G69834 (col6a3,LOC107685998,LOC107567775,LOC107670696)



Basic Information


Item Value
gene id G69834
gene name col6a3,LOC107685998,LOC107567775,LOC107670696
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13289693 ~ 13304591 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU103281
TTGATCTGGGGAATAGGATCGAGGGGCTCGGATAGCGGCGAACTGCAGAGAATTTCATACGACCCCAGTTATGCTCTGTCCGTGTCCGACTTCAGTGAGCTCCCAAATGTCCAAGAGCAGCTGCTTGCCTCTGTCCAGGATGTTGCAATGCCCTTCACTCCAACTTCCTCGACTCCGACCGCTGATGACGCCATACCCAGAAAGGACGTAGTGTTCCTGCTGGACGGTTCGGATGGCACTAGAAATACTTTCCCAGCGATGCGTGACTTTGTGCAAAGATTAGTGGAGCAATTCAACATAGATGCAAACAGAGACCGCGTTGCCGTGGTGCAGTACAGTAGAGACGCAGAGGTCAATTTCTATCTGAATGCCTACACAACAAAAGGGGAGATCTTGAGCTCTGTCCGAGGTCTGAGGCATAGAGGAGGGAGACCCCTCAACACTGGAGCAGCTCTCCAGTACGTGAGGGACAATGTCTTCACCGCCTCTGCGGGGAGTAGAAAGCAAGCGGGCGTCCCTCAGGTTCTCGTCCTCCTCAGTGGAGGACGGTCAAGCGATAACATAGATACACCTGCCTCCGCCTTGAAACAGAGCGGGATCTTGATTTTTGGCGTCGGCACCAGAAATTCCAGCAGAGAGGTGCAGAGAATTGTCAATGATCCTTCCTATGCACAGTCCGTCAATGAATTCTCTGACCTTCCCAGTGTCCAACAGCAGTTTACCAGCTCCCTCAACAACGTGCTCGGTCAAGTCAAGCCCATGACAACTACTGTGCCGGGTAAGACAGACTCTCGCGCTCC

Function


symbol description
col6a3 Predicted to enable serine-type endopeptidase inhibitor activity. Acts upstream of or within axon extension and motor neuron axon guidance. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in head. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy; dystonia 27; and muscular dystrophy. Orthologous to human COL6A3 (collagen type VI alpha 3 chain).

NR:

description
PREDICTED: collagen alpha-3(VI) chain-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU103281 True 800 TUCP 0.53 3 13289693 13304591

Neighbor


gene id symbol gene type direction distance location
LOC122351699 LOC107567775,LOC107739950,LOC107670696 coding upstream 11097 13275992 ~ 13278596 (+)
rpe rpe,LOC107695573,LOC107725216,LOC106919839 coding upstream 54424 13232306 ~ 13235269 (+)
ackr3a ackr3a,LOC107670701,LOC107555037,LOC107725223,LOC107695574,LOC107571721 coding upstream 64557 13219623 ~ 13225136 (+)
LOC122351306 LOC107695589,LOC107555072,LOC107725238,LOC107601065,LOC107571720,LOC107739951,LOC107670699,LOC107555073 coding upstream 76152 13211745 ~ 13213541 (+)
tyw5 tyw5,LOC107725219,LOC107728297 coding upstream 110306 13176613 ~ 13179387 (+)
asb18 asb18,LOC107723656,LOC107686685,LOC107567774 coding downstream 58475 13363066 ~ 13370927 (+)
LOC122352182 LOC107685564,LOC107723675,LOC107725243,LOC107695580 coding downstream 67002 13371593 ~ 13386493 (+)
serpine3 serpine3,LOC107555035,LOC107567776,LOC107725220,LOC107695567 coding downstream 82069 13386660 ~ 13400112 (+)
wdfy2 wdfy2,LOC107725248,LOC107685482,LOC107723695,LOC107695578 coding downstream 107196 13411787 ~ 13419851 (+)
trnal-caa NA coding downstream 119123 13423714 ~ 13423826 (+)
G69796 stk17b non-coding upstream 155854 13130098 ~ 13133839 (+)
G69789 NA non-coding upstream 181861 13107595 ~ 13107832 (+)
G69783 NA non-coding upstream 182936 13106280 ~ 13106757 (+)
G69723 NA non-coding upstream 449542 12837719 ~ 12840151 (+)
G69718 NA non-coding upstream 515843 12773334 ~ 12773850 (+)
G69985 NA non-coding downstream 211098 13515689 ~ 13518237 (+)
G70021 NA non-coding downstream 364515 13669106 ~ 13669444 (+)
G70029 map3k19,LOC107684057,LOC107723646,LOC107555330,LOC107725236,LOC107658294 non-coding downstream 381205 13685796 ~ 13686466 (+)
LOC122351436 LOC107555330 non-coding downstream 382074 13686665 ~ 13689033 (+)
G70032 NA non-coding downstream 387623 13692214 ~ 13692487 (+)
G69755 NA other upstream 303715 12984868 ~ 12985978 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other upstream 486285 12732298 ~ 12803408 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other upstream 660158 12627535 ~ 12629535 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other upstream 837328 12434988 ~ 12452365 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other upstream 1133889 12046499 ~ 12155804 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other downstream 371572 13676163 ~ 13684835 (+)
LOC122351767 NA other downstream 1282491 14587082 ~ 14589439 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other downstream 2096536 15401127 ~ 15425361 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other downstream 2403610 15708201 ~ 15715901 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other downstream 2429979 15734570 ~ 15789702 (+)

Expression



Co-expression Network