LOC122351945


Basic Information

Item Value
gene id LOC122351945
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10423214 ~ 10435142 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU102185
ttttttatttttattgcaatgaCACGCAccgagaaaatgtttttgttatcgCGCATCGGTTTGAAGAAAATCTCAAATCCGCGCGCGATGAAAGTTTCTTACCTCTATCATAACTTCGACAAAATGTCTCGCGCTGGAAGGAGACTTATACGCGAGATGAGTCATCTGTGAACGCGCACACGAGCGGGTCGCGGCCAAAGCGCTCGGCATCTATCGCGCATCTAAAGGTAAAAGCCCGGTTCCCGCGGCATGCAGCGGAAGCG
>TU102186
GCTGTCTAACTATTGTCGAAAAGTTTTTCACTCTCGTCCGAATCGCTGTCTTAACACCATGTTGTTGATGCTCTGAAAAGTTGTTGCATCCGAGGAAGTTGAACAGCGCTGTATTAAAACTCAAAACTAGCCGCTTGTCAAATCTTCGGCGACAGTCGCTGTGCATAAGTTGCCGGCTGTCTTCGAGAGACGTcgtgttattttaaagtgtgtaaCGGGTTTGCTTTAGAACCGTCTCGAACTGCTCGGTTTTTATTTGTGTCGTCCGTGAAC
>XR_006251821.1
TTCATATTGTCTCCGAGGCAGCTGCTCATCGGTGTCTTTGCACCATTGAACCGTTGTCACGTTTGATCGTTTGTGAGGTGTTGGGAGTACAGAGGATAAACGGGAGGAAAACGAAACGTGTTTGTGTTGAAACAATGAAACAAGGGGCTGTCTAACTATTGTCGAAAAGTTTTTCACTCTCGTCCGAATCGCTGTCTTAACACCATGTTGTTGATGCTCTGAAAAGTTGTTGCATCCGAGGAAGTTGAACAGCGCTGTATTAAAACTCAAAACTAGCCGCTTGTCAAATCTTCGGCGACAGTCGCTGTGCATAAGTTGCCGGCTGTCTTCGAGAGACGTcgtgttattttaaagtgtgtaaCGGGTTTGCTTTAGAACCGTCTCGAACTGCTCGGTTTTTATTTGTGTCGTCCGTGAACGTTTGCGGGGTGTCCACGGCGTGTGCGGAGAGTTTTGGCGAGTGGTCTTTTGTCGTGTTGATTTTCTCATGCGGCGAACAAAGAAGCGCGCAGCAAAGACTCGGGACCCGAGAAGCCCGTGGAAAGTAAGCGCCCTGTTTACAATAATAACACTGGCGTCGTGACGTGCGCTGACTGACGGAGCGCCGAGCCAATGGCGTGCCGCGGTTGCTTCGGCAACACGCTATATTTGGAAAGAGTTACATCATCGGAGGACCGCCTTCGAGGGGGCGGGACATCCGCGAGGATTGACGCGCTTGTCTGGACTTGCCTGCAGTGCGCTTTGTTATTACTTTCCTGGCtgataaagtataaaaaaacgGGTCAAAACACGAAGCGTGTcctttcagcattttaaaagcgCCGAGAAGCTGACACACTAATGATTTACCACGAAACGTTAACGGGCGACCTGGAGGTgctattaaatgtaaagtcgGTCATTTTTACAATTGAGGGGAGGGCGAAAAGTTGACATGATTTGAATTAATTCAGCACTGAAATATTTAGCAAGTGCAAAGGTGgatgaatgaaaaagaaaggagaAGACTGCGTGTTAAAGTGACTTTGGTGTGAATTTGAATGTTGTCGCTGGTGATGCTGGTTTTGTTGCTTATTCACGTATTATGACGGTGGGAGCAAAATAATAGAGTTAATAGTAGAGTTTATAACACGCTACAACTTATACTCCGAGGTTTTGTTGCAGTTCGGGGTGGCCTTTGGGTGGAATTAATACCTAAGGCCTAAATTTGTGCATGCATACATCTTCGGTAGACTGAACTAAAACAAGGGATTTGCTAGGCTATATGACATGGCTAAATAATAACATCCAGCATAGAGGTCAAGAGAAGTGTTTAGATAAAGTTAAGTCACGTCCCAACAGTAGGCATAAAggttttcactttaaaagtagtttattagGCATGCATATATTCGGTGCATTCTGCCCAGTCATCCACGGTGGATAAGTACAGAACAGTTCATGTTCTTTTACTACAGACACACTTCCTGTTCTGTACTTTATCTTCAAATAAAATGAGTCAGTTCCTTTTCCCACTGTGCACAtccactaaaacacaaacacacgtttaGTAGCGCAGACCCGTGTGGGAACACACTCTCTCAGATATTTCACGTTTATTTATGTCAGCGGTGTCGTGCCAGTTTATGCGGGTGTGTCTTcatataagaaatgttttatttcacgtTGTTATTTTAGCTAAAATGTGGGTCGCTTATAACTGCGGAATAAAgccattattgttgttattattatacactAGCTAGCCTCTGCCTCGCTTTGCCGAGTTGCAGTTAACGCTTGCAAACTAGGGCTGAGGTTTAGAAAGAATTTAGTCACACAGCCACCAGATACTCCTAAATGCATCATCAGGGGTTGCCGGTCAAATAGTCGCAAAGCGGTGCCAAATTTTGAAAGTCATTATCCGAATGATGCAGTCGGCGGTAATCAGAAAGGGGCGGATTTGACAGATGGAGCGcagtttctttcttctcccAATCAACCTTCACGCTGCTGGTGGTGTGAGTGACGCAGCTCGCGGTGGCTCGCGCTGTCCGCCGCCGTAGTGAAGCGCAGGCTCTGTTGCCAAGCTACTCGCTTCGTCTTCGCGGAAAACGTCGACTAACGTTCAGCTCGTACCGTGCGTGCGTCCCCGTCGAGCGACTGCACGCGCGCTTTTAGAGAAAGAAAGCGCGAGCGCCGCTGCGTCCCCCTcttaaattgacaaaaataaataaataaataaaaataataaagcgcGCTGGCTTTGTCATACCGTAGTCCCAGAAAAGCAGATACCCCCGCAGACGACGCAACTGATTTTTAATCAACCGAAAGCTTAAACCGCACACGCGCTCGCCTGTCAATAGCACGCAGGGAGATTGCAATGGTAACAATCGTTATTTCAAACGCTGACTGGCAGAGCTACGGTTAAACCGTGCTCCGTTGGCCGTGTAAGGATATCGTGCGTGGGTTCTGGGTTGCTAGCCGGTTTGAGGGTGCATTTTGTCTCGACCAATCCTGCGCGGTGCTCTAGGTCCCGGCATGCCCAATGCGGGCAGGGGGAGGCTCCGGCCAATTTGAATGAAGACTGGAGCTTTCGGCGCCATTTTCGAGTGAGCAGCTACAGCAACAACAGCTGCCTAGAGAGGCTCCGCGCTGTAGTCCAGTAATCGGAGCGAGCGGACACTTTTCCTTTTCGTCTCCAGAAAACAAAGagggattttttttcccagaattccTCCGCAAATTCGAGACGACTGTTTCCCGGTGGATGACTGCGGCGGACGCGAAAGACGGTGCGCGGTGACAACAAATAGTGAAGTGAAGACTGAAGTGAGCTAGGAGGCTAATCCGGCTAGCATCTCCAGCCGAGAAGGGGCGTCCGATTGGAGCCGCGCTCAGGAAACGATAtatttttgccttattttttcgaaaaaaatctaacaaatgcgCGGACGACTtgaaaattctataaaaaattGGGAAAATTCTCGCTGGCGACGACGATTAGATCGGTGCGGCTTGTTCGGCGGAGCCAGgtggttttgtgcattttttaaatgttaagtttGAGCGGGATTGGTGATGTGCGCGAGACGGCCGGCGAGCCCGGCAGCCTATCAGCGCGCGATACACCGGGATGCCACACCGACCGACACTGTCCTATTCTTTACTACAgcttttcttcctctttcagCGACAAAACAACGGTGACTGGAGCGCCTTTTATTTTTCGTTTCTCGGCACGAGCTGTACGTAACGAGCGCGCCGTCCGAATTTTTAACGgcgaacttttttttttcttttttctttttttgtggatTTACAAACACGTCCAGGTGTTTTTTAGAATCGCCTGCATGGTTGACATCAGAAACTAGAAAATGATTCAAGatggAGTCCTGGAATGCCTCGAGCCctgctgagagaaagagagagagggaggagaggagTCACTCGCTCTGTGGTTCTGGCAGTGCTTGGTCATGTTGCCGAGTGTGTGATTGAGAGACGGGGACCCTCTCTAGGTGATGGTGTAGCAGCACAGAATGGTTTGTGGTGATACAGAGATGCAGGCCGTGATGTGCTGCAGCATCAATTCCTGGGACCTACGCAGTCGACAAAGACACCGAGAGAAGAGCGagggattgtgtgtgtgtgagagggagagagagcgagaatgCGTGTGTTGTCTTGCTTTAGCAGCATGTAAATATTGGAGTTACTCCTTGGCCAATGCCTCCAATATTGCTCGTGCTGCTGAAGCAAGAAGTCACCAAGCAGCACATGCACGTCATCTTTTTATCTCAGCTGCCAGGGCCTAGCCGGTGCAGGTAGTGGCTGACTCACTGGTACTGAAATACCTTCATGGACTGAATCATCAGACCAGCGTAGAGAAACCAGGAGGACCCTTGGTCTCACCGGAGCAAACTGAATGGTCAAAGGTAAAGAGAGATGCAGTGTTTTTAGGTTAAATAGCTCATTTTTAATCTTATCTATTTGTTTTAAGCATGTATCATTTTTACCCCTGTATcctgtatatttttttcccagtaaatatatatatatttttaatattccagATCAAATCACTGCTGTGCTGTTCCTTTTGTGTGTTAAtgcaagtaaataataaaactgggGGGAGAGAGGAAAGTCTG
>XR_006251822.1
CAGCGAGTTCTTTctttatgctttttttcacaaaacacaaatatactCTCAAGTATGCTTATGCAGGTGtactgcacagaaaaaaaaatattcatatcaacttttttatttttattgcaatgaCACGCAccgagaaaatgtttttgttatcgCGCATCGGTTTGAAGAAAATCTCAAATCCGCGCGCGATGAAAGTTTCTTACCTCTATCATAACTTCGACAAAATGTCTCGCGCTGGAAGGAGACTTATACGCGAGATGAGTCATCTGTGAACGCGCACACGAGCGGGTCGCGGCCAAAGCGCTCGGCATCTATCGCGCATCTAAAGGTAAAAGCCCGGTTCCCGCGGCATGCAGCGGAAGCGCCGGTCCTACGCCGTCGAGATCAGGGTGGCGTGCGGTTATGACACCCGACTCGGTCGCTGCTCCCTAGCACGTGACCTAATCTGATCCAGCGTGGGTCGCAGGGTTTGAGTCTTGAGTATCTAAGGTCGAGCGCTGGCGCtcggtctttttttttttttttcttcctctcgcGCACAGCCACCGCTCCGCCTCCTCGACGCGCAACTTTGACGCCGCGCATAAATACTGGAACAAAAGAAGAACTTCCTCGATACCTTGTGAAACGGCCGCAAACGACCTGAAACTGTTGCGCGAACCGAAATTCGCCCGTAAACGTGCTAGAGAGGGTGTTTATCAGAGCGCCCGCGCTGGGTCGAGTGATGTCTTCACACACATCCTCAAATTTCCCCGCAGCTCTTTGGAATCGCCTGCATGGTTGACATCAGAAACTAGAAAATGATTCAAGatggAGTCCTGGAATGCCTCGAGCCctgctgagagaaagagagagagggaggagaggagTCACTCGCTCTGTGGTTCTGGCAGTGCTTGGTCATGTTGCCGAGTGTGTGATTGAGAGACGGGGACCCTCTCTAGGTGATGGTGTAGCAGCACAGAATGGTTTGTGGTGATACAGAGATGCAGGCCGTGATGTGCTGCAGCATCAATTCCTGGGACCTACGCAGTCGACAAAGACACCGAGAGAAGAGCGagggattgtgtgtgtgtgagagggagagagagcgagaatgCGTGTGTTGTCTTGCTTTAGCAGCATGTAAATATTGGAGTTACTCCTTGGCCAATGCCTCCAATATTGCTCGTGCTGCTGAAGCAAGAAGTCACCAAGCAGCACATGCACGTCATCTTTTTATCTCAGCTGCCAGGGCCTAGCCGGTGCAGGTAGTGGCTGACTCACTGGTACTGAAATACCTTCATGGACTGAATCATCAGACCAGCGTAGAGAAACCAGGAGGACCCTTGGTCTCACCGGAGCAAACTGAATGGTCAAAGGTAAAGAGAGATGCAGTGTTTTTAGGTTAAATAGCTCATTTTTAATCTTATCTATTTGTTTTAAGCATGTATCATTTTTACCCCTGTATcctgtatatttttttcccagtaaatatatatatatttttaatattccagATCAAATCACTGCTGTGCTGTTCCTTTTGTGTGTTAAtgcaagtaaataataaaactgggGGGAGAGAGGAAAGTCTG

