LOC122351146 (ndp,LOC107565935,LOC107695497,LOC107756747,LOC107748154)


Basic Information

Item Value
gene id LOC122351146
gene name ndp,LOC107565935,LOC107695497,LOC107756747,LOC107748154
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16506720 ~ 16519350 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU104694
GTTTAGTTGATCCTGATAAGTGCCGGTCATCATagttgtaaacatttttaaacataatgcGGTTGGCATCATGACAACTTTGTGTTTCTAGatttgaaCAATTTCTGGGAGAAAAAGTACTTACCTTGGTTAAACATCATCTTCACTTAAATAAGTGGACAtcacagaaaaaggaaaagtcACACTTTTGCACCAAAATCAGGACTGGCTTCAATTAGCGGTAATCAGCCAGAGGGTCTTTCTCCATGACAAATTTATTCAGCTGCACTCCTCGCAGCTGCACGCAAGGATGTAACGGTAAGTAGCGGTTATCCGTGTCCCGCCCGAGCATCTCAGACGTACCGCCTTCAGTTTGGAGGTATGTGGACGGCAGCAGAAACACGTGCTTTTGAAAGGCTGCTTCAGGACGGAGCTGAAAGAGATCAGAGGGTCTGAGCGGGACGTGTGGCTGCAGTGACCCTCGCATCGAGCCAGGAGAACC
>XR_006251703.1
CGGGTGGCCAGTTGACATAGGCTGCTTTTGAAAGTCCAACGTTTAGTTGATCCTGATAAGTGCCGGTCATCATagttgtaaacatttttaaacataatgcGGTTGGCATCATGACAACTTTGTGTTTCTAGGCAAACGCAAATAGCTGTGTGCAAGGAGTATTGTCTCAAAGAAGatttgaaCAATTTCTGGGAGAAAAAGTACTTACCTTGGTTAAACATCATCTTCACTTAAATAAGTGGACAtcacagaaaaaggaaaagtcACACTTTTGCACCAAAATCAGGACTGGCTTCAATTAGCGGTAATCAGGTTACACCATGCAGGATTGTCAGCAGAGGACATGTGACCAGAAGAAGTAGAATCCCAGGCTGGCTCAATGCGACTGAGTTCCTCATATTGTCCACAACTTccacaagtaaaataaaagaaagcttGACCGTCTCCTACAGAAGACAACAAAGAGCTCTCCACTTCGCATATGTGAATCGAAACATGTAGTGAGCGTTCTCTTTAAACTCAGCCATCTTCTTGAGTGGTCTGGATGTGTCTGTGGGTAAAGAAAGGAAGCACGGTTAATCCAGGACGCAAGCTGCAGTAAAGACACCCACCTGAGAGCACCATATCAGaagaaacaaagtcattggagcgacataagggaagaaaaaaaaaaacaataaacaaatttaaGAGGAAGGCAGGAGCCAAGGCCGAGTGAGACATGCCAGAACCCCACTGCACTGAACTCCCTGAGCCAGACTGCTCTCTTAGGGACCGCGTCTTAAACAGGAGTCCCGTCAGCAGCTATAACGCCACTTAGGGAGCGGATCCCTGGAATGAACTGTCCCTAGGCGCGGCACTGGTGGTTGTGGAAATAGAGTATGGATCTTTTGATCATGGCTGATCCTCTCAGGCCGTGGCAAGGCTGGAGAGGGGCCTCGTCGTCTGCACCATTAGGACTGTGAAATTCCTGACATTCAAAAGCAGCCACAGGTTAGGGGCCGTATGGCGGGAGTTGTTGCACACTATTCAGTGCTGCTTCTCACCTCTCTCGGGCCTCTGTGTTGTGATGCAGTTAAAAACCATAGTGTCTGTTTGATTTAGAGGATATAAAATGTGGGAACAACAAGCTTTTCGTGTCAGGGCATCTTCACATAGTGATTTTTCATTGCAGACACTGCCAGAACTCAAGGGGATCGTGAGCAGGCTCTTGatatctctgtctctgtctcttgtTCTAACCCTTGCTGCTCCTTCTGCTTAAGATAAAGCACAGACTGTCATTTTAAGAAGGATTTTCTACTCAAAACCACCTAAGGGGTTGGATTATGTGGATTCAGACAATTGAACCAACATTATTAGTTATAGTTTCCTCAACATTGCTGTGCAGAAATGGGCTCATTTGAAGATAGAGCTCAGTTTCTGAGGTAATCCATCTCAAAGTCGCCTAATGCCTGCAAACCAAACTATGCTGAGAAAGTAATCAAATTGGAAGAACATTTAATCTGGATCATAATGCTTGCACAATGTTGTATAAAAGAATCATGATACTGGGGTAAACACCATGTTAATATTGAGTAGCTTAaattttagacacaatattgGATGTtagtatgtatatttttgcaaaaaatcgTTTTGCATATTCTTTTGTGAAATATGTTGTGTATCTTACTATACACAGTAGTCTTTTTGTGAATGATGcagttttttaatgaatcattggAGAAAAGATTCTctgtactatttttaaatacactagCGGATTTGCATACTAAGTAGGTAGTACATTTGAATTAGAACATATACTTTGTAACCGTTAAAAAAGTACAGTCTATGTAGATTAAATGTGTAGTATGAATGAAATGCAGATATACTAGA
>XR_006251704.1
CGGGTGGCCAGTTGACATAGGCTGCTTTTGAAAGTCCAACGTTTAGTTGATCCTGATAAGTGCCGGTCATCATagttgtaaacatttttaaacataatgcGGTTGGCATCATGACAACTTTGTGTTTCTAGGCAAACGCAAATAGCTGTGTGCAAGGAGTATTGTCTCAAAGAAGatttgaaCAATTTCTGGGAGAAAAAGTACTTACCTTGGTTAAACATCATCTTCACTTAAATAAGTGGACAtcacagaaaaaggaaaagtcACACTTTTGCACCAAAATCAGGACTGGCTTCAATTAGCGGTAATCAGCCAGAGGGTCTTTCTCCATGACAAATTTATTCAGCTGCACTCCTCGCAGCTGCACGCAAGGATGTAACGGTAAGTAGCGGTTATCCGTGTCCCGCCCGAGCATCTCAGACGTACCGCCTTCAGTTTGGAGGTAT

