963 (+)
G68678 NA non-coding downstream 921092 8222587 ~ 8222817 (+)
LOC122351403 NA non-coding downstream 1299229 8600724 ~ 8614984 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 1307644 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 1395014 5883927 ~ 5885753 (+)
trnam-cau_112 NA other upstream 1823238 5457458 ~ 5457529 (+)
trnar-ccu_65 NA other upstream 1823504 5457191 ~ 5457263 (+)
trnam-cau_111 NA other upstream 1823924 5456772 ~ 5456843 (+)
si:ch211-167j6.3 NA other downstream 1039800 8341295 ~ 8342751 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other downstream 1129616 8431111 ~ 8433483 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other downstream 1159249 8460744 ~ 8506143 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 1561892 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 1565602 8867097 ~ 8871633 (+)

Expression


Co-expression Network