sema5ba (sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063)


Basic Information

Item Value
gene id sema5ba
gene name sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18251236 ~ 18366267 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU105535
AGGTCGATCGGTGGAAGTCATTCACAGAAAAGGGATACTGCACAGGAGACCTACGCAAAGCGGAGATTGCGGTTTATGCGTTGCTTTTTACGTACGGCAGAGTTTACTCCAGAGGAAGAACATCAGAAGGCTACAGAAGGATTGCTACCTGTTTCAACAGTCCTGCATCCTCAAAGATGACATGCTCGTGATGCCTCTGTGCATTCCAGAAGCCCATCTTGGCAGCTAGAGGAGAGGAGAGGTCGGCCTCCGTCACCATGACAGTGTTGCCACGGGCCGTGGCTTCCTGGCTGTGCCCGGCCTTATTCTCTGTTTCATCACTCTTCCATTTCCTGCTACACTATCCCAGAGGCCCCCTCTCCCCACAGAACCCTCCCCACCCCAGCACCCCACACAAGGCCGGAGTGTACCCGCCTAGAGCACCCCGTCATCTCTATTCAAGCTCTAAGTCCTTTGATCTCCAGTTTCTCCCATCCTGGTGTAAGGGACTACTCTCAGCTGACCCTTGACCTCACCAGGAATGAACTTATAGTGGGAGCAAGAAACTACCTCTTCAGACtgaatttaaacaacatttcccTAATTCAGGGTTCACTCTGCTTCACCTGATAGCTACAGGTGTGTCGTGCTTCCTGGGTGCCGGTCTGCTGTCCTTCCTGGTGTATGTGTACTGTCAGCGTTTCCACAAGCCCTCGCAGGAGTCTGCCGTCATCCATCCCACCACTCCCAACCACCTCAACTACAAGGGCAACACCACACCAAAGAATGAGAAATACACACCCATGGAGTTCAAGACTCTGAATAAGAACAATTTGCTGCCGGATGAGAGGACCAACTACTTCCCATCACCACTTCAGCAGACGAACGTGTACACCACCACGTACTACCCCACAGCACTGGGCAAATATGACTACCGACCAGACTCCTCGCCGTCTCCTTGCAGAACCTATAACCACAGCTGAGACATTTGTCCCATCCGTAGCTTTATTGCCATCTCCTAAAGGCCTCCACTTTCCCCACCCATACACTCTGCACTGATAAGGTGCTTTTTCCAACATTCCAGCCGATTATTTTCCCTAAAGATCTCTCCCCCAAGGACTATGTCACCTAAGTCATGCCTTACGGTGTCCGACTGGGGGAAAAGTCCAGTGATTCAAACAGCACTTTTTAAAGATTGTGTAGCTACACTGACTTTGATATACTGATGTCTTGATTGATCGCTGCAGAACTCCCGTTACTGGAAAGAGGTTTTGCTGAAGCTCAAGGTGGGAAGAAAAAATTGCGCTGGCATCCCGTACCACTCCAACAATATCCATTACGGGAAATGCAATCTGCCACACTGTGGCAGTTCTTTTTGAAACTACAGAAGAAGAATAGATGGACACCAGACAAAAGAGAGCAATCAATGGTGACATTATTAGGTTCGGTTAGAACGGTGGAATTGTGTTACCTTTGGATGCAAATGTAAGGACGTCCCACTGACTTCCAACCTTTTGAGGGGCAAATCTCTGACAAAAGAGGATGGGTTGCACGATCAATGCATCTCCTGGGTGAACTCTTCAGATATGAGTTCGGAACAAAGCTGCAGAAAAAAGAACTGCTTAAAATAGGATGCCATTCAGAACGGACTCTTATCAGAAGCGAAATATAGATTTTCAAGCACGTTAAAAGGCCAGAAGAATGCGTCATTATTTCCCTGAAAAGTTGAAACGCCTTTCTTACTTGCGAATGCATGGGAATCGAGGAATATTGCACCAACATGGAATATGCTTAGATCTGAAGCAAACATGTTCTACTCTCTTACTGTAAGTCCCGGTGGTCATATTAAATATGACTGGGTTCAAACTGAGACggactatattttattatgaaaaaatgtagaaaatactGATAGCTTGGCACTTGTTTTATACGGCTATTTTAAAGAGGGAATTATTCAGCAGTTGTAGGATAGATGGATAATAGAGTTTATTTAAGATGTGAGTTCAAACATTGACGGA
