LOC122351987


Basic Information

Item Value
gene id LOC122351987
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13228154 ~ 13232210 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU103357
AAAAACTCCAAAACAACGCAGTACACACCGTTTTCCTCTCAAAGACAGGCAAAGACGGGTTTCTAATTCACCAGCTTTCACCTATGTACAGTGGCTCTGATGAGCTTGACTGTTTACAAAAGGACGTCCTAAAGGCCTCTCCTTTCCGATCCTTTGAGTCTAGCTGACAACTCGGCCTGCGGCGGATATGTCCTTTTCCCATCTTCACAGAGGCTCTGACGTGAGAAACACTGTCTCAGCTGCGTTCCTCTGATTTCTCATATTAGAGGACAGCACTAGTTCTGCAGGGGTCCGATCTCTGAGCCAACAGAAGAAACAGATGGTAAAAAATGAGATTGGAGGATGGGTTTACAAAGTTATATTATTCAcagtttttgatcaaaaatataattgtaacaAAAGGAATAGAAATCCTATTTTTCATATATCTGCTGCTGAAGAATTCAGTTTTGTTCAGTCTCTgttaacaaaacacaacaaactttTATTAGATGAGACAGGGGTCAATACGTACATTTCTGCAATTTGGCAGATACGATGTAACATAACTTTAGCCTAT
>XR_006251825.1
ATTAACCTAAAAACTCCAAAACAACGCAGTACACACCGTTTTCCTCTCAAAGACAGGCAAAGACGGGTTTCTAATTCACCAGCTTTCACCTATGTACAGTGGCTCTGATGAGCTTGACTGTTTACAAAAGGACGTCCTAAAGGCCTCTCCTTTCCGATCCTTTGAGTCTAGCTGACAACTCGGCCTGCGGCGGATATGTCCTTTTCCCATCTTCACAGAGGCTCTGACGTGAGAAACACTGTCTCAGCTGCGTTCCTCTGATTTCTCATATTAGAGGACAGCACTAGTTCTGCAGGGGTCCGATCTCTGAGCCAACAGAAGAAACAGATGGTAAAAAATGAGATTGGAGGATGGGTTTACAAAGTTATATTATTCAcagtttttgatcaaaaatataattgtaacaAAAGGAATAGAAATCCTATTTTTCATATATCTGCTGCTGAAGAATTCAGTTTTGTTCAGTCTCTgttaacaaaacacaacaaactttTATTAGATGAGACAGGGGTCAATACGTACATTTCTGCAATTTGGCAGATACGATGTAACATAACTTTAGCCTATacttgtgtgttataaatacttttatactaataaaatgtattatatgcttaatattaaatgtatgtgctgctattaaacactttatttaacagatgattgtgatataataataataataagtaatacttttaaaataccaGCTGATAAAGCTTCTAGAGATTTAATGAACAGTGATCTCTTGCCGTCAAATCTGCAGACAAATGCTTGTAGCTGTAGGCAGACTTTCTGTTTGGTTAGTATTGCGGTGCTATGGTTTGGATCATGTTCCTCCTGGTGAGTTTACCTGTCATGCTATGCCTCTGTGATGAATGATGCCTCCAGGGAGTCTGCAGTCACCTGTTTGTTTATTGATGTAAATGGAGCTGGGTACTAAACAGGCCAACTGAAACAGTCAGAAAAGGGCCTACTAAACTGAATAGGCCATTAAGGTTGACAAATGTGttggcaaaaaacaaacaaacaatctgTCCTAATGTATAAGCCCGATATGTAAATTAATTGTGTGGGTTTAGATTAATgtgataataaaacaaacaaatagttcctattaacactttttaatcaattttcaCTACTtgttattagcatgcataatactattgtgtatatatataatatatatataaaatatgcctGTGCGTTTATAAAACAATACTTTGGTTTCTTGTAAAGTTGACATTATTTGCAAttcaagtttgtttgttttttaatatactggTTTGCAGTGTTTGTATGAGAGTTTGCAGGGTCACAGTCTTAATGGCATTGCTAGAGAATTAAAAAGTGTCTACTGGAGGAAATCAAATGTCAATgtgacataaaatatgtaaaaagatGATTCTTTAATGCTGAAGTTCCAATTGTGGAACAGTCTTTACTTTTGTTGAATCACAGAGATGTCATTGGGGTCTTTGTCAGATTGAGGGATACGCTTTGGGACACATGGACATGTGGATGAATGGAAAGAATAGTGGGTGGGAAAAACCTGCTTCCCTGGTTTACAAATCAAGCTACAGTTTCCATGTGAAACACAATCTATACATATTTGATTCAGCATATTGTATGAGCTGATGTTTGTGGTGAATGTGAAAAAGGATAGAGGattgttctgttctttttacCGAAGCAGACCAGAGGTTCCCATGGGAATTTATTCCATAGGAGAAAATCTGAACTTTCAGGGATGTGAAAACAACACTCTCTGCccatcatcacacacactcatctagAGAGAAACTTGACTCTCACTGATTTCTCCTTGACTGTGGATTCAGTTATTCATCACTTAATGGATGCTTTTTGTCCAAAAAAGTGTCTTGCTCGAGGTCTCGAGGAGAAATTCTCCATTTCACCGCTCTCACTTTCCATGGTTTAAAATAAGAACCCACCCAAATTTAACTGTGCCACCATTCAGTTAAGAAGTAGAAGTTCATCATTCTGCAGAGAGAACAGACAGGATGTATTATtcataacataataatatatatttttcataggCCTAATGACAGTTTGAATTACCCTATTGAATTTACAGTCTACTTTAGAACTGTAGGCACATATTGTCTTTAGAATCCTTATAGGGGTTGAATATTTctgcatgaaaaacaaactgGAGTGGGGCGATGACATTAGGCCATTGATACTTTGTGAGTCAAATTAGAGCAAAAGATGATctgttctttaaaaagtaatttccaTTTGGTTTTTACTCTTACATGACCGCATTTTGTGACCTCTCTCCTTCTGACTAGTAATAGTAAATGAAAAGCTcttgaaaatgaatgcactTGCCACCAATGGGTTGAGAAAGCTTTTAGCATAACCACTCTTCAGTAAAACTTCTGTAAAATTCCAGGATGTAGTAGAGATGACAAGTAGAATTTAGTGAAAACTCTTTTCCTTTGAATAATGGTTCAGCTGTAGTTCACTGTCACGTATCCACATCTTATGAATGATGTAACTGTACATGTGTAGACTTGACAATTGATATCTGTATCTGTGAAGGTAATAGAGAGATGGTGGAAAAGAATTCAGCCGTGACAAAAGcatggaataaataaaataagatgtgACCTTTCAGTCATCCTTACCAAACACTGTATCCTTTCAGCTtcctaaaaaacattttgactgaTTAATCTTTTGAAAAGCAGTTGGCTTCTATGTGAGTTTTTAGACAGTACTTTAAATTTAGTCCGttttttattgtcatatttatttttaccttgaCTAAAATGCTATAAACCCTTTCCAAATCACACAACTGATTTGTTTCCTCTGTGATCAACTACATAGATGACATGGCAGTAATGTGAGACAGAAATATATGTAAAGcaaaaaagtgaaaagagaGAACAACACAGTTAGGGTGGAGCGGTTTAGGGTGGAGGCTATAGAGAATTGTCAGAATgtttcactttcaaaaaaacTGCCACAACTGTCACAATTAATAAAGTTCAAGTCTTAATCTCCTTGTGTCAATATCATAACTGAATCTTAAATCTGTAATCATTTGCAAGTGTAATGTTCTGCAGCTTGTTAGATGCATCCTGCAGCTTCTAACAAGCTCTCCCTAAAACCTATAAACCTACTCAAGAGCCCTTTAAACAAGAGACCACCCATCTCTTAAGAGACTATATCTCTCATTCACCTGTACAGAGTTGTTAAGTTTGCACTACAAAAAACCTGGAAGGCTTTTATAAGTCATGGTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103357 False 559 lncRNA 0.40 3 13230867 13232202
XR_006251825.1 True 3280 lncRNA 0.36 3 13228154 13232210

