G70290 (LOC107658288)


Basic Information

Item Value
gene id G70290
gene name LOC107658288
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13858996 ~ 13859401 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU103987
CTCACTATAGTTgactttgttttgctttgcaaGAACCACATCCATTGAGTCTGGCATGATGTGaatctttgttttatcattattccAGGCTTCAACATATTTTGctTGTTCATAATATCATTATTGGCTTTGGCCAAGACCAGTGGCATGTCTTCAGCTGTACAAGTGAACTTAAAGTTGCTTGGGTGCTGACGATACTTCTTTTCACTTAGGATTTCTCCAGCCTTTTTCACTTTCTCGACATCAAGCGAACCAATGGGGACCCATCCGAGACCTTGAAGCCACTTCAGATCTGCCTTATATACCGC

Function

NR:

description
PREDICTED: nebulin-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU103987 True 308 lncRNA 0.42 2 13858996 13859401

Neighbor

gene id symbol gene type direction distance location
tsn tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218,LOC107725218 coding downstream 35211 13821399 ~ 13823785 (-)
eaf2 eaf2,LOC107683512,LOC107725251,LOC107723678,LOC107658291,LOC108261038 coding downstream 71868 13783785 ~ 13787128 (-)
si:dkey-91i10.3 si:dkey-91i10.3,LOC107658292,LOC107723676,LOC107725254,LOC107555356,LOC107683415,LOC107555015 coding downstream 75544 13777626 ~ 13783452 (-)
mmadhcb LOC107555358,LOC107723693,LOC107725215,LOC107555052,LOC107658219 coding downstream 93670 13760324 ~ 13765326 (-)
LOC122351432 LOC107723646,LOC107684057,LOC107555330,LOC107577428 coding downstream 164809 13684985 ~ 13694187 (-)
tnfaip6 tnfaip6,LOC107723653,LOC107658287,LOC107677671,LOC107555349,LOC107725226 coding upstream 54473 13913874 ~ 13921597 (-)
itgb5 itgb5,LOC107723672,LOC107725247,LOC107658201 coding upstream 66512 13925913 ~ 13961097 (-)
rbm44 LOC107674378,LOC107723642,LOC107555328,LOC107736749,LOC107735772 coding upstream 102356 13961757 ~ 13972062 (-)
etv5a etv5,etv5a,LOC107723673,LOC107729410,LOC107658285,LOC107673585 coding upstream 114646 13974047 ~ 13985162 (-)
LOC122351370 LOC107723674,LOC107672245,LOC107555347,LOC567728,LOC107555039,LOC107658284,LOC107729411 coding upstream 125614 13985015 ~ 14086771 (-)
G70272 NA non-coding downstream 21396 13837310 ~ 13837600 (-)
G70271 NA non-coding downstream 23297 13835246 ~ 13835699 (-)
G70263 LOC107723691,LOC107555352,LOC107725250,LOC107555050 non-coding downstream 42253 13815711 ~ 13816743 (-)
G70033 NA non-coding downstream 176857 13679380 ~ 13682139 (-)
G70027 NA non-coding downstream 183482 13674718 ~ 13675514 (-)
G70288 neb,LOC107658288,LOC107723644,LOC107678501 non-coding upstream 382 13859783 ~ 13866148 (-)
G70289 NA non-coding upstream 2121 13861522 ~ 13861935 (-)
G70303 NA non-coding upstream 13305 13872706 ~ 13873011 (-)
G70305 LOC107725229,LOC107658288 non-coding upstream 14117 13873518 ~ 13876466 (-)
G70306 NA non-coding upstream 18723 13878124 ~ 13878412 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 45669 13807822 ~ 13813327 (-)
tmem163a tmem163a,LOC107658221,LOC107725256,LOC107684456,LOC107555363,LOC106586306,LOC106582396 other downstream 185189 13642303 ~ 13673807 (-)
gypc gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565 other downstream 363329 13473135 ~ 13495667 (-)
G69757 NA other downstream 873018 12985124 ~ 12985978 (-)
LOC122352189 NA other downstream 1120825 12738044 ~ 12738171 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other upstream 20169 13879570 ~ 13912943 (-)
G70294 NA other upstream 78858 13938259 ~ 13939868 (-)
G70317 NA other upstream 337078 14196479 ~ 14253776 (-)
LOC122351495 NA other upstream 500245 14359646 ~ 14372674 (-)
G70549 NA other upstream 1443702 15303103 ~ 15305975 (-)

Expression


Co-expression Network