ormdl1 (ormdl1,LOC107602148)


Basic Information

Item Value
gene id ormdl1
gene name ormdl1,LOC107602148
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19709364 ~ 19714404 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU106041
GTTTGCAGTGAGTCAGCCCGCAGTGCGCGCAGCGGAGGCCGGCAGCGCTCCAGCCTGCTTCACCCGAACGCAAACAAGaAAAGCAAGATGAACGTCGGTGTGGCCCACAGTGAAGTAAACCCAAACACCCGTGTGATGAACAGTCGAGGGATATGGCTGACATACGCGCTCGGCGTAGGAATGCTTCACATCGTACTGTTGAGCATTCCTTTCTTCAGTGTTCCTGTTGTGTGGACCCTCACAAATGTTATTCACAATTTTggtatgtatgtatttatgcatgcagTGAAAGGCACGCCATTTGAAACACCAGACCAGGGCAAGGCAAGACTTCTCACACACTGGGAACAGCTGGACTACGGCGTACAGTTCACGTCATCTAGAAAATTCTTTACAATCTCACCAATCATTttGTATTTTCTCGCCAGCTTTTACACAAAATACGACACAGCTCATTTTGTGATAAACACAGCTTCTCTTTTGAGTGTCCTCATCCCAAAACTGCCACAACTCCATGGAGTCAGGATCTTTGGAATAAACAAGTATTAAGCCCAGTGTTCAGAGGGCACAGACCAACTCCGATCTGTTGCCTGATGTGGGAGAGGAGATAACCCTTTGTACTTTGTACCGCAGTTGTGTACACTTAGCAGTTTTGTACAGTCTGTGTAATTGTGAGTCTCTTTGTTTGATATATCTTGAGAAATTGTTGTAGGGACATGTTAAGAGGACAATTCCACAAGCATTAATAACTTAagatatttaatgtgttttcgTTAGTTGTTTTGTGATCCTCGTGGATCTGGGCTGGCCCAGGtttcatggttttttttttttttttttgttaattaattatttttttgttgttgttgttttagtttttttttttcgttcatatagtttttgtttgttcaaatgTGCTCACAACACTGATACACTAAGATAGTTTTATGCTTTTAGTGTCACTTCACATTTCTAAATGCATTCTTAGATAATTCCATGAAttgacaaaatgtgttttaaaaataatttaaaagccaTGAAACCTTTCTGCTGTTTCGTTAATGTTATCATTGCTTTAGagacaacaaataaaaagtcaGTTTGCATGATTtcctgaaaaaatatttgttcatcTCAGTACGCCGtagttttgtttagttaatGTCTTACAGCTAAtaaatgacaaagaaaaaaaatagcattaacaACATTTAGCCTTTTAAGTAATTTCAGTagagtcaacatgaaatcaaaaatagaactttcttattctttttaCATGTTTCTGGTctcattttgaacattttatctGTGCACGACATTTTCGTGTAAATTTTGAACGGCTTCCTCTGCCCCCGAAACAAAACATCAAGTTCTTCCCTAAATGTTTGAATCagaatatttcatgttgacttttaGCTCAATATCagtatgtcattttaaatctcTGGATCATTACCAAGCTTCAGCAAACCATCATGTTTCTTTGCTCTTTTCTGTCACAGTATTATTGAAGTTGAGAAACTGTAACATAAACCCATTAACTATTTGTATTCTTCCACTTTCTTGTCTTTTGACAATATTTGCAAAGGCTCGACTGTGCCAATTGTTTTGTCCTTTTGTTTTGAGAAAAGGTATGAACGTAGGATGTTGTGTGTTGTATGACATgctgcaaacaaataaaactttacaaag
>XM_043249433.1
TAGCCTTTGTGCTAGCGGAGTGTTTGCAGTGAGTCAGCCCGCAGTGCGCGCAGCGGAGGCCGGCAGCGCTCCAGCCTGCTTCACCCGAACGCAAACAAGaAAAGCAAGATGAACGTCGGTGTGGCCCACAGTGAAGTAAACCCAAACACCCGTGTGATGAACAGTCGAGGGATATGGCTGACATACGCGCTCGGCGTAGGAATGCTTCACATCGTACTGTTGAGCATTCCTTTCTTCAGTGTTCCTGTTGTGTGGACCCTCACAAATGTTATTCACAATTTTggtatgtatgtatttatgcatgcagTGAAAGGCACGCCATTTGAAACACCAGACCAGGGCAAGGCAAGACTTCTCACACACTGGGAACAGCTGGACTACGGCGTACAGTTCACGTCATCTAGAAAATTCTTTACAATCTCACCAATCATTttGTATTTTCTCGCCAGCTTTTACACAAAATACGACACAGCTCATTTTGTGATAAACACAGCTTCTCTTTTGAGTGTCCTCATCCCAAAACTGCCACAACTCCATGGAGTCAGGATCTTTGGAATAAACAAGTATTAAGCCCAGTGTTCAGAGGGCACAGACCAACTCCGATCTGTTGCCTGATGTGGGAGAGGAGATAACCCTTTGTACTTTGTACCGCAGTTGTGTACACTTAGCAGTTTTGTACAGTCTGTGTAATTGTGAGTCTCTTTGTTTGATATATCTTGAGAAATTGTTGTAGGGACATGTTAAGAGGACAATTCCACAAGCATTAATAACTTAagatatttaatgtgttttcgTTAGTTGTTTTGTGATCCTCGTGGATCTGGGCTGGCCCAGGtttcatggttttttttttttttttttgttaattaattatttttttgttgttgttgttttagtttttttttttcgttcatatagtttttgtttgttcaaatgTGCTCACAACACTGATACACTAAGATAGTTTTATGCTTTTAGTGTCACTTCACATTTCTAAATGCATTCTTAGATAATTCCATGAAttgacaaaatgtgttttaaaaataatttaaaagccaTGAAACCTTTCTGCTGTTTCGTTAATGTTATCATTGCTTTAGagacaacaaataaaaagtcaGTTTGCATGATTtcctgaaaaaatatttgttcatcTCAGTACGCCGtagttttgtttagttaatGTCTTACAGCTAAtaaatgacaaagaaaaaaaatagcattaacaACATTTAGCCTTTTAAGTAATTTCAGTagagtcaacatgaaatcaaaaatagaactttcttattctttttaCATGTTTCTGGTctcattttgaacattttatctGTGCACGACATTTTCGTGTAAATTTTGAACGGCTTCCTCTGCCCCCGAAACAAAACATCAAGTTCTTCCCTAAATGTTTGAATCagaatatttcatgttgacttttaGCTCAATATCagtatgtcattttaaatctcTGGATCATTACCAAGCTTCAGCAAACCATCATGTTTCTTTGCTCTTTTCTGTCACAGTATTATTGAAGTTGAGAAACTGTAACATAAACCCATTAACTATTTGTATTCTTCCACTTTCTTGTCTTTTGACAATATTTGCAAAGGCTCGACTGTGCCAATTGTTTTGTCCTTTTGTTTTGAGAAAAGGTATGAACGTAGGATGTTGTGTGTTGTATGACATgctgcaaacaaataaaactttacaaagTA

