G69896 (col6a3,LOC107567775,LOC107685998)


Basic Information

Item Value
gene id G69896
gene name col6a3,LOC107567775,LOC107685998
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13310873 ~ 13325669 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU103400
GTGAATGaacaaacactttcaaatatAACAAGTGCCTAGAGTTCAAGCCCTTGGCCTTTTAGCCTAATTTCCCACGGTTCTGCTCACATGCAACGCTAACGTGAACTGTTCAGGGTCTACTGCACGCTTTGCAAAGAAGGGCTCAGTGTGCTGTTTTTCTAGAGGAGCGCGAGAGTCTGTCTTACCCGGCACAGTAGTTGTCATGGGCTTGACTTGACCGAGCACGTTGTTGAGGGAGCTGGTAAACTGCTGTTGGACACTGGGAAGGTCAGAGAATTCATTGACGGACTGTGCATAGGAAGGATCATTGACAATTCTCTGCACCTCTCTGCTGGAATTTCTGGTGCCGATGCCAAAAATCAAGATCCCGCTCTGTTTCAAGGCAGAGGCAGGTGTATCTATGTTATCGCTTGACCGTCCTCCACTGAGGAGGACGAGAACCTGAGGGACGCCCGCTTGCTTTCTACTCCCCGCAGAGGCGGTGAAGACATTGTCCCTCACGTACTGGAGAGCTGCTCCAGTGTTGAGGGGTCTCCCTCCTCTATGCCTCAGACCTCGGACAGAGCTCAAGATCTCCCCTTTTGTTGTGTAGGCATTCAGATAGAAATTGACCTCTGCGTCTCTACTGTACTGCACCACGGCAACGCGGTCTCTGTTTGCATCTATGTTGAATTGCTCCACTAATCTTTGCACAAAGTCACGCATCGCTGGGAAAGTATTTCTAGTGCCATCCGAACCGTCCAGCAGGAACACTACGTCCTTTCTGGGTATGGCGTCATCAGCTAGGGAAAGAAAACAGCGTCATTAACAACCAGGACATGTCAAAACATCTTTAGAACGGCACGTTAGTTC

Function

symbol description
col6a3 Predicted to enable serine-type endopeptidase inhibitor activity. Acts upstream of or within axon extension and motor neuron axon guidance. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in head. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy; dystonia 27; and muscular dystrophy. Orthologous to human COL6A3 (collagen type VI alpha 3 chain).

NR:

description
PREDICTED: collagen alpha-3(VI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103400 True 852 lncRNA 0.50 2 13310873 13325669

Neighbor

gene id symbol gene type direction distance location
mlphb mlphb,LOC107739953,LOC107670700,LOC107695586,LOC107555071,LOC107571729 coding downstream 59214 13236681 ~ 13251659 (-)
prlh NA coding downstream 74689 13235407 ~ 13236184 (-)
lrrfip1a lrrfip1a,LOC107670703,LOC107571722,LOC107725241,LOC107601083,LOC107739944,LOC107695587 coding downstream 99807 13179504 ~ 13211066 (-)
maip1 NA coding downstream 134339 13173919 ~ 13176534 (-)
pgap1 pgap1,LOC107571728,LOC107601081,LOC107670709 coding downstream 137089 13160284 ~ 13173784 (-)
cops8 cops8,trim63b,LOC107723689,LOC107685920,LOC107725246,LOC107695583,LOC106581673 coding upstream 29082 13354751 ~ 13362915 (-)
ints6 ints6,LOC107567782,LOC107685346,LOC107723679,LOC107695579,LOC107725253 coding upstream 74583 13400252 ~ 13410399 (-)
dhrs12 dhrs12,LOC107685263,LOC107723690,LOC107725249,LOC107695571,LOC107555069,LOC107567773 coding upstream 94346 13420015 ~ 13424845 (-)
parp14rs1 si:ch211-219a4.3,LOC107725230,LOC107695575,LOC107555066,LOC107555021,LOC107579587,LOC107754848 coding upstream 108296 13433965 ~ 13444172 (-)
faima faima,faim,LOC107723686,LOC107686598,LOC107725233,LOC107695570,LOC108266416 coding upstream 124201 13449870 ~ 13454850 (-)
LOC122351987 NA non-coding downstream 78663 13228154 ~ 13232210 (-)
G69762 NA non-coding downstream 273420 13035956 ~ 13037453 (-)
LOC122351847 NA non-coding downstream 521739 12787115 ~ 12789134 (-)
G69738 NA non-coding downstream 537021 12773441 ~ 12773852 (-)
G69733 NA non-coding downstream 579130 12731041 ~ 12731743 (-)
G69953 NA non-coding upstream 86143 13411812 ~ 13412439 (-)
G70027 NA non-coding upstream 349049 13674718 ~ 13675514 (-)
G70033 NA non-coding upstream 353711 13679380 ~ 13682139 (-)
G70263 LOC107723691,LOC107555352,LOC107725250,LOC107555050 non-coding upstream 490042 13815711 ~ 13816743 (-)
G70271 NA non-coding upstream 509577 13835246 ~ 13835699 (-)
G69757 NA other downstream 324895 12985124 ~ 12985978 (-)
LOC122352189 NA other downstream 572702 12738044 ~ 12738171 (-)
LOC122351186 adcy5,LOC107555914,LOC107660638,LOC107596066,LOC107661140,LOC106586396,LOC107745452,LOC107668560,LOC107695824,LOC107716189,LOC107568450,LOC108433131 other downstream 590183 12707976 ~ 12720690 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other downstream 728448 12518284 ~ 12582425 (-)
G69650 NA other downstream 887427 12422429 ~ 12423446 (-)
gypc gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565 other upstream 147466 13473135 ~ 13495667 (-)
tmem163a tmem163a,LOC107658221,LOC107725256,LOC107684456,LOC107555363,LOC106586306,LOC106582396 other upstream 316634 13642303 ~ 13673807 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other upstream 482153 13807822 ~ 13813327 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other upstream 553901 13879570 ~ 13912943 (-)
G70294 NA other upstream 612590 13938259 ~ 13939868 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G55819 NA non-coding CI01000009 null 8244491 ~ 8246096 (-)