G71630


Basic Information

Item Value
gene id G71630
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19753230 ~ 19753756 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU106055
TTTGGAGCAGCTTAACCGGCCGAAACAAAGGTCCCTGATGGATCAAAGTAGCTGCCTTTAGTCAGTTTCACAGATTCAAAGACCACCGTGATCAGCAAGACCCATGTCTCTTACATATTTCATCAGATTAGTCTCACCGAGTGATTATCAGCTGCTTTACTGTTAATCAGAAACTGATACAAGACCAAAGTTTAAAACAATATCAACATTAAATATCCAGAGGTCGTGTAATTGTACCAAAAGTTTACAAAACACTAAATggattcagtttattttttgtgtgtggatgAAATCAAACTTGGTACAAAGCTGCCCACGGATTTATGGCTCAATAATTAAGCGTGAGAGGATTGAAAATACTGTACAAAAGAAGATTTAGCACTCGCAATTTCCCGGTTACTATAACTACATATCCGCAATCCATGCTTCATGATACAGTAAAACACTAACTTCATATCCGTCATAATTTTAGCTTCAAATCATATGACAAAAATGTACCGGTTAAGCTTTAACATGCaattataaaa

Function

GO:

id name namespace
GO:0030120 vesicle coat cellular_component
GO:0030126 COPI vesicle coat cellular_component
GO:0030137 COPI-coated vesicle cellular_component
GO:0030660 Golgi-associated vesicle membrane cellular_component
GO:0030662 coated vesicle membrane cellular_component
GO:0030663 COPI-coated vesicle membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106055 True 527 lncRNA 0.36 1 19753230 19753756

Neighbor

gene id symbol gene type direction distance location
slc40a1 slc40a1,LOC107660595,LOC107602151 coding upstream 4919 19741640 ~ 19748311 (+)
zgc:136439 zgc:136439,LOC107660597,LOC107602150,LOC107728935 coding upstream 19259 19732355 ~ 19733971 (+)
osgepl1 osgepl1,LOC107660598 coding upstream 32795 19717262 ~ 19720435 (+)
mstnb LOC107728928,LOC107602146,LOC107660602,LOC107657539 coding upstream 76394 19673260 ~ 19676836 (+)
hibch hibch,LOC107660603,LOC107714371,LOC107741945 coding upstream 86617 19643049 ~ 19666613 (+)
stat4 stat4,LOC107660593,LOC107728930,LOC107714380,LOC107657497 coding downstream 12907 19766663 ~ 19778896 (+)
stat1b stat1,LOC107728932,LOC107660594,LOC107602152,LOC107714382,LOC107565020 coding downstream 27907 19781663 ~ 19790963 (+)
LOC122351701 NA coding downstream 38455 19792211 ~ 19793933 (+)
nemp2 LOC107660589,LOC107728924,LOC107714385,LOC107602139,LOC107565024,LOC107657526 coding downstream 118665 19872421 ~ 19881143 (+)
spegb speg,LOC107602155,LOC107714387,LOC107728905,LOC107657495 coding downstream 145068 19898824 ~ 19972821 (+)
G71628 NA non-coding upstream 537 19752308 ~ 19752693 (+)
G71627 NA non-coding upstream 1140 19751582 ~ 19752090 (+)
G71586 NA non-coding upstream 118383 19634452 ~ 19634847 (+)
G71583 LOC107741931,LOC107660608,LOC107602131 non-coding upstream 132754 19615694 ~ 19620476 (+)
G71581 LOC107741931,LOC107602131,LOC107660608,LOC107714367,LOC107657499,LOC107565025 non-coding upstream 146029 19606985 ~ 19607201 (+)
G71629 NA non-coding downstream 768 19754524 ~ 19755093 (+)
G71631 LOC107660592,LOC107728907 non-coding downstream 2110 19755866 ~ 19756178 (+)
G71632 NA non-coding downstream 2804 19756560 ~ 19757105 (+)
G71633 NA non-coding downstream 3549 19757305 ~ 19757794 (+)
G71636 NA non-coding downstream 11198 19764954 ~ 19765218 (+)
ormdl1 ormdl1,LOC107602148 other upstream 38826 19709364 ~ 19714404 (+)
G71585 NA other upstream 131737 19621284 ~ 19621493 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other upstream 209553 19512854 ~ 19543677 (+)
cps1 cps1,LOC107660611,LOC107741925 other upstream 821768 18896602 ~ 18931462 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other upstream 1063688 18682672 ~ 18689542 (+)
si:dkey-10c21.1 NA other downstream 459639 20213395 ~ 20218120 (+)
gulp1a gulp1,gulp1a,LOC106581930,LOC107584160,LOC107717010,LOC107657514,LOC107562715,LOC107699007,LOC107714392 other downstream 595071 20348827 ~ 20362462 (+)
G71825 ttnb,LOC107657493,LOC107714355,LOC107601612,LOC107716993,LOC107698997 other downstream 671245 20425001 ~ 20750851 (+)
G71835 ttnb,LOC107716993,LOC107698997,LOC107601612,LOC107714355,LOC107657493 other downstream 683402 20437158 ~ 20764175 (+)
G71842 LOC107728921,LOC107660591,LOC107602138 other downstream 805886 20559642 ~ 20569276 (+)

Expression


Co-expression Network