Function

symbol description
ormdl1 Predicted to be involved in cellular sphingolipid homeostasis; ceramide metabolic process; and negative regulation of ceramide biosynthetic process. Predicted to act upstream of or within negative regulation of sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of SPOTS complex. Orthologous to human ORMDL1 (ORMDL sphingolipid biosynthesis regulator 1).

NR:

description
hypothetical protein cypCar_00042736, partial

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106041 False 1695 TUCP 0.37 4 19709385 19714402
XM_043249433.1 True 1718 mRNA 0.37 4 19709364 19714404

Neighbor

gene id symbol gene type direction distance location
mstnb LOC107728928,LOC107602146,LOC107660602,LOC107657539 coding upstream 32528 19673260 ~ 19676836 (+)
hibch hibch,LOC107660603,LOC107714371,LOC107741945 coding upstream 42751 19643049 ~ 19666613 (+)
map2 map2,LOC107673740,LOC107555937,LOC107741924,LOC107660616,LOC107596094 coding upstream 825039 18793081 ~ 18884325 (+)
kansl1l LOC107741922,LOC107660662,LOC107555936,LOC107596092 coding upstream 917998 18773760 ~ 18791366 (+)
heg1 LOC107555935,LOC107741920,LOC107660617,LOC107673741 coding upstream 937625 18760460 ~ 18771739 (+)
osgepl1 osgepl1,LOC107660598 coding downstream 2858 19717262 ~ 19720435 (+)
zgc:136439 zgc:136439,LOC107660597,LOC107602150,LOC107728935 coding downstream 17951 19732355 ~ 19733971 (+)
slc40a1 slc40a1,LOC107660595,LOC107602151 coding downstream 27236 19741640 ~ 19748311 (+)
stat4 stat4,LOC107660593,LOC107728930,LOC107714380,LOC107657497 coding downstream 52259 19766663 ~ 19778896 (+)
stat1b stat1,LOC107728932,LOC107660594,LOC107602152,LOC107714382,LOC107565020 coding downstream 67259 19781663 ~ 19790963 (+)
G71586 NA non-coding upstream 74517 19634452 ~ 19634847 (+)
G71583 LOC107741931,LOC107660608,LOC107602131 non-coding upstream 88888 19615694 ~ 19620476 (+)
G71581 LOC107741931,LOC107602131,LOC107660608,LOC107714367,LOC107657499,LOC107565025 non-coding upstream 102163 19606985 ~ 19607201 (+)
G71517 NA non-coding upstream 453131 19256030 ~ 19256233 (+)
G71509 NA non-coding upstream 458207 19250839 ~ 19251157 (+)
G71627 NA non-coding downstream 37178 19751582 ~ 19752090 (+)
G71628 NA non-coding downstream 37904 19752308 ~ 19752693 (+)
G71630 NA non-coding downstream 38826 19753230 ~ 19753756 (+)
G71629 NA non-coding downstream 40120 19754524 ~ 19755093 (+)
G71631 LOC107660592,LOC107728907 non-coding downstream 41462 19755866 ~ 19756178 (+)
G71585 NA other upstream 87871 19621284 ~ 19621493 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other upstream 165687 19512854 ~ 19543677 (+)
cps1 cps1,LOC107660611,LOC107741925 other upstream 777902 18896602 ~ 18931462 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other upstream 1019822 18682672 ~ 18689542 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other upstream 1066878 18635106 ~ 18642486 (+)
si:dkey-10c21.1 NA other downstream 498991 20213395 ~ 20218120 (+)
gulp1a gulp1,gulp1a,LOC106581930,LOC107584160,LOC107717010,LOC107657514,LOC107562715,LOC107699007,LOC107714392 other downstream 634423 20348827 ~ 20362462 (+)
G71825 ttnb,LOC107657493,LOC107714355,LOC107601612,LOC107716993,LOC107698997 other downstream 710597 20425001 ~ 20750851 (+)
G71835 ttnb,LOC107716993,LOC107698997,LOC107601612,LOC107714355,LOC107657493 other downstream 722754 20437158 ~ 20764175 (+)
G71842 LOC107728921,LOC107660591,LOC107602138 other downstream 845238 20559642 ~ 20569276 (+)

Expression


Co-expression Network