gypc (gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565)


Basic Information

Item Value
gene id gypc
gene name gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13473135 ~ 13495667 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU103524
GGGGAAGTTCACGTGCCATACATTTAAACTTAACGGATCTAAAAACAGAACTCTGATATGATTCATGATAATATTTCAACCCTTTTAGAAAGCGAAAGAACAACTGAGCAGAGGAAGTATTTGTGTTCCTAGAAAAAAGGACAGGAGGACAGCTTGCAGGCTGAGGGAGAACTTGTTGCAGAACTGTTCAAGAAAAGTTGACATCTCATCATCCCTGAGAACACTCTCCCACAGCTGTCCCCCTCAATCTCACTGCCAAATATTCCTTCACATGTCTGTAATGGCCAACTCCACAGAACGTAGCGTAACCCCTACTGAAAGCATATCTGACACATCACCCATATCTATTCAGGGACCATACTTTGAAGCCATAGTGGGCGTTGTCATTGCTGTGGTGGTTCTGGCCCTGCTCCTCCTCCTGGCCATCATTCTGCGATACATGTACAAGCACAAGGGCACATATCATACCAATGAGGCCAAGGGCACAGAGTTCGCGGAGACAGCAGACGCTGCTCTGCGTGGAGACCCTGCCCTCCAGGACGCCATGGATGAGAGCAAGAAAGAGTATTTCATATGAGACACAATAGCTGGCCCTTTATACACATCACATAATAAACTCCTACAGGCCCACATGATGCCTCAATCCTGTTTGCTGGAACTGACTGAGCTCCccgcaaacacaaacaaacaccaaGTGTATTGTAAAATTCCTCTATATTTCAATATCTAAGAgcgtttatatttatttgtttcagaaAAAGAGTTAATATTGAGTACAGATGAAAGAATATGCCACACTCCTTGTAAAGCTGAGCGTCTAAAAGAGCATCAGCTCAGGAGAATGAGATCAGATGTGTTCAGATGAAGAGAAGGAAAGTCTTTGATCTCATTAGAAAGAATGTGAACGATTGGCGTAATGTGAAAACATTGAAATCAACACTGTTAAAAGACAAGAATGTGAAATTAATTGGTTTTGTATATGACATATGGGACACCGGACCACAAAATCAATCATAAGGGTCAATTTTGAACTTTGAAACTGAGATTTAgggtttgttaggacaggacaatatttAGCCGAGaaacagctatttgaaaatctggaatctgagggtgcaaaaaaaatcgcCTTCGTAGTTGAAGTCAAATGAAgtcttgatatatttacagggcaaaatgtacaaaatatggAACATTATCTTGATATCTTAATTATTTTTggtattaaagaaaaaacaataatttgttACCAtccaatgtatttttggctattcaGAGATACCCTTgatgactgtttttgtggtccagtaAGAATCAGGTATCAGATTCATGAATATCTCAAGAAAGAAGTTAGTTTTTAAGAAGTTTGTCagtttttaagacatttttaagaagtttaagttttttcttattttttaaaagatgaaaatagCTTTGTTGTTTAATTGTATGGCAGTTCTTGCCAAAGACTATCCGGTCAACTCAATATTAAACACCTCcaaaagcatcttttttttgcagatttatctAATGATCATAATAAACatgcactgttttatttttgactggCTTTACAGGAGTTCAGTCCtcaatgtcacattttaatgctccatgtttttaaaatagttactTTCTAGGAGCCTGTCTCAAGATACATATCAGAAATATATCTTTTCCATATTAATGTGtacatacactttttttaaaaaaaaaaaaaggctaaaaagtCATCACTGGTATggtaactttttaaaacaaaccttGTACCTAAAGGGTGCATACATTTATGCCTTAAAGTTACATATCAGTACCTAAAAGGCTATTATTAGTACCTTTTTGAGGCTTTTGCacattgttctgtttttacTGGGTGATTCTAATtccaactatttttttttgcttgtggggaaataaaagttagtttttttgtaagaaTGTCTGAGATTTAATTAGACAGATCTAATGAAATGTTGCTTTCTAATTAGAAGCAGTATTAGAGTTAGTCAGCGGAGtaagtaaatgagaaaagtatCTTCTTTAGATGCCTTAACTTTTTAATTCAATCTATAGTAATGCTttgacaacaaataaaacaaatta
