G70986 (pou2f1b,LOC107748141)


Basic Information

Item Value
gene id G70986
gene name pou2f1b,LOC107748141
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16817140 ~ 16823775 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU104983
GACGGAGGAGCAGCGAGTCAAGATGAGAGTTCAGGACCAGATTCTAGAATGAGTAATCCATCGGAAACAAGTAAATGTGCAATGGAGAGCGGGGACGAAAACACTGGTGCCCAAACAAATGGACTGGACTTTCAGAGGCAGACTGTGCAAACAACAAGCGCAATCACCAATGCACACGCACAGGCCTTGCTCCAACAGTTGACTTTGACTCCAGCGCAGCAGCAGTTATTGCTGCAGCAGGCTCAGGCTCAGCTCTTAGCAGCAGCGGTGCAGCATTCAGCCGGCCAGCAGAGCAGCACTACAGGAGCCAGCATCTCTGCCTCCGCTGCCACCCCATCACCCA
>TU104984
CATGCTGATGCTGTGAGTGAGTGCATCGGTGAGCCTCTGTATTGTGTTTTGAGGATTTGGgcttaaatattcaaaatggcGGACGGAGGAGCAGCGAGTCAAGATGAGAGTTCAGGACCAGATTCTAGAATGAGTAATCCATCGGAAACAAGTAAATGTGCAATGGAGAGCGGGGACGAAAACACTGGTGCCCAAACAAATGGACTGGACTTTCAGAGGCAGACTGTGCAAACAACAAGCGCAATCACCAATGCACACGCACAGGCCTTGCTCCAACAGTTGACTTTGACTCCAGCGCAGCAGCAGTTATTGCTGCAGCAGGCTCAGGCTCAGCTCTTAGCAGCAGCGGTGCAGCATTCAGCCGGCCAGCAGAGCAGCACTACAGGAGCCAGCATCTCTGCCTCCGCTGCCACCCCATCACCCA

Function

symbol description
pou2f1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human POU2F1 (POU class 2 homeobox 1).

NR:

description
POU domain, class 2, transcription factor 1 isoform X9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104983 False 343 TUCP 0.55 4 16817140 16823694
TU104984 True 424 TUCP 0.53 4 16817140 16823775

Neighbor

gene id symbol gene type direction distance location
LOC122352097 me3,LOC107748144,LOC107595810,LOC107695468,LOC107756775,LOC108426042,LOC102313335 coding downstream 49955 16761873 ~ 16767185 (-)
LOC122351201 nxpe3,LOC107748146,LOC107673677,LOC107597504,LOC107695470,LOC107756776,LOC107595812 coding downstream 56968 16752003 ~ 16760172 (-)
slc35a5 LOC107748197,LOC107565955,LOC107673679,LOC107756781,LOC107695476 coding downstream 118501 16694754 ~ 16698639 (-)
dipk2b si:ch73-147f11.1,LOC107756741,LOC107695496,LOC107595885 coding downstream 233079 16579731 ~ 16584061 (-)
fundc1 fundc1,LOC107673665,LOC107748200,LOC107565940,LOC107695457,LOC107595886,LOC107756742 coding downstream 276489 16538368 ~ 16540651 (-)
grtp1b grtp1b,LOC107748194,LOC107695480,LOC107673704 coding upstream 74888 16898663 ~ 16902174 (-)
ppp2r3b ppp2r3b,LOC107673721,LOC108426065,LOC107748139,LOC107695472,LOC108266308 coding upstream 114509 16938284 ~ 16954349 (-)
LOC122352140 NA coding upstream 293242 17117017 ~ 17131427 (-)
slc25a6 slc25a6,LOC107597494,LOC108426068,LOC107595824,LOC107695486,LOC107756767,LOC108266970 coding upstream 308695 17132470 ~ 17136795 (-)
asmtl asmtl,LOC107597490,LOC107673687 coding upstream 313366 17137141 ~ 17143357 (-)
G70979 NA non-coding downstream 65202 16751035 ~ 16751938 (-)
G70965 NA non-coding downstream 96567 16719515 ~ 16720573 (-)
G70966 gpr161,LOC107695469,LOC107756778,LOC107595811 non-coding downstream 100056 16715522 ~ 16717084 (-)
G70967 NA non-coding downstream 102038 16630486 ~ 16715102 (-)
G70962 f5,LOC107756778,LOC107748149,LOC107565953,LOC107673674 non-coding downstream 103294 16712819 ~ 16713846 (-)
G70991 NA non-coding upstream 3283 16827058 ~ 16829659 (-)
G71005 NA non-coding upstream 41503 16865278 ~ 16865589 (-)
G71006 NA non-coding upstream 42403 16866178 ~ 16866422 (-)
G70981 nxpe3,LOC107597504,LOC107748146,LOC107673677,LOC107695470,LOC107756776,LOC107595812 non-coding upstream 42717 16866492 ~ 16867522 (-)
G71035 NA non-coding upstream 93449 16917224 ~ 16919314 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other downstream 70918 16720804 ~ 16746222 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other downstream 1045276 15771421 ~ 15771864 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 1417703 15389218 ~ 15399437 (-)
G70549 NA other downstream 1511165 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 2444466 14359646 ~ 14372674 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 62978 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 412097 17235872 ~ 17255491 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other upstream 540412 17364187 ~ 17521560 (-)
sema5ba sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063 other upstream 1427461 18251236 ~ 18366267 (-)
LOC122352185 NA other upstream 1745980 18569755 ~ 18569882 (-)

Expression


Co-expression Network