nab1b (nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906)


Basic Information

Item Value
gene id nab1b
gene name nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19833920 ~ 19852625 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU106145
GCAGTAGGGGAGAGAGCGGAAACCAACTAGTTAGAGTGTCCCTCCGTAGTTCAAACTACAGAGTGCGTGAGAGTTAATTCAAAAGAGAGAGCCGAAGGAGCGTCGCTTACCCGCCGAACGCGCGGCACCTCGCTGGACGTCAGGTGAAGCGTCGCGTAAATCAACGGAGCGTCACATTTCAGAACTTTAACAATCAAACAAGCAGACGGCGCTTTTGGAAGAGTTTTGGTgggaaaagacaaagaaagaaaaccaaaagGTATGGCAGCGACTTTACCCAGAACCCTTGGGAGTTGCAGCTCTACCGC
>XM_043248999.1
AGAGAGCAATGTAGCAAGCGCGGAATATCCCAATTCTGGCAGTAGGGGAGAGAGCGGAAACCAACTAGTTAGAGTGTCCCTCCGTAGTTCAAACTACAGAGTGCGTGAGAGTTAATTCAAAAGAGAGAGCCGAAGGAGCGTCGCTTACCCGCCGAACGCGCGGCACCTCGCTGGACGTCAGGTGAAGCGTCGCGTAAATCAACGGAGCGTCACATTTCAGAACTTTAACAATCAAACAAGCAGACGGCGCTTTTGGAAGAGTTTTGGTgggaaaagacaaagaaagaaaaccaaaagGTATGGCAGCGACTTTACCCAGAACCCTTGGGAGTTGCAGCCTACCGCGCATCCTTCAGAGGGCCAACCTGCTGTGCTACTACGACGCCTTTATCCAGCAGGGCGGCGATGGCGTTCAGCAGCTCTGCGAGGCTGGCGAGGACGAGTTTCTCGAGATCATGGCGCTCGTAGGCATGGCCAGCAAGCCGTTGCACGTCAGGCGCCTACAGAAAGCTCTGCGAGATTGGGTCACAAACCCTGCCCTGTTCAATCAGCCCCTCACGTCTCTTCCGTCTGCAGCATTCCGTCTACAAGCTGCCCGAAGGTCACCCACATTGTTACCTGGGAATGGCGCCCGGGGAGAGACCCAAGTCAAAGTGCCCAAGTGTTTGGCAGCTGCTTGCGTTGATCCCGGAAAAGGAGAATCGGGTAACGGGAACTCTTCTGCCACTGTTTCGCCCCTCCAGAGTGGAAGCGAGCCACGTTTTTGGGCAGGTCATGGCACGGAGAGCGAGCACAGCCTGTCCCCGGCTGAACTGGGCTCTCCGTCTTCCCCTCGGGACGGCCTGGAGGCGCTAGATGCGGCTGCTGTTCAGTCCGTGGCGGATTGCGTGGAAAGAATCGCTCAGACTTTGCCCAAGAGTGACCCCGGAGAGGTTAAAGAACTGTTGAAGGGAAATAAGAAGCTTGCCAAGATGATCAGCCACATCTTCGACATGAGCGACGAGGATCCGCACAGGGAGGAGGAAATACGCAAGTATAGCGCCATATATGGGAGATTCGACTCAAAAAGGAAGGATGGAAAGCATCTGACTCTGCATGAGCTGACAGTGAATGAGGCTGCGGCACAGCTCTGTATGAAGGAGGTGGCCTTGCTGACTCGCAGAGATGAGCTTTTCGGACTGGCCCGTCAGGTTTCCCGAGAGGTCACATACAAATACACCTACAGAACCAGCAAATCTCGATGCGGTGACAGAGATGAGCCGTCGCCCAAGAGAATTAAAACCGAGGAGGGCTGTTTTGACCTCCAGGAGGCGCTGCAGGCCATTCACATGCGCCAGGAGACCCTTAAGGAGCAGCTAGCCCACGCCAGATCTAAAGGAGAGGAGACGGTTGGGCGGAACATCCAGGTGACTGACTCTGGGCGTCTGTTGGCCAAGCAGATGGAGATACTGCATCCCGCTGCGGCGCAGGATAGACTGCAGGCTCTAGAGTGGGAGGTTCCACCGGGGCCCTACAAACACAGCACAGACAGGCAGAACAGCAGCGGGCTCTCTGCCGACAAAAACACTGACCAGCAGGGTGAGTTTAGAGGCGCTGAATCTGAGGTGACCAGCCAGAGGGCGAGTGCTTCTGGCGGAGACACAGCTCTTGGAAAGCAGCTGGCCAGGTTGAGGCATCATCACGCTAATGCAGGCAAGACGTCAGCAGCTACAGAAAGCGGAGGTGCATCTTCCACGTGCCTCAGCCTCTCTGAAAGAAAGACCATCAAATCGGGCCGGAAGATTCAGATATAG

Function

symbol description
nab1b Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human NAB1 (NGFI-A binding protein 1).

