G70800


Basic Information

Item Value
gene id G70800
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16605396 ~ 16606343 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU104726
TCTCATAGTAGGAATAAGTCTTTTTCAAGCATGCGTAACATCTTAACGACTCACCTTTTCAATTTCTGAGCAGAGCAGGATTTTTCTGCTGGCCTGAAACCCAGCAGACAATGTAGCTGTAGATTGTACCACACAGAAATCTACATTGTATGCCAGGTTCACGACAACACAAAAGAATTCATCCTTCGCTCCCCAAAACCAATGCGATTCAGCATGTCTGCGCATTTAACTCTAATTATTTGTCAGCCTTCAACAACtcaaaaacatttgcacaaagACAGCCCCTTGTGACAGGCAAATCACAAAGAGAATGTGACATGTCGCCTTGTCCTTTGTTACCTAATCACTTAAACTGAATCTTCAGCAGTCAAACAAGGAACAATGTCTCAATCCTTTCTTTCAAAGACGTCTGAAATGGGTTCCCGAGACTTTTAGCTCCACTTTGACAGTTCACTCACCttgattaaatttatttaagaaaataaaaaaggaaaagcccACAGTAAACTAGGCTAAAAGTGCAAAAGCTCTACCAAATCGCTCTGGTCGAAGAGGGGTGTTGTGACAAGAGCCCTCTTTAACGTCCATGAAAGAGCGAGTCCTATTCTGACAGGATGAGGCACACATTGTGATAACATACCACACAATCTGAAAGGAATGTGCCAACAGGAAGCAGAAAATGCCATCAGAGACCCAGTAGCCAGATGTAGCTGCTGATTGCAACACAGGATCTACACTGACTACTGAGCACCTCATGAGCACCCTAACAAGCCGCTGGCAGCACTCGTCCACTTGAGCCGTCCCCAGCGCCTGAGGAAGACAGAGACAAAGAAGCGAATGGTTAGACAACCCCAAATCAAAGTGTCTGGAGCTCTGGAGGACGACAACAGCCCTCCTTTTTGCTTGCAGCGCACAGACAGGCTGCACCGGGGAGGGGGAGCTAATCTC

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion

RNA

RNA id representative length rna type GC content exon number start site end site
TU104726 True 948 lncRNA 0.45 1 16605396 16606343

Neighbor

gene id symbol gene type direction distance location
kdm6a kdm6a,LOC107748151,LOC107695454 coding upstream 25083 16541232 ~ 16580313 (+)
LOC122352002 LOC107673670,LOC107748160,LOC107565946,LOC107756785,LOC107595835,LOC107695502 coding upstream 365743 16237206 ~ 16239653 (+)
LOC122352001 LOC107565945,LOC107695503,LOC107756786 coding upstream 369108 16233277 ~ 16236288 (+)
LOC122352000 LOC107673669,LOC107748159,LOC107565947 coding upstream 372340 16230538 ~ 16233056 (+)
nyx LOC107673668,LOC107748158,LOC107565934,LOC107595833,LOC107695501 coding upstream 402257 16197730 ~ 16203139 (+)
ccdc80 ccdc80,LOC107748150,LOC107673676,LOC107695464,LOC107756780 coding downstream 78403 16684746 ~ 16694462 (+)
f5 f5,LOC107748149,LOC107673674,LOC107565953 coding downstream 93422 16699765 ~ 16713826 (+)
gpr161a gpr161,LOC107695469,LOC107595811,LOC107756778 coding downstream 107631 16713974 ~ 16720587 (+)
gpa33b LOC107673683,LOC107756739,LOC107595818 coding downstream 218491 16824834 ~ 16829252 (+)
ildr2 ildr2,LOC107695466,LOC107756772,LOC107673718,LOC107597502,LOC107748142 coding downstream 224090 16830433 ~ 16845202 (+)
LOC122351189 NA non-coding upstream 5524 16586641 ~ 16599872 (+)
G70794 NA non-coding upstream 11016 16594118 ~ 16594380 (+)
G70793 NA non-coding upstream 21301 16583765 ~ 16584095 (+)
G70792 si:ch73-147f11.1,LOC107756741,LOC107595885,LOC107695496 non-coding upstream 22046 16581928 ~ 16583350 (+)
G70791 LOC107756741,LOC107695496,LOC107595885 non-coding upstream 23934 16581192 ~ 16581462 (+)
G70802 NA non-coding downstream 3525 16609868 ~ 16610120 (+)
G70803 NA non-coding downstream 8342 16614685 ~ 16614917 (+)
G70804 NA non-coding downstream 9195 16615538 ~ 16616064 (+)
G70837 pou2f1,LOC108266565 non-coding downstream 208487 16814830 ~ 16815402 (+)
G70841 nxpe3,LOC107597504,LOC107748146,LOC107673677,LOC107695470,LOC107756776,LOC107595812 non-coding downstream 260147 16866490 ~ 16867502 (+)
rabl3 rabl3,LOC107569739,LOC107690631,LOC107659889,LOC107595844,LOC107736356 other upstream 703676 15899427 ~ 15901720 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other upstream 815694 15734570 ~ 15789702 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other upstream 889495 15708201 ~ 15715901 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other upstream 1180035 15401127 ~ 15425361 (+)
LOC122351767 NA other upstream 2015957 14587082 ~ 14589439 (+)
G70814 NA other downstream 122164 16728507 ~ 16731361 (+)
mpc2b mpc2,LOC107695492,LOC107673680 other downstream 139550 16745893 ~ 16749701 (+)
si:ch211-218d20.15 LOC107748193,LOC107695487,LOC107756736,LOC107673701,LOC107597587 other downstream 310418 16916761 ~ 16919290 (+)
jam2b LOC107748130,LOC107673722,LOC107695483,LOC107595821,LOC107597562 other downstream 597454 17203797 ~ 17208220 (+)
G71130 NA other downstream 732784 17339127 ~ 17339622 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G150576 NA non-coding NC_048566.1 CM023220.2 47365665 ~ 47366117 (+)
rainbow trout (Oncorhynchus mykiss) G1772992 NA non-coding NC_048586.1 CM023240.2 9877812 ~ 9878249 (+)
striped catfish (Pangasianodon hypophthalmus) G82800 NA non-coding NC_047599.1 CM018545.1 14919754 ~ 14920334 (+)
tiger barb (Puntius tetrazona) G66351 NA non-coding NC_056706.1 CM032075.1 23434118 ~ 23435033 (+)