sumo3b (sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195)


Basic Information

Item Value
gene id sumo3b
gene name sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8431111 ~ 8433483 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU101615
TGGGAATCCAGTCTGCGCTTTCTTGCCGAGCGCGGGGAGGATAGCACTCGTGTTACCGTCACTTTCACGTTCACCGGGAGATTTctacatttctacaaaaatgtCAGACGAGAAGCCAAAGGAGGGCGTGAAGACCGAAAATGACCACATCAACTTGAAAGTGGCGGGTCAGGACGGATCTGTGGTCCAGTTCAAAATTAAAAGGCACACCCCCCTCAGCAAACTGATGAAGGCCTACTGTGAAAGACAGgGTTTATCCATAAGGCAAATTAGGTTCAGGTTTGATGGTCAGCCAATTAATGAGACGGACACACCTGCACAGCTGGAAATGGAAGATGAGGACACTATCGACGTCTTCCAGCAGCAGACGGGAGGAACCTGCTAAAGAAAAAGCACACGTGGATGAAGCTGGTTTATTTGCGCTCCTCTTCACTTCCACTGCAGTTCAGGGCTGAAATGGAAAAGGTTTTGGAAATCAATTGTTTAAGTTAATAGCTGCTTTTTCTGTTGtcgtttgttttcattttaatcatccAAAGACCTCATTTCCGTTTTTGCAATGATCTCCCTGAACTAAATTGGAAATGACAgttagtaatgtttttttttttttttttcctccccacCTTTTGGAAATTGTATGCCTGTTGTATACGTTTTTGTATTATGTACGTATGTTTGCACCTCCCCcatctatttttatatacaagGAGGGAAGCTTTGTGAAAGAGGATGTTTGTGACTTCTTAGTACGGTCTCGATTTCTTTAATTGTGGTGAACGTCTAAATTTAAGATGCTCTTTTTATGAACAGTTTCGAACGGTGACATTGcagcatttgtttatttctgacaCCTCAGGTTTGATAAAGCTAGATTGTGGATCGTATACCGGtagccatttttaattttaagaacgTTGATGCGTATGTCTTTAAAAGTTTGCTTAAGTATGAATTTCATGATATACAAAACTTAAGTGTTCCCCTTGATTTTATCGTTTCGTAGTTTGCCCTCTGCAAATGCGTCATATTCTTATAGTAACATTGCTCTTATTTAGCCCTTCTGGCGTATCGAGAGTATTAAACGCTGTCCTGGTGTAATTGCAACTCCGCGGTGAATTCAAGCCAAGTTAACGTGTGCGTGTTGCATTGGCAGGGCTGTTTGGGAGAACAGAGGATCCTATGTTGGCCATTtactactgtatataataaatatagtttgatacaga
>XM_043249725.1
GAGATCACGTGGTTTTGCCCGGGCCAATCAAACGTGGGAATCCAGTCTGCGCTTTCTTGCCGAGCGCGGGGAGGATAGCACTCGTGTTACCGTCACTTTCACGTTCACCGGGAGATTTctacatttctacaaaaatgtCAGACGAGAAGCCAAAGGAGGGCGTGAAGACCGAAAATGACCACATCAACTTGAAAGTGGCGGGTCAGGACGGATCTGTGGTCCAGTTCAAAATTAAAAGGCACACCCCCCTCAGCAAACTGATGAAGGCCTACTGTGAAAGACAGgGTTTATCCATAAGGCAAATTAGGTTCAGGTTTGATGGTCAGCCAATTAATGAGACGGACACACCTGCACAGCTGGAAATGGAAGATGAGGACACTATCGACGTCTTCCAGCAGCAGACGGGAGGAACCTGCTAAAGAAAAAGCACACGTGGATGAAGCTGGTTTATTTGCGCTCCTCTTCACTTCCACTGCAGTTCAGGGCTGAAATGGAAAAGGTTTTGGAAATCAATTGTTTAAGTTAATAGCTGCTTTTTCTGTTGtcgtttgttttcattttaatcatccAAAGACCTCATTTCCGTTTTTGCAATGATCTCCCTGAACTAAATTGGAAATGACAgttagtaatgtttttttttttttttttcctccccacCTTTTGGAAATTGTATGCCTGTTGTATACGTTTTTGTATTATGTACGTATGTTTGCACCTCCCCcatctatttttatatacaagGAGGGAAGCTTTGTGAAAGAGGATGTTTGTGACTTCTTAGTACGGTCTCGATTTCTTTAATTGTGGTGAACGTCTAAATTTAAGATGCTCTTTTTATGAACAGTTTCGAACGGTGACATTGcagcatttgtttatttctgacaCCTCAGGTTTGATAAAGCTAGATTGTGGATCGTATACCGGtagccatttttaattttaagaacgTTGATGCGTATGTCTTTAAAAGTTTGCTTAAGTATGAATTTCATGATATACAAAACTTAAGTGTTCCCCTTGATTTTATCGTTTCGTAGTTTGCCCTCTGCAAATGCGTCATATTCTTATAGTAACATTGCTCTTATTTAGCCCTTCTGGCGTATCGAGAGTATTAAACGCTGTCCTGGTGTAATTGCAACTCCGCGGTGAATTCAAGCCAAGTTAACGTGTGCGTGTTGCATTGGCAGGGCTGTTTGGGAGAACAGAGGATCCTATGTTGGCCATTtactactgtatataataaatatagtttgatacaga

