LOC122351858 (slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529)


Basic Information

Item Value
gene id LOC122351858
gene name slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11396666 ~ 11493120 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU102798
TGAGGATCAGGATAAGCAGAATTACGCTTTGGAGAATGGTGGCTTTCAGTATTGATGAGAATGGCAACACTGAGAATAAGGATAAAGGTACAAAGTTGTGAGCCAAACATTGTTCTGCAAGCATGTGTGACCAAAGCGGTCACACAGTTTTCTGAAGGCATGAACTTTAAACAAGCTATTCAAGCTCAACTAGTGAGTATATCGATAAACTCATTTTCAGTCGAGACAACTGGATGCACTTTTCCATGTTataaaaagcctttaaatatatatatatatatatatatatatatatatatatat
>XM_043249224.1
CAGGTAAAAGTTCActttttgtcacccaggatgcAGGAAAGAGGGCACTAAGAGGGGAAAAGgtgtttctaaaaatgtaaaaaaaaaacaatctggaATCTTAGCTCGCTTTGTCAAAGAAGCATCATCACCTCAATCATTCGATTGGAACCTACACCATCTTCCCTACAGGATCCTACTTTATTTCTTCACTACTTTATTTAAACTCACTTTTCTCAACATGTGCAATCAACCAGACCCCGTCTGCCCCATGAACGCTACCATCTGCACGGGCACGTCCTGCCTGGTGCCCTATGATCCGTTCAATGACATCCTCAGCACGGTGATGAGCACCACGCTTACCATCATGCTGGCTTTGGTCATGTTTTCGATGGGTTGCACTGTTGAAGCAAGAAAGCTGTGGGTGCACATCCGCAGACCCTGGGGCATTTTTATCGGTTTCCTGTGCCAGTTTGGCATTATGCCTTTTACAGCTTTTGCGCTTTCGTTGATTTTCAACGTGCTTCCAATCCAGGCTGtagtcatcatcatcatgggCTGTTGCCCCGGAGGTTCCAGCTCTAATGTCTTCTGCTACTGGCTCGATGGAGACATGGACCTAAGCATCAGCATGACCACATGTTCTTCAATTCTGGCTCTGGGAATGATGCCTCTTTGTCTTCTCATCTACACCACAGTGTGGACTTCAGGCGATGCTATCCAGATCCCTTACGACAGCATCGGAACAACATTAGTGGCTTTACTTGTGCCTGTCTGTCTTGGGATATACACGAAACACAGGTGGCCCAAAGCAGCCAAAAAGATCCTCAAAGTGGGATCTGTGGTTGGAATCCTTCTAGTCATCGTCATTGCAGTCATAGGTGCTGTTCTGTATCAGTCCTCGTGGACCATTGCTCCTTCGCTTTGGATAATCGGTACCATTTATCCATTCATTGGCTTTGGTCTCGGCTTTCTCCTGTCACGCTTTGTGGGACAGCCTTGGCACAGGTGCCGCACCATTGCTTTAGAAACAGGCATGCAGAACTCCCAGCTGGCCAGTACTATTACCCAGCTTTCCTTTAGCCCTGCGGAGCTTGAGCTCATGTTTGCTTTCCCCTTAATCTACAGTATCTTCCAACTAGTTGTAGCTGGGATTGCAATAGGAATTTATTACTCAATAAAGCGCTGTAGGGGGGGTGCATCAGAGGAGGATGGGGAAGGCGCGCGGAGCACAGTTGAGGATCAGGATAAGCAGAATTACGCTTTGGAGAATGGTGGCTTTCATATTGATGAGAATGGCAACACTGAGAATAAGGATAAAGGTACAAAGTTGTGAGCCAAACATTGTTCTGCAAGCATGTGTGACCAAAGCGGTCAGCACTGACCTTCTGAAGGCATGAACTTTAAACAAGCTATTCAAGCTCAACTAGTGAGTATATCGATAAACTCATTTTCAGTCGAGACAACTGGATGCACTTTTCCATGTTataaaaagcctttaaatatatatatatatatatatatatatatatatatatatatatatatat

Function

symbol description
slc10a2 Predicted to enable bile acid:sodium symporter activity. Acts upstream of or within organic hydroxy compound transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in apical plasma membrane. Is expressed in cloaca; gut; and intestine. Human ortholog(s) of this gene implicated in intestinal disease. Orthologous to human SLC10A2 (solute carrier family 10 member 2).