Function

symbol description
ndp Predicted to enable cytokine activity. Acts upstream of or within retina vasculature development in camera-type eye. Predicted to be located in extracellular space. Predicted to be active in extracellular matrix. Human ortholog(s) of this gene implicated in Norrie disease; X-linked exudative vitreoretinopathy 2; and retinopathy of prematurity. Orthologous to human NDP (norrin cystine knot growth factor NDP).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104694 False 481 lncRNA 0.46 3 16506760 16510694
XR_006251703.1 True 1881 lncRNA 0.41 6 16506720 16519350
XR_006251704.1 False 446 lncRNA 0.43 4 16506720 16510575

Neighbor

gene id symbol gene type direction distance location
LOC122352002 LOC107673670,LOC107748160,LOC107565946,LOC107756785,LOC107595835,LOC107695502 coding upstream 267067 16237206 ~ 16239653 (+)
LOC122352001 LOC107565945,LOC107695503,LOC107756786 coding upstream 270432 16233277 ~ 16236288 (+)
LOC122352000 LOC107673669,LOC107748159,LOC107565947 coding upstream 273664 16230538 ~ 16233056 (+)
nyx LOC107673668,LOC107748158,LOC107565934,LOC107595833,LOC107695501 coding upstream 303581 16197730 ~ 16203139 (+)
ddx3xa ddx3a,LOC107695499,LOC107673666,LOC107748156,LOC107565941 coding upstream 309231 16185527 ~ 16197489 (+)
kdm6a kdm6a,LOC107748151,LOC107695454 coding downstream 21882 16541232 ~ 16580313 (+)
ccdc80 ccdc80,LOC107748150,LOC107673676,LOC107695464,LOC107756780 coding downstream 165396 16684746 ~ 16694462 (+)
f5 f5,LOC107748149,LOC107673674,LOC107565953 coding downstream 180415 16699765 ~ 16713826 (+)
gpr161a gpr161,LOC107695469,LOC107595811,LOC107756778 coding downstream 194624 16713974 ~ 16720587 (+)
gpa33b LOC107673683,LOC107756739,LOC107595818 coding downstream 305484 16824834 ~ 16829252 (+)
G70767 NA non-coding upstream 53902 16452306 ~ 16452818 (+)
G70766 NA non-coding upstream 116805 16389646 ~ 16389915 (+)
G70764 NA non-coding upstream 173671 16332644 ~ 16333049 (+)
G70757 NA non-coding upstream 282780 16222766 ~ 16223940 (+)
G70758 NA non-coding upstream 284137 16222211 ~ 16222583 (+)
G70791 LOC107756741,LOC107695496,LOC107595885 non-coding downstream 61842 16581192 ~ 16581462 (+)
G70792 si:ch73-147f11.1,LOC107756741,LOC107595885,LOC107695496 non-coding downstream 62578 16581928 ~ 16583350 (+)
G70793 NA non-coding downstream 64415 16583765 ~ 16584095 (+)
LOC122351189 NA non-coding downstream 67291 16586641 ~ 16599872 (+)
G70794 NA non-coding downstream 74768 16594118 ~ 16594380 (+)
rabl3 rabl3,LOC107569739,LOC107690631,LOC107659889,LOC107595844,LOC107736356 other upstream 605000 15899427 ~ 15901720 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other upstream 717018 15734570 ~ 15789702 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other upstream 790819 15708201 ~ 15715901 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other upstream 1081359 15401127 ~ 15425361 (+)
LOC122351767 NA other upstream 1917281 14587082 ~ 14589439 (+)
G70814 NA other downstream 209157 16728507 ~ 16731361 (+)
mpc2b mpc2,LOC107695492,LOC107673680 other downstream 226543 16745893 ~ 16749701 (+)
si:ch211-218d20.15 LOC107748193,LOC107695487,LOC107756736,LOC107673701,LOC107597587 other downstream 397411 16916761 ~ 16919290 (+)
jam2b LOC107748130,LOC107673722,LOC107695483,LOC107595821,LOC107597562 other downstream 684447 17203797 ~ 17208220 (+)
G71130 NA other downstream 819777 17339127 ~ 17339622 (+)

Expression


Co-expression Network