>TU103525
GGGGAAGTTCACGTGCCATACATTTAAACTTAACGGATCTAAAAACAGAACTCTGATATGATTCATGATAATATTTCAACCCTTTTAGAAAGCGAAAGAACAACTGAGCAGAGGAAGTATTTGTGTTCCTAGAAAAAAGGACAGGAGGACAGCTTGCAGGCTGAGGGAGAACTTGTTGCAGAACTGTTCAAGAAAAGTTGAGGGACCATACTTTGAAGCCATAGTGGGCGTTGTCATTGCTGTGGTGGTTCTGGCCCTGCTCCTCCTCCTGGCCATCATTCTGCGATACATGTACAAGCACAAGGGCACATATCATACCAATGAGGCCAAGGGCACAGAGTTCGCGGAGACAGCAGACGCTGCTCTGCGTGGAGACCCTGCCCTCCAGGACGCCATGGATGAGAGCAAGAAAGAGTATTTCATATGAGACACAATAGCTGGCCCTTTATACACATCACATAATAAACTCCTACAGGCCCACATGATGCCTCAATCCTGTTTGCTGGAACTGACTGAGCTCCccgcaaacacaaacaaacaccaaGTGTATTGTAAAATTCCTCTATATTTCAATATCTAAGAgcgtttatatttatttgtttcagaaAAAGAGTTAATATTGAGTACAGATGAAAGAATATGCCACACTCCTTGTAAAGCTGAGCGTCTAAAAGAGCATCAGCTCAGGAGAATGAGATCAGATGTGTTCAGATGAAGAGAAGGAAAGTCTTTGATCTCATTAGAAAGAATGTGAACGATTGGCGTAATGTGAAAACATTGAAATCAACACTGTTAAAAGACAAGAATGTGAAATTAATTGGTTTTGTATATGACATATGGGACACCGGACCACAAAATCAATCATAAGGGTCAATTTTGAACTTTGAAACTGAGATTTAgggtttgttaggacaggacaatatttAGCCGAGaaacagctatttgaaaatctggaatctgagggtgcaaaaaaaatcgcCTTCGTAGTTGAAGTCAAATGAAgtcttgatatatttacagggcaaaatgtacaaaatatggAACATTATCTTGATATCTTAATTATTTTTggtattaaagaaaaaacaataatttgttACCAtccaatgtatttttggctattcaGAGATACCCTTgatgactgtttttgtggtccagtaAGAATCAGGTATCAGATTCATGAATATCTCAAGAAAGAAGTTAGTTTTTAAGAAGTTTGTCagtttttaagacatttttaagaagtttaagttttttcttattttttaaaagatgaaaatagCTTTGTTGTTTAATTGTATGGCAGTTCTTGCCAAAGACTATCCGGTCAACTCAATATTAAACACCTCcaaaagcatcttttttttgcagatttatctAATGATCATAATAAACatgcactgttttatttttgactggCTTTACAGGAGTTCAGTCCtcaatgtcacattttaatgctccatgtttttaaaatagttactTTCTAGGAGCCTGTCTCAAGATACATATCAGAAATATATCTTTTCCATATTAATGTGtacatacactttttttaaaaaaaaaaaaaggctaaaaagtCATCACTGGTATggtaactttttaaaacaaaccttGTACCTAAAGGGTGCATACATTTATGCCTTAAAGTTACATATCAGTACCTAAAAGGCTATTATTAGTACCTTTTTGAGGCTTTTGCacattgttctgtttttacTGGGTGATTCTAATtccaactatttttttttgcttgtggggaaataaaagttagtttttttgtaagaaTGTCTGAGATTTAATTAGACAGATCTAATGAAATGTTGCTTTCTAATTAGAAGCAGTATTAGAGTTAGTCAGCGGAGtaagtaaatgagaaaagtatCTTCTTTAGATGCCTTAACTTTTTAATTCAATCTATAGTAATGCTttgacaacaaataaaacaaatta
