cps1 (cps1,LOC107660611,LOC107741925)


Basic Information

Item Value
gene id cps1
gene name cps1,LOC107660611,LOC107741925
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18896602 ~ 18931462 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU105802
TGCTAATAAAGAGAAGCTAGAGGACACTGCTTGCAAGTTAAGATCAGAAGGCTAAGGCCTTGGCCATGAGCAGCCAGATCCTGGTGGAGAAGTCCCTGCTGGGCTGGAAGGAAGTGGAATATGAGGTGGTTAGAGATGTTGCTGATAACTGTGTCACTGTCTGCAATATGGAGAACTTTGACCCTCTGGGCATCCACACTGGTGACTCCATCGTGGTTGCACCCAGCCAGACTCTGTCCAATGAGGAATACCACATGCTGAGAGAGACCGCTATTAAAGTAGTGCGTCATCTGGGCATTGTGGGAGAGTGCAACATCCAGTATGCCCTGCATCCGTCCTCTCTGGAGTACTGTATCATTGAGGTGAACGCTCGCCTCTCCAGAAGCTCAGCACTGGCTTCCAAAGCCACAGGGTATCCGCTAGCATTTGTAGCTGCTAAACTAGCACTTGGCATCCCATTGCCGGACATAAAGAATGCAGTGTCAGAGCAGACCACGGCCTGTTTTGAGCCCAGTTTGGATTATATTGTCACCAAAATACCTCGCTGGGATCTGGACCGTTTCCACGGGATGTCTCGGGAGATCGGCAGTGCCATGAAGAGTGTTGGAGAGGTCATGGCAGTTGGCCGAACCTTTGAGGAGAGCATACAGAAGGCTTTGCGTATGTGCCACCCCTCAGTGGACGGCTTTGTACCGCATCTGCCTCTAAAAAGAGCCTGGGCAGAGCAAAGAGACCTTCAACGAGAGCTCTCCCTGCCTTCAAGTACTCGTATCTTCTCCCTCTCCCAGGCCCTTCACAGTGGTGTGACT
>TU105807
AGTGGCTCAGCCATGAATGTGGCATACGGTGAAGATGAGATGAAGCGTTTCCTGGAGGAAGCCACGCAGGTGTCACAGGATCATCCTGTGGTCATCACTAAATTCGTTCGCGGTGCCAGAGAAGTGGAGGTAGATGCAGTGGCTAGAATGGGCAAGGTTCTGGCTCATGCTGTCACAGAGCATGTGGAGGATGCAGGAGTGCACTCAGGAGACGCCACTCTCATGCTGCCCACCCAGACCATCAGTCAGGGAGCTCTAGAGAAGGT
>XM_043248997.1
ATGGCGCAACTGGAAGACATCGAAGAGGCTGTTCAACATGAAGataatCTCCAGGCTCAGACCGCGCATTTGGTGCTTGAAGATGGCACGAAGATGAAGGGCTACTCTTTTGGCCATGGTCACTCTGCAGCTGGAGAGCTGGTCTTCAACACCGGACTAGTTGGCTATCCTGAGGCTCTGACAGACCCCAGTTACCGAGGGCAGATCCTGACGCTCACCTACCCCATTGTTGGAAACTACGGTGTTCCCAATACACAGCAACTGGATGAGCTGGGACTGAAGAAAAATGTGGAGTCTGATCGCATTCAGGTGTCAGGACTGTTGGTTCAGGACTACAGTACTGAATACAGTCACTGGAACTCTGTCAAATCACTAGCACAGTGGCTTCAAGAGGAGAAGGTGCCGGCTCTTTTTGGGATAGATACCAGGATGCTAACAAAGATTATCAGAGACAAGGGTACCGTTTTGGGAAAAATTGAATTTGACGGACAGCCAGTGGAGATCACAGACCCAAACCAGAGAAATCTTGTAGCAGAGGTCTCAACCAAGGATGTTCAGGTGTTTGGGAAAGGCAATCCTATTAAAGTGGTTGCTGTTGATTGTGGAATCAAGCACAACATTATAAGACTACTTGTCAAGcGTGGAGCAGAAGTGCATTTAGTGCCATGGGACCAAGACCTGATGAATCTGGAGTATGACGGTCTTTTCATCTCCAACGGTCCAGGAGATCCTTCACTGGCAAAGAACCTTATTCGAAATGTCCGCCAGGTGCTGGAAAGTGACCGTCCTCAGCCAGTGTTTGGCATTTGTATGGGAAATCAAATCACAGCGCTGGCAGCTGGTGCACAGTCTTATAAACTACCAATGGGAAACAGAGGCCAAAACCAGCCAGTTGTGAACGTGATGACGGGCCAAGCTTTCATCACAGCTCAGAATCACGGGTATGGCATAGACAGTGGGTCCCTTCCTCCAGGCTGGAGTCCTCTCTTCATCAATGCAAATGATGAAACCAATGAGGGCATTATGCATAATACCAAGCCGGTTTTCACAGCTCAGTTCCACCCCGAGGCCAAAGGAGGACCCACAGACACAGAGTTCCTGTTTGATGCTTTCATCTCTCTGATAAGGAATGGGAAGGAGGGGAGCATTGCATCTGTGATGCCAAAGAAACCTGCTGTTCCTCAGAGAATCCAGGTGTCTAAAGTGCTGGTGCTGGGATCTGGGGGTCTGTCCATCGGTCAGGCGGGAGAGTTTGACTACTCGGGATCCCAGGCTGTCAAAGCTATGAAAGAGGAAAACCTACAAACTGTGCTGATTAACCCCAACATTGCCTCGGTACAGACTAACGAGGATGGCACCAAGCAGGCAGACTCTGTGTATTTCCTGCCCATCACTCCTGAGTTTGTAACGGAGGTGATCAAAGTAGAGCGACCTGACGGCATCCTGCTCTCCATGGGAGGACAGACAGCTCTCAATTGCGGGGTGGAGCTCTTTCAGAGTGGCGTCCTGCAAAAGTATGGAGTGCAAGTTTTGGGCACACCTGTGGACTCCATCATGGCCACTGAGGACCGGCAACTCTTTTCGGATAAACTAATGGAGATCAATGAAAAGATTGCTCCTAGTATTGCTGTTAAAACGGTGGCAGATGCTTTGAAGGCAGCAGATGATATTGGGTACCCTGTCATGTTGAGATCAGCTTATGCCCTGGGTGGCCTTGGCTCAGGCCTGTGTGCTAATAAAGAGAAGCTAGAGGACACTGCTTGCAAGGCCTTGGCCATGAGCAGCCAGATCCTGGTGGAGAAGTCCCTGCTGGGCTGGAAGGAAGTGGAATATGAGGTGGTTAGAGATGTTGCTGATAACTGTGTCACTGTCTGCAATATGGAGAACTTTGACCCTCTGGGCATCCACACTGGTGACTCCATCGTGGTTGCACCCAGCCAGACTCTGTCCAATGAGGAATACCACATGCTGAGAGAGACCGCTATTAAAGTAGTGCGTCATCTGGGCATTGTGGGAGAGTGCAACATCCAGTATGCCCTGCATCCGTCCTCTCTGGAGTACTGTATCATTGAGGTGAACGCTCGCCTCTCCAGAAGCTCAGCACTGGCTTCCAAAGCCACAGGGTATCCGCTAGCATTTGTAGCTGCTAAACTAGCACTTGGCATCCCATTGCCGGACATAAAGAATGCAGTGTCAGAGCAGACCACGGCCTGTTTTGAGCCCAGTTTGGATTATATTGTCACCAAAATACCTCGCTGGGATCTGGACCGTTTCCACGGGATGTCTCGGGAGATCGGCAGTGCCATGAAGAGTGTTGGAGAGGTCATGGCAGTTGGCCGAACCTTTGAGGAGAGCATACAGAAGGCTTTGCGTATGTGCCACCCCTCAGTGGACGGCTTTGTACCGCATCTGCCTCTAAAAAGAGCCTGGGCAGAGCAAAGAGACCTTCAACGAGAGCTCTCCCTGCCTTCAAGTACTCGTATCTTCTCCCTCTCCCAGGCCCTTCACAGTGGTGTGACTGTTGATCAAATCCATGACCTCACTGCCATAGACAAATGGTTCCTGCACAAACTGAAGCACATTACTATGATGGAGCAGCTCCTGGGTCAGTATAACAGTGCCACTGTGCCGAGAAATCTACTTCTGAAGGCCAAGATGGATGGTTTCTCAGACCGACAGGTTGGCCAGGCTCTGAACATCTCAGAGGAAGAATCTCGGGTGCTCAGGCTCAACCAGAACATAAGACCTTGGGTCAAACAGATTGACACACTTGCTGCTGAATACCCTGCAGCCACCAATTATTTGTATTGCACTTACCATGGTCAGGAGCATGACTTGGATTTTAAGGATCATGGTATCATGATTGTGGGTTGTGGTCCGTATCACATTGGCAGCAGTGTGGAGTTTGACTGGTGTGCGGTGTCAAGCATTCGTGCCCTTAGACAGATGGGCAAGCGTACAGTGGTGGTGAACCATAACCCAGAGACGGTCAGTACGGACTTTGATGAGTGTGACCGTCTGTACTTTGAGGAGTTAACCCTGGAGCGCATCCTGGACATCACACAGCAGGAGGGCTGCACCGGCTGTATAGTATCTGTGGGTGGACAGATCCCCAATAACCTGGCCATGCCCCTGCACCTGAACGGGGTGAAGATTCTGGGAACCAGTCCTCTTCAGATCGATCGTGCGGAAGAGAGATCTGTATTCTCCTCTATACTGGATGATCTGGGTGTAGGCCAGGCCCCGTGGAGGGCTCTCAGCTCACTGgaAGATGCGGTTTCTTTTGCCAGTAATGTGGGCTACCCTTGCCTCCTGCGGCCATCCTATGTTCTGAGTGGCTCAGCCATGAATGTGGCATACGGTGAAGATGAGATGAAGCGTTTCCTGGAGGAAGCCACGCAGGTGTCACAGGATCATCCTGTGGTCATCACTAAATTCGTTCGCGGTGCCAGAGAAGTGGAGGTAGATGCAGTGGCTAGAATGGGCAAGGTTCTGGCTCATGCTGTCACAGAGCATGTGGAGGATGCAGGAGTGCACTCAGGAGACGCCACTCTCATGCTGCCCACCCAGACCATCAGTCAGGGAGCTCTAGAGAAGGTCTCtactgctacACAGAAAATTGCTAAGGCGTTTGAGATTTCAGGGCCGTTTAACACTCAATTTTTGGTGAAGGGAAACGATGTAATGGTGATCGAATGTAACCTGCGCGCATCTCGATCGTTCCCCTTCGTCTCTAAAACTATCGGTGTGGACTTCATCGACGTGGCTACCAGGGTCATGGTGGGAGAACCCCTGGACGAGTCGCGTCTGCCCTCCCTAGAAAACCCAATCATTCCAGTCGACTACGTTGGCATTAAGGCTCCTATGTTTTCCTGGCCTCGCCTGAGAGAAGCTGACCCTGTCCTGCGTTGTGAGATGGCTTCCACTGGAGAGGTGGCTTGCTTTGGACCAAACATCTACTCTGCCTTCCTGAAGGCCATGCTCTCTACGGGATTCAAGCTTCCCCAGAAGGGGATTCTCATTGGGATACAACATTCATTCAGGCCTAACTTCCTGTCCACTGCTCATCAGCTTCATGAGGAGGGCTTTAAGCTCTATGCCACAGAGGGTACATCAGCTTGGCTCAATGCTAATGATGTTCCAACAATCCCTGTTGCTTGGCCGAGCCATGAAACCAAAAATACAACCTTACCCAGAATCAACAGACTCATCAGTGAAGGACACATTGACCTTGTGGTCAACTTGCCTAATAACAACACCAAGTTTCTTAAGGACAACTTTCAGATTCGCAGGATGGCAGTGGATTACGGAGTACCACTTGTAACAAACTTCCAGGTTGTAAAGCTGTTTGCCGAAGCCATCAGGTATTCCAGCGATTTAGACGTCACCAGTTTGTTCCACTACCGCCAACGTGAGCCCAGACTGTCGAAGAGCTCTGCTGCATGGTTAACACGTAACCTCTAAAACAGGACAAAAGTTTGCCAGGTGGTGTTATCTGTTGGGGGGGCAACTGAACAGTTACAATTGGTTTACAGTCATACATCTAACTAG