Function

symbol description
sumo3b Predicted to enable protein tag and ubiquitin-like protein ligase binding activity. Predicted to be involved in protein sumoylation. Predicted to be located in PML body and cytoplasm. Predicted to be active in nucleus. Orthologous to human SUMO3 (small ubiquitin like modifier 3).

NR:

description
PREDICTED: uncharacterized protein LOC106562996

GO:

id name namespace
GO:0016925 protein sumoylation biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12160 SUMO, SMT3; small ubiquitin-related modifier

RNA

RNA id representative length rna type GC content exon number start site end site
TU101615 False 1229 TUCP 0.41 4 8431145 8433483
XM_043249725.1 True 1263 mRNA 0.41 4 8431111 8433483

Neighbor

gene id symbol gene type direction distance location
pttg1ipb pttg1ipb,LOC107749904,LOC107677780,LOC107596555 coding upstream 497 8427846 ~ 8430614 (+)
myo10l3 LOC107677785,LOC107749884,LOC107752883,LOC107668373 coding upstream 4182 8366662 ~ 8426929 (+)
ankzf1 LOC107677786,LOC107749886 coding upstream 81586 8343222 ~ 8349525 (+)
LOC122351256 LOC107668397,LOC107593014,LOC107752910 coding upstream 228175 8176835 ~ 8202936 (+)
fzd7a fzd7,fzd7a,LOC107751502,LOC107752890,LOC107668396 coding upstream 258148 8170166 ~ 8172963 (+)
tspearb tspearb,LOC107749903,LOC107677782,LOC107752923,LOC107593006,LOC107668351 coding downstream 8877 8442360 ~ 8452673 (+)
tra2b LOC107668395,LOC107677789,LOC107592988,LOC107749892 coding downstream 20121 8453604 ~ 8459325 (+)
ehhadh ehhadh,LOC107596516 coding downstream 77229 8510712 ~ 8519346 (+)
zgc:162707 zgc:162707,cunh3orf70,LOC107749877,LOC107596553,LOC107592986 coding downstream 87451 8520934 ~ 8528871 (+)
nup35 nup35,LOC107663916,LOC107749876,LOC107668364,LOC107752922 coding downstream 132971 8566454 ~ 8569997 (+)
G68678 NA non-coding upstream 208294 8222587 ~ 8222817 (+)
G68668 NA non-coding upstream 225148 8203853 ~ 8205963 (+)
G68446 NA non-coding upstream 576833 7853481 ~ 7854278 (+)
G68435 NA non-coding upstream 1094752 7335491 ~ 7336359 (+)
G68397 desma,LOC107688742,LOC107602901,LOC107716787 non-coding upstream 1129616 7280767 ~ 7301495 (+)
LOC122351403 NA non-coding downstream 167241 8600724 ~ 8614984 (+)
G68808 NA non-coding downstream 392729 8826212 ~ 8827046 (+)
LOC122352063 NA non-coding downstream 425990 8859473 ~ 8860379 (+)
G68879 asic4a,asic4,LOC107672268,LOC107663852,LOC107560474,LOC107749871,LOC107571863 non-coding downstream 613977 9047460 ~ 9078537 (+)
G68880 NA non-coding downstream 629637 9063120 ~ 9064676 (+)
si:ch211-167j6.3 NA other upstream 88360 8341295 ~ 8342751 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 2457988 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 2545358 5883927 ~ 5885753 (+)
trnam-cau_112 NA other upstream 2973582 5457458 ~ 5457529 (+)
trnar-ccu_65 NA other upstream 2973848 5457191 ~ 5457263 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other downstream 27261 8460744 ~ 8506143 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 429904 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 433614 8867097 ~ 8871633 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other downstream 709109 9142592 ~ 9150093 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other downstream 722562 9156045 ~ 9160821 (+)

Expression


Co-expression Network