>TU103526
GGGGAAGTTCACGTGCCATACATTTAAACTTAACGGATCTAAAAACAGAACTCTGATATGATTCATGATAATATTTCAACCCTTTTAGAAAGCGAAAGAACAACTGAGCAGAGGAAGTATTTGTGTTCCTAGAAAAAAGGACAGGAGGACAGCTTGCAGGCTGAGGGAGAACTTGTTGCAGAACTGTTCAAGAAAAGTTGACATCTCATCATCCCTGAGAACACTCTCCCACAGCTGTCCCCCTCAATCTCACTGCCAAATATTCCTTCACATGTCTGTAATGGCCAACTCCACAGAACGTAGCGTAACCCCTACTGAAAGCATATCTGACACATCACCCATATCTATTCTTGTCATTGCTGTGGTGGTTCTGGCCCTGCTCCTCCTCCTGGCCATCATTCTGCGATACATGTACAAGCACAAGGGCACATATCATACCAATGAGGCCAAGGGCACAGAGTTCGCGGAGACAGCAGACGCTGCTCTGCGTGGAGACCCTGCCCTCCAGGACGCCATGGATGAGAGCAAGAAAGAGTATTTCATATGAGACACAATAGCTGGCCCTTTATACACATCACATAATAAACTCCTACAGGCCCACATGATGCCTCAATCCTGTTTGCTGGAACTGACTGAGCTCCccgcaaacacaaacaaacaccaaGTGTATTGTAAAATTCCTCTATATTTCAATATCTAAGAgcgtttatatttatttgtttcagaaAAAGAGTTAATATTGAGTACAGATGAAAGAATATGCCACACTCCTTGTAAAGCTGAGCGTCTAAAAGAGCATCAGCTCAGGAGAATGAGATCAGATGTGTTCAGATGAAGAGAAGGAAAGTCTTTGATCTCATTAGAAAGAATGTGAACGATTGGCGTAATGTGAAAACATTGAAATCAACACTGTTAAAAGACAAGAATGTGAAATTAATTGGTTTTGTATATGACATATGGGACACCGGACCACAAAATCAATCATAAGGGTCAATTTTGAACTTTGAAACTGAGATTTAgggtttgttaggacaggacaatatttAGCCGAGaaacagctatttgaaaatctggaatctgagggtgcaaaaaaaatcgcCTTCGTAGTTGAAGTCAAATGAAgtcttgatatatttacagggcaaaatgtacaaaatatggAACATTATCTTGATATCTTAATTATTTTTggtattaaagaaaaaacaataatttgttACCAtccaatgtatttttggctattcaGAGATACCCTTgatgactgtttttgtggtccagtaAGAATCAGGTATCAGATTCATGAATATCTCAAGAAAGAAGTTAGTTTTTAAGAAGTTTGTCagtttttaagacatttttaagaagtttaagttttttcttattttttaaaagatgaaaatagCTTTGTTGTTTAATTGTATGGCAGTTCTTGCCAAAGACTATCCGGTCAACTCAATATTAAACACCTCcaaaagcatcttttttttgcagatttatctAATGATCATAATAAACatgcactgttttatttttgactggCTTTACAGGAGTTCAGTCCtcaatgtcacattttaatgctccatgtttttaaaatagttactTTCTAGGAGCCTGTCTCAAGATACATATCAGAAATATATCTTTTCCATATTAATGTGtacatacactttttttaaaaaaaaaaaaaggctaaaaagtCATCACTGGTATggtaactttttaaaacaaaccttGTACCTAAAGGGTGCATACATTTATGCCTTAAAGTTACATATCAGTACCTAAAAGGCTATTATTAGTACCTTTTTGAGGCTTTTGCacattgttctgtttttacTGGGTGATTCTAATtccaactatttttttttgcttgtggggaaataaaagttagtttttttgtaagaaTGTCTGAGATTTAATTAGACAGATCTAATGAAATGTTGCTTTCTAATTAGAAGCAGTATTAGAGTTAGTCAGCGGAGtaagtaaatgagaaaagtatCTTCTTTAGATGCCTTAACTTTTTAATTCAATCTATAGTAATGCTttgacaacaaataaaacaaatta
>XM_043248890.1