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU102185 False 263 lncRNA 0.49 1 10423315 10423577
TU102186 False 273 lncRNA 0.45 1 10424136 10424408
XR_006251821.1 True 4142 lncRNA 0.47 3 10423990 10435142
XR_006251822.1 False 1577 lncRNA 0.48 3 10423214 10435142

Neighbor

gene id symbol gene type direction distance location
LOC122351943 NA coding upstream 7391 10411680 ~ 10415823 (+)
LOC122351200 LOC107663844,LOC107555219,LOC107706096,LOC107706098,LOC107663847 coding upstream 15176 10405983 ~ 10408038 (+)
LOC122351198 LOC107706096,LOC107663847,LOC107663844,LOC107555219,LOC107706098 coding upstream 17719 10402345 ~ 10405495 (+)
dcbld2 dcbld2,LOC107600392,LOC107655516,LOC107706081 coding upstream 143311 10262378 ~ 10279903 (+)
LOC122351607 abi3bp,LOC107748202,LOC107655519 coding upstream 196562 10208849 ~ 10226652 (+)
spryd7b spryd7b,spryd7,LOC107655514 coding downstream 6928 10442070 ~ 10446473 (+)
cenpj cenpj,LOC107663885,LOC107720130 coding downstream 44280 10479422 ~ 10487305 (+)
arhgap20 arhgap20,LOC107706091,LOC107663900 coding downstream 71168 10506310 ~ 10515066 (+)
dnajc3a dnajc3,dnajc3a,LOC107663878 coding downstream 91003 10526145 ~ 10531299 (+)
hs6st3b hs6st3b,LOC107555209,LOC107733651,LOC107663930,LOC107600438,LOC107720131,LOC107655503 coding downstream 123499 10558641 ~ 10602491 (+)
G69090 NA non-coding upstream 961 10422043 ~ 10422253 (+)
G69089 NA non-coding upstream 2522 10420482 ~ 10420692 (+)
LOC122351843 NA non-coding upstream 243834 10175048 ~ 10179380 (+)
G69042 NA non-coding upstream 315030 10107840 ~ 10108184 (+)
G69034 NA non-coding upstream 352323 10070658 ~ 10070891 (+)
G69080 NA non-coding downstream 13559 10448701 ~ 10457161 (+)
G69075 NA non-coding downstream 13865 10449007 ~ 10458086 (+)
G69109 LOC107555213,LOC107706088,LOC107663820,LOC107720152,LOC107600437,LOC107655505,LOC107655504 non-coding downstream 80164 10515306 ~ 10516332 (+)
G69284 NA non-coding downstream 348323 10783465 ~ 10783702 (+)
G69285 NA non-coding downstream 349220 10784362 ~ 10784599 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other upstream 27984 10328731 ~ 10395230 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other upstream 248431 10167336 ~ 10174783 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other upstream 309858 10092350 ~ 10113356 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other upstream 856217 9443125 ~ 9566997 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other upstream 1262393 9156045 ~ 9160821 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other downstream 586594 11021736 ~ 11030409 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other downstream 1030462 11465604 ~ 11490149 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other downstream 1611357 12046499 ~ 12155804 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other downstream 1999846 12434988 ~ 12452365 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other downstream 2192393 12627535 ~ 12629535 (+)

Expression


Co-expression Network