NR:

description
PREDICTED: NGFI-A-binding protein 1

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K22388 NAB; NGFI-A-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU106145 False 308 lncRNA 0.51 2 19848339 19852587
XM_043248999.1 True 1793 mRNA 0.56 14 19833920 19852625

Neighbor

gene id symbol gene type direction distance location
wdr75 wdr75,LOC107660592,LOC107714378,LOC107728907,LOC107657531,LOC107602136,LOC107565028 coding downstream 67127 19750542 ~ 19766793 (-)
LOC122352057 NA coding downstream 96709 19736033 ~ 19737211 (-)
asnsd1 asnsd1,LOC107728934,LOC107660596,LOC107714374 coding downstream 97799 19733900 ~ 19736121 (-)
adat3 LOC107728938,LOC107714375,LOC107681677,LOC107565014,LOC107660599,LOC107602133 coding downstream 117477 19713485 ~ 19716443 (-)
pms1 pms1,LOC107602147,LOC107728929,LOC107660601,LOC107714373,LOC107565013 coding downstream 124950 19684890 ~ 19708970 (-)
obsl1b obsl1b,obsl1,LOC107660652,LOC107602158,LOC107657519,LOC107728922,LOC107714352,LOC107584169,LOC108423904 coding upstream 144850 19997475 ~ 20029805 (-)
calcrla calcrla,LOC107728927,LOC107657513,LOC107602163,LOC107714396 coding upstream 396363 20248988 ~ 20270532 (-)
tfpia LOC107602164,LOC107728931,LOC107714394,LOC107660650,LOC107584163 coding upstream 418595 20271220 ~ 20295378 (-)
LOC122351553 fkbp7,LOC107562709,LOC107717008,LOC107657501,LOC107584168,LOC107714366,LOC107698996 coding upstream 548759 20401384 ~ 20403699 (-)
LOC122351723 ttn,ttnb,LOC107698997,LOC107714355,LOC107601612,LOC107716993,LOC107657493 coding upstream 558770 20411395 ~ 20417109 (-)
G71692 NA non-coding downstream 42360 19791247 ~ 19791560 (-)
G71645 NA non-coding downstream 121736 19709384 ~ 19712184 (-)
LOC122351289 NA non-coding downstream 152521 19674731 ~ 19681399 (-)
G71667 cunh2orf88,LOC107728910,LOC107657540,LOC107714370,LOC798500,LOC103027948 non-coding downstream 162756 19667000 ~ 19671164 (-)
LOC122351304 NA non-coding downstream 308330 19519740 ~ 19525590 (-)
G71727 NA non-coding upstream 34550 19887175 ~ 19941547 (-)
G71732 NA non-coding upstream 63574 19916199 ~ 19922691 (-)
G71912 LOC107602164,LOC107660650,LOC107728931 non-coding upstream 310498 20163123 ~ 20630423 (-)
G71919 LOC107728915 non-coding upstream 362795 20215420 ~ 20218047 (-)
LOC122351563 NA non-coding upstream 444305 20296930 ~ 20302436 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other downstream 4445 19796252 ~ 19829475 (-)
ankar ankar,LOC107728908,LOC107660654 other downstream 102126 19719942 ~ 19731794 (-)
LOC122352185 NA other downstream 1264038 18569755 ~ 18569882 (-)
sema5ba sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063 other downstream 1467653 18251236 ~ 18366267 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other downstream 2312360 17364187 ~ 17521560 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other upstream 28925 19881550 ~ 19893315 (-)
G71938 nab1,LOC107565022 other upstream 636539 20489164 ~ 20503890 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other upstream 1856663 21709288 ~ 21726820 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other upstream 2318838 22171463 ~ 22223667 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other upstream 2444382 22297007 ~ 22511307 (-)

Expression


Co-expression Network