LOC122351248


Basic Information

Item Value
gene id LOC122351248
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18911843 ~ 18972902 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU105862
GTCCGTTCTCGCTGTTTGTTCCGATAGCGTCGTATATCGTATtttgttgcttattattttttcgTTCCCTTTTCCCTCATGCTGTAAATCATCACGCCTTTTGTGTTAGAAGAGAAGTGGACAGGTGCGGAAAGAAGAAAAGGCCGTGAAAGTGTCTTTGCAGAATGGCTGCGCCCTTGGAGAATTGCTGTCTGAAATGACAAACTTTCAGCGACTGGTTGAGCCAACAAGTGTTCCAGACACTCATAGAAATGCCAATCCATCCAAAGGAATGAGCTGTGGTCCCAGGAGCTGACTCTGGAACATGACACGGCATTATTTTACGCTCTGAGAGCTGTTATATACCTTCTGATCCCATTAATCACATTCCGATGGCAaccacatgcattcatacactgTTCCCTCCAGGTTTATCAGAGCAAGCTAACGTGATGGTAATAAACCGCTACACAGCACCTGGGAATTTATTACAACCTCTGAGCATAACAACAAACACTTGATCAACCCATGCTTTAATCACCACTTTAACTAGCTTATAATGTGTCTGAATGGAAAAGTCAATGGCTGTTAGAGAGGTCAGGTTTTGCATCATCAGTGAAGACTTTAGTGGCTCCATCTCTATA
>XR_006251715.1
GTCCGTTCTCGCTGTTTGTTCCGATAGCGTCGTATATCGTATtttgttgcttattattttttcgTTCCCTTTTCCCTCATGCTGTAAATCATCACGCCTTTTGTGTTAGAAGAGAAGTGGACAGGTGCGGAAAGAAGAAAAGGCCGTGAAAGTGTCTTTGCAGAATGGCTGCGCCCTTGGAGAATTGCTGTCTGAAATGACAAACTTTCAGCGACTGGTTGAGCCAACAAGTGTTCCAGACACTCATAGAAATGCCAATCCATCCAAAGGTTGGGAATATGAATTACCTGACTGGCAGTAGTCGTTCTGCTTGGCTGACAGCTGTCATGAACACACgggatggatggagagagacagagagggatgAGTCTGTCAGTTCCCCTCCCTCACTCCCTCCCCTCCTTCTCTCGAGGCATTTCACTCCTTTAAGCAGTTGTATAATGAAGAGCTTGCGGTCCTTCCCGTTTAACACAGGGCACTGGAGCAGGCATTGTGGGCCACTGAGTTTCTCACTCTTTTGCAGACCATCTACTTTGAAACTGTATTTCACCTCTAGCCAGACAACTGTAGGGAAGGCACTTTAGGTTAATTCCCCCAAATCACTGGGTCTCTGTGGTTATGTCAACACATTACTGTTTGAGACAGACATATCAGAGTTAAATCAACAAGTGGTGTTAGTTTGGGACAGAAGGTTTGTCTGAAAGATGTTGGAAAcatgtttgaaataataattttttgcaaTTGCATTTGATTACACTGTGGGAAGTATATGGGTGTGGGTAGTGTTTGGATGCTTAGTAGGGTCCAGTGAGCCTATTTGTTGGATTGTTCTCAAAGGgatcacaaaaatgaaaattgtcactACTTACCTCATTTTGTTCCAAGTTCAAGTCTCTCTTgattctgtggaacataaaataaGGTACTTAGAAATCTTTTTAACAGCActataaaaacagacatttttcaatttcaaataaatgctgcttcttTGAACTTTCTGGTCATCATAGAATGGTGATCATGGTTTTCACCAAAATACTAAACAGCACGACTGTTAAGAGTAAGTAAATACTTCCTGCGCACACAATCAGTGTATTAGA
>XR_006251716.1
GTCCGTTCTCGCTGTTTGTTCCGATAGCGTCGTATATCGTATtttgttgcttattattttttcgTTCCCTTTTCCCTCATGCTGTAAATCATCACGCCTTTTGTGTTAGAAGAGAAGTGGACAGGTGCGGAAAGAAGAAAAGGCCGTGAAAGTGTCTTTGCAGAATGGCTGCGCCCTTGGAGAATTGCTGTCTGAAATGACAAACTTTCAGCGACTGGTTGAGCCAACAAGTGTTCCAGACACTCATAGAAATGCCAATCCATCCAAAGGAGTCCGGAAGATCGGCACTGGCAACATGCTTGTGACATGTGACGGACAGGAGGGGGTTTTCACTGCACATCCCAGTGCCAGGAACATGTGCCAGGCAGAGGACGGCAGGCAGCACCGCTTATGCCAAACTGTCTCTCCACGAACAAGGTTGGGAATATGAATTACCTGACTGGCAGTAGTCGTTCTGCTTGGCTGACAGCTGTCATGAACACACgggatggatggagagagacagagagggatgAGTCTGTCAGTTCCCCTCCCTCACTCCCTCCCCTCCTTCTCTCGAGGCATTTCACTCCTTTAAGCAGTTGTATAATGAAGAGCTTGCGGTCCTTCCCGTTTAACACAGGGCACTGGAGCAGGCATTGTGGGCCACTGAGTTTCTCACTCTTTTGCAGACCATCTACTTTGAAACTGTATTTCACCTCTAGCCAGACAACTGTAGGGAAGGCACTTTAGGTTAATTCCCCCAAATCACTGGGTCTCTGTGGTTATGTCAACACATTACTGTTTGAGACAGACATATCAGAGTTAAATCAACAAGTGGTGTTAGTTTGGGACAGAAGGTTTGTCTGAAAGATGTTGGAAAcatgtttgaaataataattttttgcaaTTGCATTTGATTACACTGTGGGAAGTATATGGGTGTGGGTAGTGTTTGGATGCTTAGTAGGGTCCAGTGAGCCTATTTGTTGGATTGTTCTCAAAGGgatcacaaaaatgaaaattgtcactACTTACCTCATTTTGTTCCAAGTTCAAGTCTCTCTTgattctgtggaacataaaataaGGTACTTAGAAATCTTTTTAACAGCActataaaaacagacatttttcaatttcaaataaatgctgcttcttTGAACTTTCTGGTCATCATAGAATGGTGATCATGGTTTTCACCAAAATACTAAACAGCACGACTGTTAAGAGTAAGTAAATACTTCCTGCGCACACAATCAGTGTATTAGA