>TU105536
AACCTCAGGCCTGTCCAGGGTTCACTCTGCTTCACCTGATAGCTACAGGTGTGTCGTGCTTCCTGGGTGCCGGTCTGCTGTCCTTCCTGGTGTATGTGTACTGTCAGCGTTTCCACAAGCCCTCGCAGGAGTCTGCCGTCATCCATCCCACCACTCCCAACCACCTCAACTACAAGGGCAACACCACACCAAAGAATGAGAAATACACACCCATGGAGTTCAAGACTCTGAATAAGAACAATTTGCTGCCGGATGAGAGGACCAACTACTTCCCATCACCACTTCAGCAGACGAACGTGTACACCACCACGTACTACCCCACAGCACTGGGCAAATATGACTACCGACCAGACTCCTCGCCGTCTCCTTGCAGAACCTATAACCACAGCTGAGACATTTGTCCCATCCGTAGCTTTATTGCCATCTCCTAAAGGCCTCCACTTTCCCCACCCATACACTCTGCACTGATAAGGTGCTTTTTCCAACATTCCAGCCGATTATTTTCCCTAAAGATCTCTCCCCCAAGGACTATGTCACCTAAGTCATGCCTTACGGTGTCCGACTGGGGGAAAAGTCCAGTGATTCAAACAGCACTTTTTAAAGATTGTGTAGCTACACTGACTTTGATATACTGATGTCTTGATTGATCGCTGCAGAACTCCCGTTACTGGAAAGAGGTTTTGCTGAAGCTCAAGGTGGGAAGAAAAAATTGCGCTGGCATCCCGTACCACTCCAACAATATCCATTACGGGAAATGCAATCTGCCACACTGTGGCAGTTCTTTTTGAAACTACAGAAGAAGAATAGATGGACACCAGACAAAAGAGAGCAATCAATGGTGACATTATTAGGTTCGGTTAGAACGGTGGAATTGTGTTACCTTTGGATGCAAATGTAAGGACGTCCCACTGACTTCCAACCTTTTGAGGGGCAAATCTCTGACAAAAGAGGATGGGTTGCACGATCAATGCATCTCCTGGGTGAACTCTTCAGATATGAGTTCGGAACAAAGCTGCAGAAAAAAGAACTGCTTAAAATAGGATGCCATTCAGAACGGACTCTTATCAGAAGCGAAATATAGATTTTCAAGCACGTTAAAAGGCCAGAAGAATGCGTCATTATTTCCCTGAAAAGTTGAAACGCCTTTCTTACTTGCGAATGCATGGGAATCGAGGAATATTGCACCAACATGGAATATGCTTAGATCTGAAGCAAACATGTTCTACTCTCTTACTGTAAGTCCCGGTGGTCATATTAAATATGACTGGGTTCAAACTGAGACggactatattttattatgaaaaaatgtagaaaatactGATAGCTTGGCACTTGTTTTATACGGCTATTTTAAAGAGGGAATTATTCAGCAGTTGTAGGATAGATGGATAATAGAGTTTATTTAAGATGTGAGTTCAAACATTGACGGA
>XM_043248996.1
TTTCCAGCACAGCGCAGTAAAGCAGCTGCAGGTCGATCGGTGGAAGTCATTCACAGAAAAGGGATACTGCACAGGAGACCTACGCAAAGCGGAGATTGCGGTTTATGCGTTGCTTTTTACGTACGGCAGAGTTTACTCCAGAGGAAGAACATCAGAAGGCTACAGAAGGATTGCTACCTGTTTCAACAGTCCTGCATCCTCAAAGATGACATGCTCGTGATGCCTCTGTGCATTCCAGAAGCCCATCTTGGCAGCTAGAGGAGAGGAGAGGTCGGCCTCCGTCACCATGACAGTGTTGCCACGGGCCGTGGTCCTGGCTGTGCCCGGCCTTATTCTCTGTTTCATCACTCTTCCATTTCCTGCTACACTATCCCAGAGGCCCCCTCTCCCCACAGAACCCTCCCCCCCAGCACCCCACACAAGGCCGGAGTGTACCCGCCTAGAGCACCCCGTCATCTCTATTCAAGCTCTAAGTCCTTTGATCTCCAGTTTCTCCCATCCTGGTGTAAGGGACTACTCTCAGCTGACCCTTGACCTCACCAGGAATGAACTTATAGTGGGAGCAAGAAACTACCTCTTCAGACtgaatttaaacaacatttcccTAATTCAGgcAGCGGAATGGGGCCCAGGCGAAGAAGACACCAGGAGGTCCTGTCAAAGCAAAGGGAAGACGGAGGTGGAGTGTCAAAACTACATCCGGGTGTTGCTTGTCAACAAGACAGAGGTGATCATCGGTACCAATGCCTTCCAGCCCCTTTGTATCACCAGAGAGGCAGGGAACATGAGCAGAGTTGAGAGGGTGAGCGATGTGGCCCGCCCCTATGACCCCGTCATAATTCGCGACGCTGTAGTGACCGACGGAGAGCTGTATGCTGCCCACGGTCATCGATTTCTCGGCCGGGACCCTGTTATCTACCGCAGCCTAGGAGAATGCACGCCTCTGCGGACCCAGTATAACTCCAAATGGCTTAATGAGCCTCACTTCATCTCGAAGCTTCTGACGTGCGGTCTtttcaccttcttcttcttgaGAAAAGCGCGAGGCGGAACCAGCCTGCGATGGGCGGTGTACTCGAATTGTACCCAGTGTGTAAGGAAGCGACATGGGAGGCAGCTTCTTGCGCTGGAAGACACGTGGACCACCTTCACAACCCGACTCAACATGCAGTCGGGAGAGATCCCATTCTACTACAATGAGCTACAGAGCACCTTCTATCTGCCAGAACAGGATCTCATCTATGGCATCTTCACAACCAACGTAACAGCATTTGCCTCTGCAGTTTGTGCATACAACCTCAAGCGCAATCCGCAGGCTTTCCTTGGGCCTTTCAGCCCAGAACCCAGCTCCACGTGGCTGCCACAAACCCCATCCCTAACTTTGAGTATGGAGACTATTCTTAAGGCCCTGGCAACCACTAATAAGAGCCTGCAAGGTTGCTACTTGGAGGATCTTAACTCTTCCCTCCTGGTTTTAGGAGCCAATCCTGAGCCTTCAGATTCTCCATGGCGACAGGACTACTTTGTGGGCCTGGTgaTGTGTTTAGATGCAAGAGACCATTACTGTGGACAGGACCGAAAGCAGCGGCGTTGCACCACCATACGAGACAACTCTAACATGAGCCAGTGGTTCCAGAACATACTGCCTGTCGGTAAGAACCAGCTGTTTAAAGGAATGGTGTATCACGAGCCCTGGGCTCCATGGCAACCCTGTAGCCATGATGATGGCGAAAACATTAGTACTTGTCTTTGTCGATCAGGCTTGCGATAGTCACGCCCACTGCAGTGCGGAGGTAGAAACTGCTGAGGTCCTACCATTGAAGTGTCCAACTGCTCAAAGGAATGGAGTTGGACACCCTGGTCATCCTGGGGCCAGTGCAGTACAAGTGAGATTGGGTTTGAAGTCCGCCAGCGATCCTGCAGCAATCCTTCTCCCAGGCATGGCGGCAGAGTGTGTGTGGGGACAAAGCAGAAGAACAGATTCTGCAATGAAGGTGTCATGCCCCTCAGCCCATCTTCCTGGTCATCATGGTCGCCCTGGTCCAGAGTGCAGCTCCAAGAGTGTGGAGGAGGTGCCTCTCGCTCCAGGAACTGTGAGAATGGAAATAGCTGTCCAGGATGTGCGGAGTACCAGGCATGTACTGAGTCCTGTCCGGAGGTGCTGTCAAACACTCCCATGGACCCCTTTGGTCCCGTGAACATAACTCCAGGGGGAGGCACGGCAGGAGCAAAGAGCACGCCAGGCATCTGCCGGGCCCTCAACTGGCTGACCTCTCATGAGCTTCAACCAGGCAAGCGCAAGGTGGAGACACGCTCTGCCCCAATGACGGGACGGGTAACCCATAAACAGACTctCGTTGAGGAGCTTCTGAAGACGCCTGGTGTACGCCTGACAGCTGGCTGGTCATCATAAATGTGGTCAGCTTGCACTCAGGAGTGTGCCAAAGGCTACCGGTGACGCAGAACGCACTTCTGCACCAGCGCAGAGGGCAAAAGCTGCCCTGCTGCCTCGGGATCTCCAGTAGAATATCAGGACTGTAACCTCAGGCCCTGTGCAGTTAACGGCGCCTGGTCTTGCTGGTCATCATGGTCGCAGTGTTCAGTGCCCTGTGGAGGTGGGCACTATCAACGAACGCGCACATGCACCAGCCCTACCCCTGCCAATGGAGGGGACATCTGCATCGGCTTGCACACAGAGGAGGCTCTTTGCAACACGCACACCTGTGATGGTGGGTGGATGGCCTGGTCGGTGTGGTCTAAATGTGATGACTCGGGCCTGCAGCTGCGCAGTCGAGTGTGCGGGGCTCAGTCCACACCATGTGTAAACAGCTCCCAGCACCGAGACTGCAATGAGATCCCAGCCATTCTCCCGGCATCTAGCTATGAGAAGGACCAACAGTGTGGGGGGTTCACTCTGCTTCACCTGATAGCTACAGGTGTGTCGTGCTTCCTGGGTGCCGGTCTGCTGTCCTTCCTGGTGTATGTGTACTGTCAGCGTTTCCACAAGCCCTCGCAGGAGTCTGCCGTCATCCATCCCACCACTCCCAACCACCTCAACTACAAGGGCAACACCACACCAAAGAATGAGAAATACACACCCATGGAGTTCAAGACTCTGAATAAGAACAATTTGCTGCCGGATGAGAGGACCAACTACTTCCCATCACCACTTCAGCAGACGAACGTGTACACCACCACGTACTACCCCACAGCACTGGGCAAATATGACTACCGACCAGACTCCTCGCCGTCTCCTTGCAGAACCTATAACCACAGCTGAGACATTTGTCCCATCCGTAGCTTTATTGCCATCTCCTAAAGGCCTCCACTTTCCCCACCCATACACTCTGCACTGATAAGGTGCTTTTTCCAACATTCCAGCCGATTATTTTCCCTAAAGATCTCTCCCCCAAGGACTATGTCACCTAAGTCATGCCTTACGGTGTCCGACTGGGGGAAAAGTCCAGTGATTCAAACAGCACTTTTTAAAGATTGTGTAGCTACACTGACTTTGATATACTGATGTCTTGATTGATCGCTGCAGAACTCCCGTTACTGGAAAGAGGTTTTGCTGAAGCTCAAGGTGGGAAGAAAAAATTGCGCTGGCATCCCGTACCACTCCAACAATATCCATTACGGGAAATGCAATCTGCCACACTGTGGCAGTTCTTTTTGAAACTACAGAAGAAGAATAGATGGACACCAGACAAAAGAGAGCAATCAATGGTGACATTATTAGGTTCGGTTAGAACGGTGGAATTGTGTTACCTTTGGATGCAAATGTAAGGACGTCCCACTGACTTCCAACCTTTTGAGGGGCAAATCTCTGACAAAAGAGGATGGGTTGCACGATCAATGCATCTCCTGGGTGAACTCTTCAGATATGAGTTCGGAACAAAGCTGCAGAAAAAAGAACTGCTTAAAATAGGATGCCATTCAGAACGGACTCTTATCAGAAGCGAAATATAGATTTTCAAGCACGTTAAAAGGCCAGAAGAATGCGTCATTATTTCCCTGAAAAGTTGAAACGCCTTTCTTACTTGCGAATGCATGGGAATCGAGGAATATTGCACCAACATGGAATATGCTTAGATCTGAAGCAAACATGTTCTACTCTCTTACTGTAAGTCCCGGTGGTCATATTAAATATGACTGGGTTCAAACTGAGACggactatattttattatgaaaaaatgtagaaaatactGATAGCTTGGCACTTGTTTTATACGGCTATTTTAAAGAGGGAATTATTCAGCAGTTGTAGGATAGATGGATAATAGAGTTTATTTAAGATGTGAGTTCAAACATTGACGGAGCTATACTgaacatttcatatatt

Function

symbol description
sema5ba Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Acts upstream of or within axonogenesis involved in innervation and sensory perception of touch. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SEMA5B (semaphorin 5B).
