CI01000000_00639336_00658655


Basic Information

Item Value
gene id CI01000000_00639336_00658655
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 639152 ~ 659048 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_00639336_00658655.mRNA
ATATAAAAATGAAGACTAAAAGTCTTCTGAAGATGCTGAAGTAAAACAAGCGCATAAATTAGGAAAAGGCTACCCAACAATACCCAACTGTTGGATGTCCCAGTGGGTGCTGTTGTTCAATTATCAAGCAGATCAAACAACCGAGTAGCAGTCTTAAAAATTGGATGCCCCAGTGTGAACAAGAATGACATGTGAGAAAAACTGCGGAGGAGCCAACGATCACTTTGAAGGAGTTACAGAGTTCAGCAGACTGAAGCACTGCACCAATTATAGCGCAACATCTCTCTCTGCCGTTACCATAGTAGCGCCGTGCTCCTGTTCCCCTGGAACGAATGAACCGTGGGGGAGCGAATATCTTATCAACCATCGCCCTGGTTACCGCGCGCTCTCTCTCTACGCGTTCCCCGTCGCTCGAGGCTTCAATGCATGTCTCAACACAAGCGTCATGCACTGTGACGCTCAACATGAAAACGTTACAGATAACATTACAGAAGGCCGATTCACGAGGTTGCTAGACATTGTGTCATACAGCTCAATGTGTCGCAATGATACAAAAGGACTGTGGTTTCCAGCTGACCAATCCCATAAGGCTGCAAGAAAAAGAAGGCAGGTCCTACGCATAGCTGTGTTTACAAGCGCCACAGTGTTCCGAGTGGGAGTGGCGTCAACCGTCCATCGGGAGTCCTTCATTATGGGATGGAAGTCATGGGGGGAGGGTTCAGCTGCCCTACGGAAACCATCGGAAAGGAGCTCCGGTTGGCAGCATCACCTTCTTAGAAAGACAGGAAAGACAGAGGAAGGAAACAAGGAAAGAAAACAGCATGAGTCATTGATAATTCGACATAAACATCAACAATGGAACAGGGTAGTCTATGGCTGTGGGACTTTGGGAGAGTGGAGACAACGGCAGCGTTTGCTGGGAAGACGTCCAGAACGAAAGAACGAAGGACCGAGGGAGAAAAAGAGGGAGGGGAGCGTTCCCTTCATCGTGAAGTAACATGCACAGGCAATGACTTCACCTTACATGACCTAGTCCCTCTCTCTGTTTCCCAAACACACTCTCCCATTACTCTCTGACAGGGCTTTGGCGTTTGTACACGCACACACACGCATCCAGACCCCCTTTTCCCTCATCGACCCCACAGACAAGCCAACACAGATGGGCTGTCGGCCCATGCACATGGCCAATCAGACAGAGCGTGAGTGCATGGACAGACACACGCTCTCTCTCTCTCTCACACACACACACATACACACAAACACTCACCAGATTAATTTCAAAGGTTATTTTTTAACCCATCATCTCCTCTGTGTCTCTACATCAAACACAAACACATAAACATACACAAATACACAGGAATGAAAGTAAGAATAGAGGATCAAGGGCACA
>TU411
CAATTATCAAGCAGATCAAACAACCGAGTAGCAGTCTTAAAAATTGGATGCCCCAGTGTGAACAAGAATGACATGTGAGAAAAACTGCGGAGGAGCCAACGATCACTTTGAAGGAGTTACAGAGTTCAGCAGACTGAAGGTGCACCAGTCAAGCATATCAAACGCTCTGACACTAGCCTGTATGGGAGGGTTGCACAAAAGAAGCCATTACTCAAAGGAACCATGTGAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_00639336_00658655.mRNA False 1390 mRNA 0.48 7 639152 659048
TU411 True 231 lncRNA 0.46 1 639269 639499

Neighbor

gene id symbol gene type direction distance location
CI01000000_00588173_00605818 NA coding upstream 32956 587868 ~ 606196 (+)
CI01000000_00264365_00265448 NA coding upstream 373646 264365 ~ 265506 (+)
CI01000000_00260299_00262433 NA coding upstream 375628 260299 ~ 263524 (+)
CI01000000_00252240_00259416 SPON2B, SPON2 coding upstream 379304 252240 ~ 259848 (+)
CI01000000_00127682_00128077 NA coding upstream 511075 123554 ~ 128077 (+)
CI01000000_00678887_00679319 NA coding downstream 19664 678712 ~ 680447 (+)
CI01000000_00753279_00782484 PPP3CA, PPP3CB coding downstream 94231 753279 ~ 782484 (+)
CI01000000_00814932_00820795 NA coding downstream 155884 814932 ~ 820875 (+)
CI01000000_00825374_00827067 NA coding downstream 166197 825245 ~ 827766 (+)
CI01000000_00948279_00956688 NA coding downstream 289231 948279 ~ 957335 (+)
G336 NA non-coding upstream 11279 627609 ~ 627873 (+)
G334 NA non-coding upstream 21360 617513 ~ 617792 (+)
G333 NA non-coding upstream 21827 617046 ~ 617325 (+)
G330 NA non-coding upstream 28610 610342 ~ 610542 (+)
G318 NA non-coding upstream 64843 574063 ~ 574309 (+)
G396 NA non-coding downstream 192711 851759 ~ 852279 (+)
G399 NA non-coding downstream 198267 857315 ~ 857515 (+)
G408 NA non-coding downstream 219430 878478 ~ 878769 (+)
G412 NA non-coding downstream 233353 892401 ~ 892633 (+)
G454 NA non-coding downstream 265438 924486 ~ 924704 (+)
G252 NA other upstream 132080 503209 ~ 507072 (+)
G350 NA other downstream 12794 671842 ~ 676937 (+)
G435 NA other downstream 766073 1425121 ~ 1432854 (+)
G579 NA other downstream 1156405 1767917 ~ 1908808 (+)
G2774 NA other downstream 3794730 4453778 ~ 4454232 (+)
G2850 NA other downstream 4066938 4725986 ~ 4726482 (+)
G339 NA non-coding downstream 396 639895 ~ 640185 (+)
G344 NA non-coding downstream 6045 645544 ~ 645774 (+)
G243 NA non-coding downstream 7226 646725 ~ 691607 (+)

Expression


Co-expression Network