TTAAGGGTGGAGTGGGCTGAAAGGGGAAGTTCACGTGCCATACATTTAAACTTAACGGATCTAAAAACAGAACTCTGATATGATTCATGATAATATTTCAACCCTTTTAGAAAGCGAAAGAACAACTGAGCAGAGGAAGTATTTGTGTTCCTAGAAAAAAGGACAGGAGGACAGCTTGCAGGCTGAGGGAGAACTTGTTGCAGAACTGTTCAAGAAAAGTTGACATCTCATCATCCCTGAGAACACTCTCCCACAGCTGTCCCCCTCAATCTCACTGCCAAATATTCCTTCACATGTCTGTAATGGCCAACTCCACAGAACGTAGCGTAACCCCTACTGAAAGCATATCTGACACATCACCCATATCTATTCAGGGACCATACTTTGAAGCCATAGTGGGCGTTGTCATTGCTGTGGTGGTTCTGGCCCTGCTCCTCCTCCTGGCCATCATTCTGCGATACATGTACAAGCACAAGGGCACATATCATACCAATGAGGCCAAGGGCACAGAGTTCGCGGAGACAGCAGACGCTGCTCTGCGTGGAGACCCTGCCCTCCAGGACGCCATGGATGAGAGCAAGAAAGAGTATTTCATATGAGACACAATAGCTGGCCCTTTATACACATCACATAATAAACTCCTACAGGCCCACATGATGCCTCAATCCTGTTTGCTGGAACTGACTGAGCTCCccgcaaacacaaacaaacaccaaGTGTATTGTAAAATTCCTCTATATTTCAATATCTAAGAgcgtttatatttatttgtttcagaaAAAGAGTTAATATTGAGTACAGATGAAAGAATATGCCACACTCCTTGTAAAGCTGAGCGTCTAAAAGAGCATCAGCTCAGGAGAATGAGATCAGATGTGTTCAGATGAAGAGAAGGAAAGTCTTTGATCTCATTAGAAAGAATGTGAACGATTGGCGTAATGTGAAAACATTGAAATCAACACTGTTAAAAGACAAGAATGTGAAATTAATTGGTTTTGTATATGACATATGGGACACCGGACCACAAAATCAATCATAAGGGTCAATTTTGAACTTTGAAACTGAGATTTAgggtttgttaggacaggacaatatttAGCCGAGaaacagctatttgaaaatctggaatctgagggtgcaaaaaaaatcgcCTTCGTAGTTGAAGTCAAATGAAgtcttgatatatttacagggcaaaatgtacaaaatatggAACATTATCTTGATATCTTAATTATTTTTggtattaaagaaaaaacaataatttgttACCAtccaatgtatttttggctattcaGAGATACCCTTgatgactgtttttgtggtccagtaAGAATCAGGTATCAGATTCATGAATATCTCAAGAAAGAAGTTAGTTTTTAAGAAGTTTGTCagtttttaagacatttttaagaagtttaagttttttcttattttttaaaagatgaaaatagCTTTGTTGTTTAATTGTATGGCAGTTCTTGCCAAAGACTATCCGGTCAACTCAATATTAAACACCTCcaaaagcatcttttttttgcagatttatctAATGATCATAATAAACatgcactgttttatttttgactggCTTTACAGGAGTTCAGTCCtcaatgtcacattttaatgctccatgtttttaaaatagttactTTCTAGGAGCCTGTCTCAAGATACATATCAGAAATATATCTTTTCCATATTAATGTGtacatacactttttttaaaaaaaaaaaaaggctaaaaagtCATCACTGGTATggtaactttttaaaacaaaccttGTACCTAAAGGGTGCATACATTTATGCCTTAAAGTTACATATCAGTACCTAAAAGGCTATTATTAGTACCTTTTTGAGGCTTTTGCacattgttctgtttttacTGGGTGATTCTAATtccaactatttttttttgcttgtggggaaataaaagttagtttttttgtaagaaTGTCTGAGATTTAATTAGACAGATCTAATGAAATGTTGCTTTCTAATTAGAAGCAGTATTAGAGTTAGTCAGCGGAGtaagtaaatgagaaaagtatCTTCTTTAGATGCCTTAACTTTTTAATTCAATCTATAGTAATGCTttgacaacaaataaaacaaattatatca

