G70633 (pikfyve,LOC107719798,LOC107681306,LOC107731754)


Basic Information

Item Value
gene id G70633
gene name pikfyve,LOC107719798,LOC107681306,LOC107731754
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15642259 ~ 15644276 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU104479
TTTTTCTGGCTGGTGACTTGCCCATATCCTCCTGGACTGCTGTAAGTCTGGAACTGAGACCACTGTTCTGAGATTCCTGATGACTAGAGTaatcacacatatacacacaaataaacctCAGCAACAGCTTAACTCCCtttgaaatattacagaaataaatgacactcaATCTATGCATGAAACAGAGTCACACTTAAGAGCAGCAGCATGTCTTCACTAGGAGCTCATGCAAAACAAAAGTAACACTAAAACTCACTTCTTCCTCATCCCAATGGAATTTTTTCCTTTGCCAGGCCAGGTCCTCTTCCAGGAAGATGTTCCGGCTGGCTTTGCGGCCCCCCACAGGTGTGCGTGGTTCAGTGGGctccagaacacacacagagcagggCGAGTCTGACAGGGCGCTGAGATCTTCTCCGATGGAGTTTGAGTCAGCCGAGTGAGCATAGCTCAATGCTATCTTACGACAGTACGTACAAGCCCTTAAATCACCTGCAGTATGGCAGCGGGGGGGAGGAAAAAGAGACAGGATTAGAGAAGCTGGACAACCAAATAACCCTGGAAGAGACCTTTCTGAACTATTGAACCCAGTCTTCAGCTAAATGTTTGTGGTCCAAAACCAACCTAAAAATAAGAACAACCAAAGTAACTCAGAGATCAGAGTCATAATAATTCAGGTGATTTTAAGGCATAAAATATCAGCAAAAATATACTGAcaaaattttgcttttttaaataggtACCAGTTTTTCCTAAGATCAAAGTGCACAAATACAAATTCTTACCTTTCACAAAATCAAGCCAGTTAGTTCACAAAATTCAAAAGTCACTCTGCAACCCATTTAAATCAAAACCCAAAAATGTCAAACCACTGCAAACACACGCAGCATGCTAGACATCGTCTTACTCTttaatctgacatagctgctcATCTTCTTGCCGAAGACCTCATCAAAGAGGCTACGTCCACAAACCCGTGGCCAAAATGAGACCCCACGGTGAACACCACAACAACACTCACCCGTATAGCCCATGAACTTGCCAGGAATTTCCTGGTTGCAGCAACGGCTGCAGAAGATTTGACCGCAGAGTCGACAATGGTGACGGCGTCGAAAGGTTGTGAATTTCTCGTTGCAGTCATAACACTCCTTACACTGGCTGTCCGGCATCCAGTACTG

Function

symbol description
pikfyve Predicted to enable 1-phosphatidylinositol-3-phosphate 5-kinase activity; ATP binding activity; and metal ion binding activity. Predicted to act upstream of or within intracellular signal transduction; phosphatidylinositol metabolic process; and phosphorylation. Located in membrane and perinuclear region of cytoplasm. Is expressed in several structures, including brain; digestive system; eye; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Fleck corneal dystrophy. Orthologous to human PIKFYVE (phosphoinositide kinase, FYVE-type zinc finger containing).

NR:

description
PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104479 True 1178 lncRNA 0.44 2 15642259 15644276

Neighbor

gene id symbol gene type direction distance location
fgf14 fgf14,LOC107569606,LOC107600372,LOC107681314,LOC107690615 coding downstream 15468 15525358 ~ 15626791 (-)
nalcn nalcn coding downstream 152014 15425447 ~ 15490245 (-)
zic5 zic5,LOC107569541,LOC107694589,LOC107740913,LOC107748614,LOC107681322,LOC107600378 coding downstream 374740 15263879 ~ 15267519 (-)
si:ch211-184m13.4 LOC107668872,LOC107748619,LOC107569521,LOC107740921,LOC107600422,LOC107681312 coding downstream 460582 15179474 ~ 15181677 (-)
gpr183a gpr183a,LOC107569509,LOC107740920,LOC107668870,LOC107748620,LOC107681323,LOC107600423,LOC103047691 coding downstream 471589 15164299 ~ 15170670 (-)
ankrd44 ankrd44,LOC107719801,LOC107659898,LOC107595853 coding upstream 13238 15657514 ~ 15680839 (-)
sf3b1 sf3b1,LOC107731751,LOC107569635,LOC107659892,LOC107719800,LOC107595847,LOC107690614 coding upstream 38424 15682700 ~ 15692615 (-)
hspd1 hspd1,LOC107569661,LOC107690611,LOC107659893,LOC107595848 coding upstream 57639 15701915 ~ 15707664 (-)
rftn2 rftn2,LOC107690607,LOC107731757,LOC107719806,LOC107595849,LOC107569700 coding upstream 72046 15716322 ~ 15728800 (-)
satb2 satb2,LOC107731767,LOC107690605,LOC107569722,LOC107595845,LOC107659884,LOC107719815 coding upstream 190263 15834539 ~ 15876097 (-)
LOC122351574 NA non-coding downstream 3823 15628883 ~ 15638436 (-)
G70581 NA non-coding downstream 220682 15418999 ~ 15421577 (-)
G70503 zic2a,LOC107600377,LOC107694587,LOC107569553,LOC107681317 non-coding downstream 366418 15013357 ~ 15275841 (-)
LOC122351294 NA non-coding downstream 379583 15256988 ~ 15262676 (-)
LOC122351681 dach1,LOC107668899 non-coding downstream 600529 15034819 ~ 15041730 (-)
G70660 NA non-coding upstream 118107 15762383 ~ 15762669 (-)
LOC122352066 NA non-coding upstream 303837 15948113 ~ 15953976 (-)
G70894 NA non-coding upstream 474006 16118282 ~ 16120319 (-)
LOC122351188 NA non-coding upstream 961091 16605367 ~ 16631420 (-)
G70955 NA non-coding upstream 965994 16610270 ~ 16610561 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 242822 15389218 ~ 15399437 (-)
G70549 NA other downstream 336284 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 1269585 14359646 ~ 14372674 (-)
G70317 NA other downstream 1388483 14196479 ~ 14253776 (-)
G70294 NA other downstream 1702391 13938259 ~ 13939868 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 127145 15771421 ~ 15771864 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 1076528 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 1172864 16817140 ~ 16823775 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 1242477 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 1591596 17235872 ~ 17255491 (-)

Expression


Co-expression Network