G70438 (LOC107600383,LOC107655530,LOC107720111)


Basic Information

Item Value
gene id G70438
gene name LOC107600383,LOC107655530,LOC107720111
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14916800 ~ 14918840 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU104213
GCAGACAGCACCGTGGATTTCTTCTTTGTCCCACTGAACTTTAGTGCGACAGGGACTGCTCAACTTCCTGTCCCAAAGGGCCTGCACCTCTTTTGAGCACTGACAGACTTCCTGGTAATCCAGCTTCATTTTACGAATGTGCAATTCATCACGGCTGGCTGCCTCCAGGCGCTGGTTCTCTTTCTCCATGCGGATGAGCAAAATCTGTTGGTGGATGGCTTTCTTCCACAGGGCCCTGTAGTCAGCTGGACTGCGCTGGCCCTTCTCTCCACCAAAGCCCTGCTCTGGGGACAGGGGGCTGACCTGAGGGTCTTGATCCTGGTTCAAAGCCCGAGGAGAAAGTGGCAGCAGCTCCCGGCCATCCATGT
>TU104214
GCAGACAGCACCGTGGATTTCTTCTTTGTCCCACTGAACTTTAGTGCGACAGGGACTGCTCAACTTCCTGTCCCAAAGGGCCTGCACCTCTTTTGAGCACTGACAGACTTCCTGGTAATCCAGCTTCATTTTACGAATGTGCAATTCATCACGGCTGGCTGCAGGGAGGAAAAATGCTAGTGAGATTTTTATTTACTCAGAACAGCTGACACATGAATGCATTGCTATTATGTTCTAAAAGCATTCTAGGtgtcaaaatgaaatgatacATCATGTGCATCACCTGCTCTTACcacagagacagagggagatTCTTTGTCAGTGGTTCTCAAGTGTTAAGGTGTGACCCAAAAATGTGGACAGAAGGGGAAAACGCTGCCAACAGGCGCTGGTTCTCTTTCTCCATGCGGATGAGCAAAATCTGTTGGTGGATGGCTTTCTTCCACAGGGCCCTGTAGTCAGCTGGACTGCGCTGGCCCTTCTCTCCACCAAAGCCCTGCTCTGGGGACAGGGGGCTGACCTGAGGGTCTTGATCCTGGTTCAAAGCCCGAGGAGAAAGTGGCAGCAGCTCCCGGCCATCCATGT

Function

NR:

description
PREDICTED: TBC1 domain family member 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104213 False 368 lncRNA 0.55 2 14916800 14918840
TU104214 True 585 lncRNA 0.50 2 14916800 14918840

Neighbor

gene id symbol gene type direction distance location
morc3a morc3a,LOC107569945,LOC107724492 coding downstream 18675 14884111 ~ 14898125 (-)
vtcn1 vtcn1,LOC107712252 coding downstream 39144 14875492 ~ 14877656 (-)
trim45 trim45,LOC107668847,LOC107569387,LOC107658235,LOC107597366 coding downstream 42108 14868759 ~ 14874692 (-)
man1a2 man1a2,LOC107668846,LOC107724469,LOC107658234 coding downstream 54708 14795431 ~ 14862092 (-)
tent5c fam46c,LOC107724489,LOC107668849,LOC107658236,LOC107569365,LOC107597368 coding downstream 127510 14783457 ~ 14789290 (-)
klf5b klf5,LOC107740910,LOC107668908,LOC107720143 coding upstream 82624 15001464 ~ 15006670 (-)
gpr18 LOC107740919,LOC107681324,LOC107668869,LOC107748622,LOC107600424,LOC107570094 coding upstream 238264 15157104 ~ 15161278 (-)
gpr183a gpr183a,LOC107569509,LOC107740920,LOC107668870,LOC107748620,LOC107681323,LOC107600423,LOC103047691 coding upstream 245459 15164299 ~ 15170670 (-)
si:ch211-184m13.4 LOC107668872,LOC107748619,LOC107569521,LOC107740921,LOC107600422,LOC107681312 coding upstream 260634 15179474 ~ 15181677 (-)
zic5 zic5,LOC107569541,LOC107694589,LOC107740913,LOC107748614,LOC107681322,LOC107600378 coding upstream 345039 15263879 ~ 15267519 (-)
G70396 NA non-coding downstream 321458 14594263 ~ 14595342 (-)
G70393 NA non-coding downstream 326525 14589858 ~ 14590275 (-)
G70382 NA non-coding downstream 353808 14477332 ~ 14562992 (-)
G70332 LOC107724468 non-coding downstream 669472 14244287 ~ 14247328 (-)
LOC122352120 NA non-coding downstream 727799 14173817 ~ 14189001 (-)
LOC122352110 NA non-coding upstream 18284 14937124 ~ 14942863 (-)
G70494 LOC107740907,LOC107668887,LOC107600382,LOC107720110 non-coding upstream 56572 14975412 ~ 14981853 (-)
G70503 zic2a,LOC107600377,LOC107694587,LOC107569553,LOC107681317 non-coding upstream 94517 15013357 ~ 15275841 (-)
LOC122351681 dach1,LOC107668899 non-coding upstream 115979 15034819 ~ 15041730 (-)
LOC122351294 NA non-coding upstream 338148 15256988 ~ 15262676 (-)
LOC122351495 NA other downstream 544126 14359646 ~ 14372674 (-)
G70317 NA other downstream 663024 14196479 ~ 14253776 (-)
G70294 NA other downstream 976932 13938259 ~ 13939868 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other downstream 1003857 13879570 ~ 13912943 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 1103473 13807822 ~ 13813327 (-)
G70549 NA other upstream 384263 15303103 ~ 15305975 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other upstream 470378 15389218 ~ 15399437 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 852581 15771421 ~ 15771864 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 1801964 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 1898300 16817140 ~ 16823775 (-)

Expression


Co-expression Network