Function

symbol description
cps1 Enables carbamoyl-phosphate synthase (ammonia) activity. Acts upstream of or within ammonium homeostasis and urea cycle. Predicted to be active in cytoplasm. Is expressed in ball; brain; liver; and muscle. Human ortholog(s) of this gene implicated in carbamoyl phosphate synthetase I deficiency disease; persistent fetal circulation syndrome; and vascular disease. Orthologous to human CPS1 (carbamoyl-phosphate synthase 1).

NR:

description
carbamoyl-phosphate synthase [ammonia], mitochondrial

GO:

id name namespace
GO:0070409 carbamoyl phosphate biosynthetic process biological_process
GO:0006543 glutamine catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01948 CPS1; carbamoyl-phosphate synthase (ammonia)

RNA

RNA id representative length rna type GC content exon number start site end site
TU105802 False 809 TUCP 0.52 7 18901629 18907047
TU105807 False 266 TUCP 0.55 3 18917570 18920415
XM_043248997.1 True 4551 mRNA 0.50 38 18896602 18931462

Neighbor

gene id symbol gene type direction distance location
map2 map2,LOC107673740,LOC107555937,LOC107741924,LOC107660616,LOC107596094 coding upstream 12277 18793081 ~ 18884325 (+)
kansl1l LOC107741922,LOC107660662,LOC107555936,LOC107596092 coding upstream 105236 18773760 ~ 18791366 (+)
heg1 LOC107555935,LOC107741920,LOC107660617,LOC107673741 coding upstream 124863 18760460 ~ 18771739 (+)
slc12a8 slc12a8,LOC107741923,LOC107660618,LOC107673744,LOC107714115,LOC107555904 coding upstream 136336 18742810 ~ 18760266 (+)
znf148 znf148,LOC107673743,LOC107660621 coding upstream 156546 18734419 ~ 18740056 (+)
hibch hibch,LOC107660603,LOC107714371,LOC107741945 coding downstream 711587 19643049 ~ 19666613 (+)
mstnb LOC107728928,LOC107602146,LOC107660602,LOC107657539 coding downstream 741798 19673260 ~ 19676836 (+)
osgepl1 osgepl1,LOC107660598 coding downstream 785800 19717262 ~ 19720435 (+)
zgc:136439 zgc:136439,LOC107660597,LOC107602150,LOC107728935 coding downstream 800893 19732355 ~ 19733971 (+)
slc40a1 slc40a1,LOC107660595,LOC107602151 coding downstream 810178 19741640 ~ 19748311 (+)
LOC122351431 NA non-coding upstream 2633 18889923 ~ 18893969 (+)
G71442 LOC103022703,LOC103363874,LOC107673729,LOC107721018,LOC107596080,LOC107660614,LOC107555938 non-coding upstream 4550 18747911 ~ 18892052 (+)
G71334 NA non-coding upstream 352604 18543774 ~ 18543998 (+)
G71333 NA non-coding upstream 355266 18540883 ~ 18541336 (+)
G71331 NA non-coding upstream 357902 18538480 ~ 18538700 (+)
G71457 LOC107662043,LOC107555909,LOC107741926,LOC107556197,LOC107660610,LOC107721020 non-coding downstream 48851 18980313 ~ 18985811 (+)
G71509 NA non-coding downstream 319377 19250839 ~ 19251157 (+)
G71517 NA non-coding downstream 324568 19256030 ~ 19256233 (+)
G71581 LOC107741931,LOC107602131,LOC107660608,LOC107714367,LOC107657499,LOC107565025 non-coding downstream 675523 19606985 ~ 19607201 (+)
G71583 LOC107741931,LOC107660608,LOC107602131 non-coding downstream 684232 19615694 ~ 19620476 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other upstream 207060 18682672 ~ 18689542 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other upstream 254116 18635106 ~ 18642486 (+)
tfcp2l1 tfcp2l1,LOC107673739,LOC107714264,LOC107596086 other upstream 277215 18611995 ~ 18619387 (+)
clasp1a clasp1a,LOC107741904,LOC107555920,LOC107660633,LOC107673735,LOC107714287 other upstream 285674 18549936 ~ 18610928 (+)
lrp1bb lrp1b,LOC107661145,LOC107660661,LOC107746259,LOC107714450 other upstream 932358 17736006 ~ 17964244 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other downstream 581392 19512854 ~ 19543677 (+)
G71585 NA other downstream 689822 19621284 ~ 19621493 (+)
ormdl1 ormdl1,LOC107602148 other downstream 777902 19709364 ~ 19714404 (+)
si:dkey-10c21.1 NA other downstream 1281933 20213395 ~ 20218120 (+)
gulp1a gulp1,gulp1a,LOC106581930,LOC107584160,LOC107717010,LOC107657514,LOC107562715,LOC107699007,LOC107714392 other downstream 1417365 20348827 ~ 20362462 (+)

Expression


Co-expression Network