XLOC_006555 (lzts2a)


Basic Information

Item Value
gene id XLOC_006555
gene name lzts2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 18801094 ~ 18863680 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012686
CAAACTTTGGCATGAGGAGGAGGAGCACGGAGAATGAGCATGTAGGAGAGAAGCAAAGTGATACAGAGAGGAGAAGCAGCAGAAGTACAGTGAACTGACTGGGATTGTACCTCCAGGACAGGCTGGGGAGACGCGAGGAGGCAGCCATGCAGAGCACTATGGgcgacacagtggcacagtaggtagtgctgtcatctcacagcaagaagatcgctggttcgagccgcgactggAGTGTGTGTCCTGGTCGGGTGTTCACCATGGCTCTAGTTCAGGCACTGCCTGTACCCACTGATCACCCAAAGCCCAGTACTGACGTCCAGCAGTGCTGCTCAGTGTCTCACTCCCCCACAGTAGATGTCACTGGCACCATGGGTTCTGTCAGCAGCCTCATCTCTGGACGTACCTACCAGGAACGCCACTGTCGAGCCGCCAGTGACTTTGGTGCCAGATATCGCAAACCCACACCAGCTACAAGCTGTTTTCGACAACAAGAGGGCACACTGCGCAGCTCCAGCTCACAGGAGCAGCTTCTGAACAGTCAGCCTCCTCTACCCGCTAAGAACAAGTCTTCTGCCCTCATCTCGGCTGGCAATGGCAACTATGGCTATTTGAGTGATGAGCCAGTGGGTGATTGGAATGATAATCACGTGAGCACATGCAGCCCATCCAGTGACACTGAAGAACCTTCTGATAACAGAGGCATGAATGGTAACATCGGTGGACCTCCGCCAAAACTCGTCCCAGTGTCAGGCAGGTTGGAAAAGGTAAGTATGGAGAAAATACTGATCCGGCCCACTGCCTTTAAGCCTGTTTTGCCAAAGAACCGCAACTCTGTGCAGTACCTGTCTCCAAGATCAGGAGGCAGTCTGTCTGAAAGCCAGGGCAGTCTCAATCTCCTGCTTCCTGGCACTGGAGCAGGATCGGGCTGTCAGGAGAAGCGCAACTCATACAGTGGGGGACGCAATGCACGGAGTAGCCAGTCCTGCACCATGTCAGACTCAGGCCGCAACTCCCTCTCCAGCCTACCGACCTACAGCAGCACAGGGTACAGCCTGACACAGAGTGAGGTACCTAATGGGCACATGGAAACCACACGCTCTGGCGTTGGCCACGGACACTCTAATTCTGACAGTGGACGATCCTCATCCAGTAAGAGTACAGGGTCTttaagtgggcgtggccagcccCTCTCGGACAGCGGTTCATGTGGCCGCTCCCCAGCTCCAGGAGAAGGATATGAAGGTGTCATTCGGGAACTTGAGGAGAAGCTGAGGGAAAGAGACTTGGAGCTGCAGCAACTCAGGGACAACCTGGATGAAAATGAGGCAGCCATATGTCAGGTAATGATCCTAGATTTCTACcagtttttacaacagtttgacaggAAATTATCATACACGATACAACTTAAATCATCTGTATTCTCAATGCAGGTGTATGAGGAGAAACAGAAGCGCTGTGAGCAAGAAATGGAGGATCTTCGGCAGAGCTGTGCATCAAAAATGAAGCAGGTGCAGCTGAAGGCACAACGTGCTCAGCAGGTTCTACAGTTGCAGGTGTTTCAACTGCAGCAGGAGAAAAAGAAATTACAGGAGGACTTCTCCCAACTGCTGCAGGAACGGGAGGCATTGGAAAAGAGATGTGCCTCCTTTGAGAGGGAGCAGACTCAATTTGGCCCTCGTCTAGAGGAGACAAAGTGGGAGGTGTGTCAGAAATCAGGGGAGATCTCTTTGCTAAAACAGCAGCTGAAGGATGTACAGGCAGATCTTGGCCAGAAGGCCAGTGAAATTGTTGCTTTGAAGGCCCAGTTGAGAGAGGCTCGTTCTGAGCTTCAAGCTAGCCAGGCTCGCTCTCAGGAAGCCCACGCCACAGCTCGCACACGCACACTTGAACTGGAGGTTTGCGAAAATGAGTTGCAACGCCGTAAAAGTGAAGCTGAGCTCCTTCGGGAGAAGATGGGTCGTTTGGAAGAAGAGTCCCTTCGTCTTAAAGAAGCTATGGCTGTGCCCACACCCCAAACTCTTCCTTCTAAGGGCCAATCCATGAGCTTGCCACTCCCCCAAAGCCGTGGGGGGATTGGTCATGGGATAAGCCCTGCTTTCCGGGACAACAGCAGTGAAGAGCAACTTCTTGCATATGAGAGTGATGAAGCAAAGGCACAGCGCCAGAGCGTAGATGTGCTTCATGGTCTCCGTCAGCAGGTGGACCGCCTTCGGGCAGAGCTGATGTATGAGAGGAGGCGAAGCGAAGACCAGCTTGAGGGCTTTGAGGATGAACGCAGGGTGTGGCAGGAAGAAAAAGACAAGGTGATTCGTTACCAGAAGCAGCTGCAGCAGAACTACATCCAGATGTACCGCAGAAACCGCGACCTTGAGCGTGTGATGAGGGAACTTAGTCTGGAGCTGGAAAACAGGGACATGGAGGAGTTTGACATGCGTAGCAACGAGATCCATTTTGAAGAGATAACTGCCACTGAAATCTAA
>TCONS_00012687
taaatTTAAACCTTTTACAGATTATGCATAAAAAAtgtgactcaaaaaaaaaatcgaagCTCATCTgaactctgaattctgacttatCTGAGGCCAAAGAGAGAGAAAAACGACCCCTCAGACAACCCTGACCTTATCATTCTTTCTCTGTAACATAATAACAGGCTTTCACCTTGACACCTTAACTAATTCTCCATAGCAGGTGCATGACGTACGATATGCACACTTGAGCTCTTAAATCGACAAAAGGAAAAGCCTCTCTATTCATTCTCATActttaacattgtttttaataGACGTACTGTATGGAAAGTTTTAACAGCAGTTGTGAATTTTTCCTCAGTTTTCAGTCTGTTGAATGTCTTTTGCGTGCTTTACCTGACCTCAATGTGTATGTTttcctgcaggtgtgtgtgtatgtgagcagAGCTGGACACTGCTGTGGGACTCTGGGGATGAGTAAAGTCTCCATACGTCCAGGATCTCTGCAGCTTCTAGGAGCCGCTCTCCAGGCATCTGTGCAAGAGTGTGTGTCCTGGTCGGGTGTTCACCATGGCTCTAGTTCAGGCACTGCCTGTACCCACTGATCACCCAAAGCCCAGTACTGACGTCCAGCAGTGCTGCTCAGTGTCTCACTCCCCCACAGTAGATGTCACTGGCACCATGGGTTCTGTCAGCAGCCTCATCTCTGGACGTACCTACCAGGAACGCCACTGTCGAGCCGCCAGTGACTTTGGTGCCAGATATCGCAAACCCACACCAGCTACAAGCTGTTTTCGACAACAAGAGGGCACACTGCGCAGCTCCAGCTCACAGGAGCAGCTTCTGAACAGTCAGCCTCCTCTACCCGCTAAGAACAAGTCTTCTGCCCTCATCTCGGCTGGCAATGGCAACTATGGCTATTTGAGTGATGAGCCAGTGGGTGATTGGAATGATAATCACGTGAGCACATGCAGCCCATCCAGTGACACTGAAGAACCTTCTGATAACAGAGGCATGAATGGTAACATCGGTGGACCTCCGCCAAAACTCGTCCCAGTGTCAGGCAGGTTGGAAAAGAGTATGGAGAAAATACTGATCCGGCCCACTGCCTTTAAGCCTGTTTTGCCAAAGAACCGCAACTCTGTGCAGTACCTGTCTCCAAGATCAGGAGGCAGTCTGTCTGAAAGCCAGGGCAGTCTCAATCTCCTGCTTCCTGGCACTGGAGCAGGATCGGGCTGTCAGGAGAAGCGCAACTCATACAGTGGGGGACGCAATGCACGGAGTAGCCAGTCCTGCACCATGTCAGACTCAGGCCGCAACTCCCTCTCCAGCCTACCGACCTACAGCAGCACAGGGTACAGCCTGACACAGAGTGAGGTACCTAATGGGCACATGGAAACCACACGCTCTGGCGTTGGCCACGGACACTCTAATTCTGACAGTGGACGATCCTCATCCAGTAAGAGTACAGGGTCTttaagtgggcgtggccagcccCTCTCGGACAGCGGTTCATGTGGCCGCTCCCCAGCTCCAGGAGAAGGATATGAAGGTGTCATTCGGGAACTTGAGGAGAAGCTGAGGGAAAGAGACTTGGAGCTGCAGCAACTCAGGGACAACCTGGATGAAAATGAGGCAGCCATATGTCAGGTGTATGAGGAGAAACAGAAGCGCTGTGAGCAAGAAATGGAGGATCTTCGGCAGAGCTGTGCATCAAAAATGAAGCAGGTGCAGCTGAAGGCACAACGTGCTCAGCAGGTTCTACAGTTGCAGGTGTTTCAACTGCAGCAGGAGAAAAAGAAATTACAGGAGGACTTCTCCCAACTGCTGCAGGAACGGGAGGCATTGGAAAAGAGATGTGCCTCCTTTGAGAGGGAGCAGACTCAATTTGGCCCTCGTCTAGAGGAGACAAAGTGGGAGGTGTGTCAGAAATCAGGGGAGATCTCTTTGCTAAAACAGCAGCTGAAGGATGTACAGGCAGATCTTGGCCAGAAGGCCAGTGAAATTGTTGCTTTGAAGGCCCAGTTGAGAGAGGCTCGTTCTGAGCTTCAAGCTAGCCAGGCTCGCTCTCAGGAAGCCCACGCCACAGCTCGCACACGCACACTTGAACTGGAGGTTTGCGAAAATGAGTTGCAACGCCGTAAAAGTGAAGCTGAGCTCCTTCGGGAGAAGATGGGTCGTTTGGAAGAAGAGTCCCTTCGTCTTAAAGAAGCTATGGCTGTGCCCACACCCCAAACTCTTCCTTCTAAGGGCCAATCCATGAGCTTGCCACTCCCCCAAAGCCGTGGGGGGATTGGTCATGGGATAAGCCCTGCTTTCCGGGACAACAGCAGTGAAGAGCAACTTCTTGCATATGAGAGTGATGAAGCAAAGGCACAGCGCCAGAGCGTAGATGTGCTTCATGGTCTCCGTCAGCAGGTGGACCGCCTTCGGGCAGAGCTGATGTATGAGAGGAGGCGAAGCGAAGACCAGCTTGAGGGCTTTGAGGATGAACGCAGGGTGTGGCAGGAAGAAAAAGACAAGGTGATTCGTTACCAGAAGCAGCTGCAGCAGAACTACATCCAGATGTACCGCAGAAACCGCGACCTTGAGCGTGTGATGAGGGAACTTAGTCTGGAGCTGGAAAACAGGGACATGGAGGAGTTTGACATGCGTAGCAACGAGATCCATTTTGAAGAGATAACTGCCACTGAAATCTAA
>TCONS_00012688
GCACGGAGAATGAGCATGTAGGAGAGAAGCAAAGTGATACAGAGAGGAGAAGCAGCAGAAGTACAGTGAACTGACTGGGATTGTACCTCCAGGACAGGCTGGGGAGACGCGAGGAGGCAGCCATGCAGAGCACTATGGAGTGTGTGTCCTGGTCGGGTGTTCACCATGGCTCTAGTTCAGGCACTGCCTGTACCCACTGATCACCCAAAGCCCAGTACTGACGTCCAGCAGTGCTGCTCAGTGTCTCACTCCCCCACAGTAGATGTCACTGGCACCATGGGTTCTGTCAGCAGCCTCATCTCTGGACGTACCTACCAGGAACGCCACTGTCGAGCCGCCAGTGACTTTGGTGCCAGATATCGCAAACCCACACCAGCTACAAGCTGTTTTCGACAACAAGAGGGCACACTGCGCAGCTCCAGCTCACAGGAGCAGCTTCTGAACAGTCAGCCTCCTCTACCCGCTAAGAACAAGTCTTCTGCCCTCATCTCGGCTGGCAATGGCAACTATGGCTATTTGAGTGATGAGCCAGTGGGTGATTGGAATGATAATCACGTGAGC