sema5b Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to act upstream of or within detection of light stimulus involved in visual perception; neuron projection extension; and neuron projection guidance. Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105535 False 2000 lncRNA 0.46 7 18251260 18366238
TU105536 False 1430 lncRNA 0.44 3 18251260 18264500
XM_043248996.1 True 4342 mRNA 0.51 41 18251236 18366267

Neighbor

gene id symbol gene type direction distance location
hspbap1 LOC107722869,LOC107661136,LOC107660643 coding downstream 45775 18197126 ~ 18205461 (-)
ralba ralba,ralb,LOC107746258,LOC107597482,LOC107596059 coding downstream 212568 18028354 ~ 18038668 (-)
dnajc28 dnajc28,LOC107748188,LOC107673653,LOC107597584,LOC107756751,LOC107656783,LOC107569146 coding downstream 599115 17649975 ~ 17652121 (-)
zp2l1 NA coding downstream 676862 17559528 ~ 17574374 (-)
appb appb,LOC107597486,LOC107748127,LOC107595805,LOC107756757,LOC107695460,LOC108426075 coding downstream 935418 17299245 ~ 17315818 (-)
adcy5 adcy5,LOC107555914,LOC107661140,LOC107660638,LOC107596066,LOC107714401 coding upstream 60805 18427072 ~ 18492873 (-)
hacd2 hacd2,LOC107660639,LOC107741899,LOC107661144 coding upstream 127819 18494086 ~ 18499894 (-)
si:dkey-219c10.4 LOC107741933,LOC108266238,LOC106586425,LOC102795313,LOC101468032,LOC107673728,LOC107660664,LOC107555910 coding upstream 168385 18534652 ~ 18545151 (-)
ccdc93 ccdc93,LOC107741907,LOC107555923,LOC107596073,LOC107714249 coding upstream 260150 18626417 ~ 18633604 (-)
znf142 LOC107741908,LOC107555924,LOC107660628,LOC107714222,LOC107596070,LOC107673749 coding upstream 276203 18642470 ~ 18649055 (-)
G71293 NA non-coding downstream 24449 18222314 ~ 18226787 (-)
LOC122352098 NA non-coding downstream 515317 17733203 ~ 17735919 (-)
G71194 NA non-coding downstream 558416 17665519 ~ 17692820 (-)
G71190 NA non-coding downstream 589791 17661216 ~ 17661445 (-)
G71175 NA non-coding downstream 605316 17644438 ~ 17645920 (-)
G71339 NA non-coding upstream 142173 18508440 ~ 18510009 (-)
G71341 NA non-coding upstream 144906 18511173 ~ 18511528 (-)
G71389 NA non-coding upstream 242560 18608827 ~ 18697031 (-)
G71400 LOC107555927,LOC107660626,LOC107741910,LOC107660658,LOC107660625,LOC107578255,LOC107714212 non-coding upstream 287360 18653627 ~ 18654751 (-)
G71424 NA non-coding upstream 322231 18688498 ~ 18692089 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other downstream 729676 17364187 ~ 17521560 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other downstream 995745 17235872 ~ 17255491 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other downstream 1361689 16886753 ~ 16889547 (-)
G70986 pou2f1b,LOC107748141 other downstream 1427461 16817140 ~ 16823775 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other downstream 1505014 16720804 ~ 16746222 (-)
LOC122352185 NA other upstream 203488 18569755 ~ 18569882 (-)
ankar ankar,LOC107728908,LOC107660654 other upstream 1353675 19719942 ~ 19731794 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other upstream 1429985 19796252 ~ 19829475 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other upstream 1467653 19833920 ~ 19852625 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other upstream 1515283 19881550 ~ 19893315 (-)

Expression


Co-expression Network