gulp1a (gulp1,gulp1a,LOC106581930,LOC107584160,LOC107717010,LOC107657514,LOC107562715,LOC107699007,LOC107714392)


Basic Information

Item Value
gene id gulp1a
gene name gulp1,gulp1a,LOC106581930,LOC107584160,LOC107717010,LOC107657514,LOC107562715,LOC107699007,LOC107714392
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20348827 ~ 20362462 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU106394
TCAGCTTTGAACGgccttaacttttttttttggattgcgattgtttacatttttctgttcttCATTAGCTGCTGCATGCTTTTTGAGCATTTGAAaagGTAGAGGTGGCACATTCAGGAAATCACAGCTGAGACGGAGCGTTTTCAAGCATGAACCGGgcatttaacagaaaaaaAGATAAATCATGGATGCACACTCCAGAAGCACTGGCCAAGCATTTTATAGCATACAATGCCAAGTTTCTGGGGAACACAGAAGTTGATCAACCCAAAGGTACAGAGGTGGTGAGAGATGCCGTCAGAAAGCTCAAGTTTCAGAGACACATTAAGAAGTCAGAGGGACAGAAGATCCCAAAGTGGAATTACAGATCTCCATCTACGGAGTGAAAATATTAGATCCTAAATCAAAAGAAGTACAATACAACTGTCAGTTGCACCGGATATCCTTCTGTGCAGATGATAAGACAGACAAAAggatatttacattcatttgtaAAGATTCAGAATCCAACAAACATCTATGCTATGTGTTTGACAGTGAAAAATGTGCAGAAGAGATAACTTTGACCATCGGCCAAGCGTTTGACTTGGCATACAA
>TU106396
TCAGCTTTGAACGgccttaacttttttttttggattgcgattgtttacatttttctgttcttCATTAGCTGCTGCATGCTTTTTGAGCATTTGAAaagGTAGAGGTGGCACATTCAGGAAATCACAGCTGAGACGGAGCGTTTTCAAGCATGAACCGGgcatttaacagaaaaaaAGATAAATCATGGATGCACACTCCAGAAGCACTGGCCAAGCATTTTATAGCATACAATGCCAAGTTTCTGGGGAACACAGAAGTTGATCAACCCAAAGGTACAGAGGTGGTGAGAGATGCCGTCAGAAAGCTCAAGTTTCAGAGACACATTAAGAAGTCAGAGGGACAGAAGATCCCAAAGTGGAATTACAGATCTCCATCTACGGAGTGAAAATATTAGATCCTAAATCAAAAGAAGTACAATACAACTGTCAGTTGCACCGGATATCCTTCTGTGCAGATGATAAGACAGACAAAAggatatttacattcatttgtaAAGATTCAGAATCCAACAAACATCTATGCTATGTGTTTGACAGTGAAAAATGTGGAAACAGCATGTCTTCGAAGACGCCCACTGACATATTGACATGGTTCCATTTTCTCAATGACCCCATTGGTTCCATTACCAGCAAGTAATGGCTCCGCC
>TU106397
AAAGCGAATAAGTCGCCGGCTCTACATTTCACCCATCTTTTCGTTTTCGTCTAAAGGCTCTCTCCACTGGTTTTCTCATTTGGTTCGTCTTTGGCAGAAGACACTGGCTGGTGCTTTGGAAATCTCCTCTCATTATTGGTAGAGGTGGCACATTCAGGAAATCACAGCTGAGACGGAGCGTTTTCAAGCATGAACCGGgcatttaacagaaaaaaAGATAAATCATGGATGCACACTCCAGAAGCACTGGCCAAGCATTTTATAGCATACAATGCCAAGTTTCTGGGGAACACAGAAGTTGATCAACCCAAAGGTACAGAGGTGGTGAGAGATGCCGTCAGAAAGCTCAAGTTTCAGAGACACATTAAGAAGTCAGAGGGACAGAAGATCCCAAAGTGGAATTACAGATCTCCATCTACGGAGTGAAAATATTAGATCCTAAATCAAAAGTATGTGCATATAGCCTA
>TU106398
TCAGCTTTGAACGgccttaacttttttttttggattgcgattgtttacatttttctgttcttCATTAGCTGCTGCATGCTTTTTGAGCATTTGAAaagGTAGAGGTGGCACATTCAGGAAATCACAGCTGAGACGGAGCGTTTTCAAGCATGAACCGGgcatttaacagaaaaaaggTATGTGTGTTTCAACCAGTTTTTGTCTAGCTTTCATCTTTGTTCTCTGTCTTTCCATTTAGCTGAAAAACCTAGAGGGCTGTCAAACGATTTGAAAATCATATAAATCATGGATGCACACTCCAGAAGCACTGGCCAAGCATTTTATAGCATACAATGCCAAGTTTCTGGGGAACACAGAAGTTGATCAACCCAAAGGTACAGAGGTGGTGAGAGATGCCGTCAGAAAGCTCAAGGTAAGTTTTACATTGGCTGTACACTGTAGGGGCCGTTGCTTCCATCTTGAAACAGGAAATGCTATTTCTCTTGAGAGGATGTAATATCAGAACGCCCCAGCTGTTTCAGACCTTCAGTGGAGGATCACAGTTTACTTGTTGTTTAATGATGCATAgagaatttaattttatgaacCCTCTACTATCAGTATTACTAATTTGACAAATTAGCAAA
>XM_043249000.1
ttaacagaaaaaaggTATGTGTGTTTCAACCAGTTTTTGTCTAGCTTTCATCTTTGTTCTCTGTCTTTCCATTTAGCTGAAAAACCTAGAGGGCTGTCAAACGATTTGAAAATCATATAAATCATGGATGCACACTCCAGAAGCACTGGCCAAGCATTTTATAGCATACAATGCCAAGTTTCTGGGGAACACAGAAGTTGATCAACCCAAAGGTACAGAGGTGGTGAGAGATGCCGTCAGAAAGCTCAAGTTTCAGAGACACATTAAGAAGTCAGAGGGACAGAATCCCAAAGTGGAATTACAGATCTCCATCTACGGAGTGAAAATATTAGATCCTAAATCAAAAGAAGTACAATACAACTGTCAGTTGCACCGGATATCCTTCTGTGCAGATGATAAGACAGACAAAAggatatttacattcatttgtaAAGATTCAGAATCCAACAAACATCTATGCTATGTGTTTGACAGTGAAAAATGTGCAGAAGAGATAACTTTGACCATCGGCCAAGCGTTTGACTTGGCATACAAAGAAGTTTTGGAATCGGGGAAAGACGTAGAGACAAGAAAACAGATAGGTGGCCTGCAGAAAAGAATTCAAGATCTTGAAGCTGAAAATTCTGAGTTGAAGAAGCATTTGCAAGTTTTGGAGGAACAGCTGATGATTGCTCAAGTTCCTCCTCTTCTTCACATTAACTCTTCTAACGAGGCCTATATGCTTCAGAGACCCTCATCTCTCTTCTGGTGTCACAACGTGACCTCGTTCTCTTGCCAAATCTCTTCTGTTACACTAACGCCAATGAGCTCGCTTGACTCTAACCTTTCTGCTGGTCTTCTGACTCCTCCACCTGCTAAACCAGCTTTGTCAAAGCCTCCCAGTGGAGCCAGTGTTCCCTCGCCCTCCTGTTAA

