G71293


Basic Information

Item Value
gene id G71293
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18222314 ~ 18226787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU105518
CTCcctaaaaagtaagaaaaaataaaaaatctaaattcagcACCACTGCTAATAAACCCCCCTCATGATTCGACCTCACTAAACTAAGCCACTAAAACTAAGCACTGGTTTCTTTGAGAAGGAAGGCATGCTGATGTGTGTGCTAATGTTTTAGGGTCTGCTGCTTTTGCTTTTCACATCACTGGACAATACATGTAAAGTAAATGCTAACAAATGCTAATGTATGACAACACCACCATAGTTTTTCATGCATGGGGCCATTGCTCACCTCGCCATGGCCACGCCAAACACACAGCCTCCAACGATGGACCAGAACCCGATCCAGCCCGCGTCCACCTGTGAGAGCAGAGAAAGGTACGATCAACTGGGAATATTCGCTGCTTGTAATGCTGGACATCACTCGTGGAGCAGCTAGATGGATGGAGAGCCAGGGGCGTCTGCAGTGTCGATCAGAGAGAAGAATAAGCTGCCAGACATCATGCTGTCCACGAACATGTCTTTGATGAACAGTCTGGTTCAACAGCAGACTTCATAAAACAGATGGTCTATATCAGACATGGCTGAGGTCAACCACAGTATTGATAAGAGTGCAGGAAGAACAAAAAGTTTCTCTATGATGACTAAATAAAATGGTGTTTAAACTTCTggttttttacacacacacactcctgttcaaaagttttgagttggaaattttttttaaatgttcaggaAAAAAGTTTATGCTCACcaattaaaaaattctaatgtaatatttttattcctgtGCAATTCTCAGtcttcacatgatcctttagaaatcattctaatttacAGACAGtcagattagatagatagataaatggatagattgatagataaaCAGCTGATATTATTGCTTTATATAACCCATTTGTCAATAAACGCCTTCTCAGccaagaaaaaaattgttctaaaaaacattgaaaaagcaaacacatttgCCTCTTGTCCAGTCAGTTTAGAGAAACTGAATAAACTGCTCTATAACATACCACATAAGTAGAATAATAATTCCGGTTTGAAAACAGCATCAAGCTTTGATTTGGCTGATTTGATTGTTAGCGAAGCTAACAGAGTGATTAGAAAAGCTGGCTATTTCTGGGAAACATCCTCGATGTGTGGGGGTGGGGATGGAGAGAAGAATGCTGGCTAAGCTCTCCAGCATCAGGAACAACATCTCTCACCCACTGCACAGGACTGTCACTGCACAGGAAAGCACCTTCAGCAAAACACTGATCCCACAACAGAACATTCCCTCAAGGTCCTTCCAACCTGGATGTACTTTAACCCGAGCTGAATCTTTGGGTGGATTTTATTGTCACAATTTAGACAACCCTGggctcatgaatattactaAGCTCATTGTTAGCTAATCTTCCTGTggctaattaatattcatgaattgTGCCAATTTAATACACAAATTCCACGTTGTTTTGGTATGTAGTAGAGCTTACCTCTGAgatcaaatgaaatattacattaatgtgACCAAAAACCAGTTACAAATTATTCCATGCCTTTAAAATGGTCAATGTCACACTGACACACTTCTATAAGTTTAGCCTTGTAAAATGTGACGCTCAGTTTGGGCACAACTGAACATGTGACATCTATTTGAATGCACAAACTTGAATGTAATGTTTACGTTACCATCTGTGGAGAACACAGTAAGACACCGCTGCTCTGATAATTTATAAGGTCTGAGAATACAAGTGCTGATGAAATGTCCTTCTGCAGGGGTAAAAGACATCTTTATCTATTAGAAATAAACATCAAGcactaaaacatacagtaaatcaAAGCGCATAATCAGAATGTAATATATCATGTGCTTTTAATGCGAGCCAACAGAGGAAGACTACATAATTTAATATCAGTTGATGGTGATGTGTGCTAAAAGTTTCGGGGAGTGGGGGGTGATAGAGAAGTTTGGCCCCCTGGTTCCGGCTCCCCTGGATGCATTAATTGCTATTTCCATTAGGTGATTTATGTCTACTGCTGTAACACTGCTATTTCCCAGAGGAAATGAAAGAGGTATCATACACTATGCTATTTCTTTTGGCAAAAAGTGTAACTCATGTGTGTccaaaccattattttaaattcaaatttttctGTCATGCAGCATAGTACACTGGAACCGTGAGGACTTGAGACAAAAAGGAGAATGATACGGTGGTTCCCCCTGTTAAAATGTCGTTACATGCGATCTATGCAGTTTAGGAAATGCTTTGGTCATCACTTGAGATCCAGTAAGCTAATAATAACACTGAATCaatcaaaaacaatcaaattatAAACAGATTCAACAGAAAACTAGGCACAGTGCTAAATCCAGCCCAAAGTAACAAAAACATCATTCGTTATATAGTGTCAGTATAAACTAACATCACAGAAATCACATTCTTTCTGGGAATGCTAAACACTTTTTCCAGGTATTCTAGACCTCCTTGCTTGATGCTCTTAGCTCACTAACATGTTTACACTGGAAACCTCAAGGGCAAAAAACATGGCATCACTCACTGAAATGGGTTTTAAATCAGAAAACCACACTGCTACACCTATAGTTTTAATCAGGGAGAAAGAGTTCCACACACACCACAAGCCTTAGTTTTGAGCAGTTTGAGTCAGCTCtgataaaaaagtcatttttaatgtttctcaaACCCAGCAATGCACATTCTGTTTGATGATAACTTTTCAAGGGTAAAAGGTGTCTGTCTAATCAGTGCACAGCCATTGTGCGCAGGCTTAATAGCCATTTACCATTAATGAAGCATTTAGACAACGTTGATTAATGTAGCGGAGGACCATGCACTTAAATGATGCTAATTATTGTTGTACAACTCTACATGGTTACTGCCTCAGGGTTCCACTGTTCCATTTGCAAATTACCGTGTGCGAATGTGGAAAGGTATTTGTTGTTGACTTCTGACACTGATCAAAACCTAACTTAAATAAAAGCCTCAGAATATAAAGGCTTCTGACCTCATTtgcaaattacatttcatatgGAAAACTGGATCTCTTTCATTGCTTTCCATCAAAAGGCAACAGAGAGATCATTCagagtaaaataaattgttaacactttacaaaaaagTCCTAATATACAATGGATTAGGTATTAAGAAACAACAATGAACATTAGAATAAATGTTATACGGAATACACAAGTTAACATAGAAGTCAACTTGTGCAACAATGTTTCTGCTATAATTCTGAAAGTAGTTTTTCATGGCCAGGTTTGCGAAGTGGTTAGGCAAAATTAATTGTTGAAGTTTAATACTTCCCTAACCAGAATGTCTGAGGAATATCAATACACTGCTGTCTTGTGAGcactttcctctttttttttacacaatggGCTCCTAgaaatctatatataatttcagtttTCTGATAACACTCATTTCTCTTCAACCAAATTTAAATGACTAGGAAAAAATACCTTCTtaacaaaagtgaaatattaaaatgggaGAGGGAAATGCTTGCGGCGTATGCTTTcaattgttgttaaaaaaagaactgagACTTGAATGAGAAGACGGAAAATTCAAATTAGTCTCACGATGGCTTTGGTAGCAGATACATATtggagaaaaaggaaaaagagctTCTATCTTCAACTTGCATGGTTTTCTTTCCAATACCAGTTGAAAGACCACCTAGTTTACCTGGATAGAAACTACAAGACATCATCTTTGTCTCGGTAAGCCCGTAATTCAGCTAGGTCTACAATGTTGCGTGATTGCTTTGGCCCATAACTCTCACATTTCAGATGCAAATGTGAGGAGGCTGGGGAGAATCTGAAACTCTGAGGTGGAGAGCTCATCTCATTAAGCTGTGGTTGGCCCATCAAAGATGGAGTACTTTTGTGAGTATGCAAATAAAAGCGTCTTGAGCATGTATGTTTGATTAGATTCTGATGAGCTCTGTCTGGAGAGGGAAAGGATGGAGAGGGCTATCTTCATATGGATAGCTCTGGATTTTCAAAACTATAATTagatgtttttaacagcttGTTTTCAAGTTCAAAGTCCACCCATTCAGGCCTGCCAGCTTTTTAATGAGAAAGTATAGAAAGGCAAACAGTTTTTCGGTCAGTTTCCAGTCAAtacttcactgtgtgtgtgtttgtactccCAGGGTTAATTATGAGTCAATAACCATTTAATCCAGGGAAATTACATTTcatcttaatcataattaaactcaaagaagGTGCAAATGATTTGTACATCTGATAAATTAAACTTACTTCAGACACAAAGCATACTGAAACACACGAGTGAAAGTAATCCGGTCTTCcaatattttgatcaattcatAACAtccaattatttaattaagcaTTTAACAATAGAAACATAAACTAGACATCCTTCTTTTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105518 True 4422 lncRNA 0.38 2 18222314 18226787

Neighbor

gene id symbol gene type direction distance location
hspbap1 LOC107722869,LOC107661136,LOC107660643 coding downstream 16853 18197126 ~ 18205461 (-)
ralba ralba,ralb,LOC107746258,LOC107597482,LOC107596059 coding downstream 183646 18028354 ~ 18038668 (-)
dnajc28 dnajc28,LOC107748188,LOC107673653,LOC107597584,LOC107756751,LOC107656783,LOC107569146 coding downstream 570193 17649975 ~ 17652121 (-)
zp2l1 NA coding downstream 647940 17559528 ~ 17574374 (-)