Neighbor

gene id symbol gene type direction distance location
lrrfip1a lrrfip1a,LOC107670703,LOC107571722,LOC107725241,LOC107601083,LOC107739944,LOC107695587 coding downstream 17088 13179504 ~ 13211066 (-)
maip1 NA coding downstream 51620 13173919 ~ 13176534 (-)
pgap1 pgap1,LOC107571728,LOC107601081,LOC107670709 coding downstream 54370 13160284 ~ 13173784 (-)
hecw2a hecw2a,LOC107728295,LOC107670708,LOC107675363,LOC107601080,LOC108425978 coding downstream 69852 13139656 ~ 13158302 (-)
stk17b stk17b,LOC107670710,LOC107728292,LOC107555841,LOC107718375,LOC107675356,LOC107601079 coding downstream 90182 13130049 ~ 13137972 (-)
prlh NA coding upstream 3197 13235407 ~ 13236184 (-)
mlphb mlphb,LOC107739953,LOC107670700,LOC107695586,LOC107555071,LOC107571729 coding upstream 4471 13236681 ~ 13251659 (-)
cops8 cops8,trim63b,LOC107723689,LOC107685920,LOC107725246,LOC107695583,LOC106581673 coding upstream 122541 13354751 ~ 13362915 (-)
ints6 ints6,LOC107567782,LOC107685346,LOC107723679,LOC107695579,LOC107725253 coding upstream 168042 13400252 ~ 13410399 (-)
dhrs12 dhrs12,LOC107685263,LOC107723690,LOC107725249,LOC107695571,LOC107555069,LOC107567773 coding upstream 187805 13420015 ~ 13424845 (-)
G69762 NA non-coding downstream 190701 13035956 ~ 13037453 (-)
LOC122351847 NA non-coding downstream 439020 12787115 ~ 12789134 (-)
G69738 NA non-coding downstream 454302 12773441 ~ 12773852 (-)
G69733 NA non-coding downstream 496411 12731041 ~ 12731743 (-)
G69704 NA non-coding downstream 581152 12645836 ~ 12647002 (-)
G69888 col6a3,LOC107670696,LOC107567775,LOC107739950 non-coding upstream 70193 13302403 ~ 13327413 (-)
G69896 col6a3,LOC107567775,LOC107685998 non-coding upstream 78663 13310873 ~ 13325669 (-)
G69953 NA non-coding upstream 179602 13411812 ~ 13412439 (-)
G70027 NA non-coding upstream 442508 13674718 ~ 13675514 (-)
G70033 NA non-coding upstream 447170 13679380 ~ 13682139 (-)
G69757 NA other downstream 242176 12985124 ~ 12985978 (-)
LOC122352189 NA other downstream 489983 12738044 ~ 12738171 (-)
LOC122351186 adcy5,LOC107555914,LOC107660638,LOC107596066,LOC107661140,LOC106586396,LOC107745452,LOC107668560,LOC107695824,LOC107716189,LOC107568450,LOC108433131 other downstream 507464 12707976 ~ 12720690 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other downstream 645729 12518284 ~ 12582425 (-)
G69650 NA other downstream 804708 12422429 ~ 12423446 (-)
gypc gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565 other upstream 240925 13473135 ~ 13495667 (-)
tmem163a tmem163a,LOC107658221,LOC107725256,LOC107684456,LOC107555363,LOC106586306,LOC106582396 other upstream 410093 13642303 ~ 13673807 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other upstream 575612 13807822 ~ 13813327 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other upstream 647360 13879570 ~ 13912943 (-)
G70294 NA other upstream 706049 13938259 ~ 13939868 (-)

Expression


Co-expression Network