Function

symbol description
lzts2a Enables beta-catenin binding activity. Acts upstream of or within several processes, including cell migration involved in gastrulation; convergent extension; and regulation of signal transduction. Predicted to be located in cytoplasm; microtubule cytoskeleton; and midbody. Is expressed in several structures, including digestive system; nervous system; otic vesicle; pectoral fin bud; and tail bud. Orthologous to human LZTS2 (leucine zipper tumor suppressor 2).

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0051168 nuclear export biological_process
GO:0030513 positive regulation of BMP signaling pathway biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0051255 spindle midzone assembly biological_process
GO:0007049 cell cycle biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0051013 microtubule severing biological_process
GO:0051301 cell division biological_process
GO:0060026 convergent extension biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005813 centrosome cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0030496 midbody cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-276 Enables beta-catenin binding activity. Acts upstream of or within several processes, including cell migration involved in gastrulation; convergent extension; and regulation of signal transduction. Predicted to be located in cytoplasm; microtubule cytoskeleton; and midbody. Is expressed in several structures, including digestive system; nervous system; otic vesicle; pectoral fin bud; and tail bud. Orthologous to human LZTS2 (leucine zipper tumor suppressor 2).

Ensembl:

ensembl_id ENSDARG00000074597

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012686 False 2486 mRNA 0.53 5 18801094 18835278
TCONS_00012687 False 2682 mRNA 0.51 5 18801094 18863680
TCONS_00012688 True 561 mRNA 0.55 2 18803714 18835254

Neighbor

gene id symbol gene type direction distance location
XLOC_006554 CR932361.2 coding downstream 85668 18715310 ~ 18715426 (-)
XLOC_006553 sfxn3 coding downstream 105805 18677428 ~ 18695289 (-)
XLOC_006552 CR932438.2 coding downstream 151412 18649492 ~ 18649682 (-)
XLOC_006551 CR932438.1 coding downstream 156089 18644890 ~ 18645005 (-)
XLOC_006550 mat1a coding downstream 163850 18628920 ~ 18637244 (-)
XLOC_006556 NA coding upstream 146492 19010172 ~ 19016833 (-)
XLOC_006557 NA coding upstream 412493 19276173 ~ 19277332 (-)
XLOC_006558 NA coding upstream 474797 19338477 ~ 19339436 (-)
XLOC_006559 NA coding upstream 487171 19350851 ~ 19357011 (-)
XLOC_006560 rab11fip2 coding upstream 746882 19610562 ~ 19642288 (-)
XLOC_006471 BX537274.2 misc downstream 8536189 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 17974869 825904 ~ 826225 (-)
XLOC_006541 NA non-coding downstream 1107275 17686484 ~ 17693819 (-)
XLOC_006540 NA non-coding downstream 1270558 17494297 ~ 17530536 (-)
XLOC_006562 AL954359.2 non-coding upstream 1353810 20217490 ~ 20222134 (-)

Expression


Co-expression Network