appb appb,LOC107597486,LOC107748127,LOC107595805,LOC107756757,LOC107695460,LOC108426075 coding downstream 906496 17299245 ~ 17315818 (-)
adcy5 adcy5,LOC107555914,LOC107661140,LOC107660638,LOC107596066,LOC107714401 coding upstream 200285 18427072 ~ 18492873 (-)
hacd2 hacd2,LOC107660639,LOC107741899,LOC107661144 coding upstream 267299 18494086 ~ 18499894 (-)
si:dkey-219c10.4 LOC107741933,LOC108266238,LOC106586425,LOC102795313,LOC101468032,LOC107673728,LOC107660664,LOC107555910 coding upstream 307865 18534652 ~ 18545151 (-)
ccdc93 ccdc93,LOC107741907,LOC107555923,LOC107596073,LOC107714249 coding upstream 399630 18626417 ~ 18633604 (-)
znf142 LOC107741908,LOC107555924,LOC107660628,LOC107714222,LOC107596070,LOC107673749 coding upstream 415683 18642470 ~ 18649055 (-)
LOC122352098 NA non-coding downstream 486395 17733203 ~ 17735919 (-)
G71194 NA non-coding downstream 529494 17665519 ~ 17692820 (-)
G71190 NA non-coding downstream 560869 17661216 ~ 17661445 (-)
G71175 NA non-coding downstream 576394 17644438 ~ 17645920 (-)
G71187 NA non-coding downstream 578638 17643356 ~ 17643676 (-)
G71339 NA non-coding upstream 281653 18508440 ~ 18510009 (-)
G71341 NA non-coding upstream 284386 18511173 ~ 18511528 (-)
G71389 NA non-coding upstream 382040 18608827 ~ 18697031 (-)
G71400 LOC107555927,LOC107660626,LOC107741910,LOC107660658,LOC107660625,LOC107578255,LOC107714212 non-coding upstream 426840 18653627 ~ 18654751 (-)
G71424 NA non-coding upstream 461711 18688498 ~ 18692089 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other downstream 700754 17364187 ~ 17521560 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other downstream 966823 17235872 ~ 17255491 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other downstream 1332767 16886753 ~ 16889547 (-)
G70986 pou2f1b,LOC107748141 other downstream 1398539 16817140 ~ 16823775 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other downstream 1476092 16720804 ~ 16746222 (-)
sema5ba sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063 other upstream 24449 18251236 ~ 18366267 (-)
LOC122352185 NA other upstream 342968 18569755 ~ 18569882 (-)
ankar ankar,LOC107728908,LOC107660654 other upstream 1493155 19719942 ~ 19731794 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other upstream 1569465 19796252 ~ 19829475 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other upstream 1607133 19833920 ~ 19852625 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G53415 NA non-coding CI01000009 null 5013895 ~ 5017158 (-)
mexican tetra (Astyanax mexicanus) G44996 NA non-coding NC_035901.1 CM008304.1 25209296 ~ 25209544 (-)