Function

symbol description
gypc Is extrinsic component of plasma membrane. Is expressed in nucleate erythrocyte. Human ortholog(s) of this gene implicated in malaria. Orthologous to human GYPC (glycophorin C (Gerbich blood group)).

NR:

description
PREDICTED: glycophorin-C-like

GO:

id name namespace
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K06576 GYPC, CD236; glycophorin C

RNA

RNA id representative length rna type GC content exon number start site end site
TU103524 False 2100 TUCP 0.36 4 13473140 13495645
TU103525 False 1950 lncRNA 0.35 3 13473140 13495645
TU103526 False 2070 TUCP 0.36 3 13473140 13495645
XM_043248890.1 True 2127 mRNA 0.36 4 13473135 13495667

Neighbor

gene id symbol gene type direction distance location
faima faima,faim,LOC107723686,LOC107686598,LOC107725233,LOC107695570,LOC108266416 coding downstream 18285 13449870 ~ 13454850 (-)
parp14rs1 si:ch211-219a4.3,LOC107725230,LOC107695575,LOC107555066,LOC107555021,LOC107579587,LOC107754848 coding downstream 28963 13433965 ~ 13444172 (-)
dhrs12 dhrs12,LOC107685263,LOC107723690,LOC107725249,LOC107695571,LOC107555069,LOC107567773 coding downstream 48290 13420015 ~ 13424845 (-)
ints6 ints6,LOC107567782,LOC107685346,LOC107723679,LOC107695579,LOC107725253 coding downstream 62736 13400252 ~ 13410399 (-)
cops8 cops8,trim63b,LOC107723689,LOC107685920,LOC107725246,LOC107695583,LOC106581673 coding downstream 110220 13354751 ~ 13362915 (-)
LOC122351673 tas2r60,LOC107686069,LOC107567768,LOC107658204,LOC107555019,LOC107723647 coding upstream 17935 13513602 ~ 13515484 (-)
cntnap5a cntnap5a,LOC107723682,LOC107567780,LOC107684760,LOC107658203,LOC107725209,LOC108425961 coding upstream 20021 13515688 ~ 13574954 (-)
LOC122351432 LOC107723646,LOC107684057,LOC107555330,LOC107577428 coding upstream 189318 13684985 ~ 13694187 (-)
mmadhcb LOC107555358,LOC107723693,LOC107725215,LOC107555052,LOC107658219 coding upstream 264657 13760324 ~ 13765326 (-)
si:dkey-91i10.3 si:dkey-91i10.3,LOC107658292,LOC107723676,LOC107725254,LOC107555356,LOC107683415,LOC107555015 coding upstream 281959 13777626 ~ 13783452 (-)
G69953 NA non-coding downstream 60696 13411812 ~ 13412439 (-)
G69888 col6a3,LOC107670696,LOC107567775,LOC107739950 non-coding downstream 145722 13302403 ~ 13327413 (-)
G69896 col6a3,LOC107567775,LOC107685998 non-coding downstream 147466 13310873 ~ 13325669 (-)
LOC122351987 NA non-coding downstream 240925 13228154 ~ 13232210 (-)
G69762 NA non-coding downstream 435682 13035956 ~ 13037453 (-)
G70027 NA non-coding upstream 179051 13674718 ~ 13675514 (-)
G70033 NA non-coding upstream 183713 13679380 ~ 13682139 (-)
G70263 LOC107723691,LOC107555352,LOC107725250,LOC107555050 non-coding upstream 320044 13815711 ~ 13816743 (-)
G70271 NA non-coding upstream 339579 13835246 ~ 13835699 (-)
G70272 NA non-coding upstream 341643 13837310 ~ 13837600 (-)
G69757 NA other downstream 487157 12985124 ~ 12985978 (-)
LOC122352189 NA other downstream 734964 12738044 ~ 12738171 (-)
LOC122351186 adcy5,LOC107555914,LOC107660638,LOC107596066,LOC107661140,LOC106586396,LOC107745452,LOC107668560,LOC107695824,LOC107716189,LOC107568450,LOC108433131 other downstream 752445 12707976 ~ 12720690 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other downstream 890710 12518284 ~ 12582425 (-)
G69650 NA other downstream 1049689 12422429 ~ 12423446 (-)
tmem163a tmem163a,LOC107658221,LOC107725256,LOC107684456,LOC107555363,LOC106586306,LOC106582396 other upstream 146636 13642303 ~ 13673807 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other upstream 312155 13807822 ~ 13813327 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other upstream 383903 13879570 ~ 13912943 (-)
G70294 NA other upstream 442592 13938259 ~ 13939868 (-)
G70317 NA other upstream 700812 14196479 ~ 14253776 (-)

Expression


Co-expression Network