Function

GO:

id name namespace
GO:0046332 SMAD binding molecular_function
GO:0070412 R-SMAD binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105862 False 623 lncRNA 0.43 3 18911843 18972902
XR_006251715.1 False 1103 lncRNA 0.42 3 18941516 18972902
XR_006251716.1 True 1251 lncRNA 0.44 4 18941516 18972902

Neighbor

gene id symbol gene type direction distance location
myl1 myl1,LOC107721018,LOC107673729,LOC107596080,LOC107660614,LOC107555938 coding downstream 21788 18885444 ~ 18890055 (-)
tgfbr2l si:dkey-101k6.5,LOC107660622,LOC107741917,LOC107555932,LOC107714146,LOC107673748,LOC107596078 coding downstream 191396 18709228 ~ 18720447 (-)
znf142 LOC107741908,LOC107555924,LOC107660628,LOC107714222,LOC107596070,LOC107673749 coding downstream 262788 18642470 ~ 18649055 (-)
ccdc93 ccdc93,LOC107741907,LOC107555923,LOC107596073,LOC107714249 coding downstream 278239 18626417 ~ 18633604 (-)
si:dkey-219c10.4 LOC107741933,LOC108266238,LOC106586425,LOC102795313,LOC101468032,LOC107673728,LOC107660664,LOC107555910 coding downstream 366692 18534652 ~ 18545151 (-)
LOC122351886 erbb4,LOC107741926,LOC107660610,LOC107721020,LOC107662043,LOC107555909 coding upstream 7376 18980278 ~ 19249175 (-)
ikzf2 si:zfos-1425h8.1,LOC107741927,LOC107660609,LOC107662042,LOC107721023,LOC107556196,LOC107568511 coding upstream 286827 19259729 ~ 19285223 (-)
bard1 LOC107741928,LOC107660605,LOC107602130 coding upstream 573322 19546224 ~ 19568760 (-)
abca12 LOC107657499,LOC107714367,LOC107602131,LOC107660608,LOC107741931,LOC107565025 coding upstream 596266 19569168 ~ 19634801 (-)
pofut2 LOC107741944,LOC107660604,LOC107714363,LOC107657505,LOC107565035 coding upstream 663549 19636451 ~ 19642933 (-)
G71471 znf148,LOC107673743,LOC107660621 non-coding downstream 169618 18737756 ~ 18742225 (-)
G71389 NA non-coding downstream 214812 18608827 ~ 18697031 (-)
G71424 NA non-coding downstream 219754 18688498 ~ 18692089 (-)
G71400 LOC107555927,LOC107660626,LOC107741910,LOC107660658,LOC107660625,LOC107578255,LOC107714212 non-coding downstream 257092 18653627 ~ 18654751 (-)
G71341 NA non-coding downstream 400315 18511173 ~ 18511528 (-)
LOC122351981 NA non-coding upstream 278735 19251637 ~ 19254248 (-)
LOC122351235 NA non-coding upstream 470543 19443445 ~ 19459100 (-)
G71587 NA non-coding upstream 485885 19458787 ~ 19543847 (-)
LOC122351387 NA non-coding upstream 524010 19496912 ~ 19508085 (-)
LOC122351304 NA non-coding upstream 546838 19519740 ~ 19525590 (-)
LOC122352185 NA other downstream 341961 18569755 ~ 18569882 (-)
sema5ba sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063 other downstream 545576 18251236 ~ 18366267 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other downstream 1390283 17364187 ~ 17521560 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other downstream 1656352 17235872 ~ 17255491 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other downstream 2022296 16886753 ~ 16889547 (-)
ankar ankar,LOC107728908,LOC107660654 other upstream 747040 19719942 ~ 19731794 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other upstream 823350 19796252 ~ 19829475 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other upstream 861018 19833920 ~ 19852625 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other upstream 908648 19881550 ~ 19893315 (-)
G71938 nab1,LOC107565022 other upstream 1516262 20489164 ~ 20503890 (-)

Expression


Co-expression Network