NR:

description
PREDICTED: ileal sodium/bile acid cotransporter-like

GO:

id name namespace
GO:0015711 organic anion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008508 bile acid molecular_function

KEGG:

id description
K14342 SLC10A2, ASBT; solute carrier family 10 (sodium/bile acid cotransporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU102798 False 303 lncRNA 0.34 3 11396676 11493120
XM_043249224.1 True 1529 mRNA 0.45 6 11396666 11399215

Neighbor

gene id symbol gene type direction distance location
LOC122351856 tlr20f,tlr20.2,LOC107598181 coding downstream 3 11392240 ~ 11396663 (-)
tlr20.4 tlr20.2,tlr20f,LOC107598181 coding downstream 7288 11386377 ~ 11389378 (-)
lcmt2 lcmt2,LOC107663870,LOC107698535 coding downstream 164978 11225956 ~ 11231688 (-)
rab5b rab5b,LOC107551955,LOC107738511,LOC107598172,LOC107698530,LOC108430508,LOC108266395 coding downstream 180012 11210200 ~ 11216654 (-)
armc8 armc8,LOC107598169,LOC107551954,LOC107733643,LOC107663904,LOC107738509 coding downstream 191698 11193693 ~ 11204968 (-)
efnb2a efnb2a,efnb2,LOC107555860,LOC107563180,LOC107675360,LOC105018709 coding upstream 489848 11982968 ~ 12000692 (-)
arglu1a arglu1a,LOC107555859,LOC107673121,LOC107711396,LOC107577473,LOC107675355,LOC106586866 coding upstream 510884 12004004 ~ 12009937 (-)
zeb2a zeb2a,LOC107711399,LOC107675348,LOC107563183 coding upstream 703634 12196754 ~ 12244788 (-)
itm2bb itm2bb,itm2b,LOC107673124,LOC107709423,LOC107601060 coding upstream 952432 12445552 ~ 12452338 (-)
slc39a10 slc39a10,LOC107673130,LOC107709428,LOC107724029,LOC107675357 coding upstream 1126156 12619276 ~ 12640868 (-)
G69467 NA non-coding downstream 30847 11358950 ~ 11365819 (-)
G69396 NA non-coding downstream 366173 11029377 ~ 11030493 (-)
G69362 NA non-coding downstream 442681 10947044 ~ 10953985 (-)
LOC122351427 NA non-coding downstream 449922 10930480 ~ 10946744 (-)
G69361 NA non-coding downstream 451611 10944439 ~ 10945055 (-)
LOC122351998 NA non-coding upstream 297661 11790781 ~ 11954234 (-)
G69596 NA non-coding upstream 592594 12085714 ~ 12156439 (-)
LOC122351183 NA non-coding upstream 774992 12268112 ~ 12270147 (-)
G69607 NA non-coding upstream 786673 12279793 ~ 12280197 (-)
LOC122351337 NA non-coding upstream 810594 12303714 ~ 12321820 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other downstream 710039 10680158 ~ 10686627 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other downstream 877209 10515272 ~ 10519457 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other downstream 953047 10433507 ~ 10443619 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 1486488 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 3301819 8076468 ~ 8094847 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 3827 11496947 ~ 11500495 (-)
gtdc1 gtdc1,LOC107709416,LOC107555857,LOC107563182,LOC107675364,LOC107673117 other upstream 598011 12091131 ~ 12194961 (-)
G69650 NA other upstream 929309 12422429 ~ 12423446 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other upstream 1025164 12518284 ~ 12582425 (-)
LOC122351186 adcy5,LOC107555914,LOC107660638,LOC107596066,LOC107661140,LOC106586396,LOC107745452,LOC107668560,LOC107695824,LOC107716189,LOC107568450,LOC108433131 other upstream 1214856 12707976 ~ 12720690 (-)

Expression


Co-expression Network