Function

symbol description
gulp1a Predicted to act upstream of or within apoptotic process and phagocytosis. Predicted to be located in cytoplasm. Is expressed in immature eye; midbrain; notochord; and pharyngeal arch. Orthologous to human GULP1 (GULP PTB domain containing engulfment adaptor 1).
gulp1 Acts upstream of or within phagocytosis, engulfment. Predicted to be located in cytoplasm.

NR:

description
PREDICTED: PTB domain-containing engulfment adapter protein 1 isoform X3

GO: NA

KEGG:

id description
K23285 GULP1, CED6; PTB domain-containing engulfment adapter protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU106394 False 597 lncRNA 0.40 7 20349260 20361149
TU106396 False 647 lncRNA 0.41 7 20349260 20362462
TU106397 False 467 lncRNA 0.43 5 20348827 20360513
TU106398 False 626 lncRNA 0.40 4 20349260 20360204
XM_043249000.1 True 913 mRNA 0.42 11 20353195 20361802

Neighbor

gene id symbol gene type direction distance location
lrrc3 lrrc3,LOC107714365,LOC107714364,LOC107602160,LOC107657503,LOC107584166,LOC107728914,LOC107660577 coding upstream 164660 20178303 ~ 20184167 (+)
pcbp3 pcbp3,LOC107660579,LOC107728912,LOC102308458,LOC108423908,LOC107657516,LOC108250327,LOC106920547,LOC103139210,LOC105905915,LOC106581674,LOC105007398,LOC108266078 coding upstream 180223 20114744 ~ 20168604 (+)
col18a1a LOC107660582,LOC107657518,LOC107714390,LOC107584150 coding upstream 242548 20040872 ~ 20106279 (+)
ctdsp1 ctdsp1,LOC107714388,LOC107602156,LOC107660585,LOC107657521,LOC107584167,LOC108423903,LOC103359966 coding upstream 352278 19975476 ~ 19996549 (+)
spegb speg,LOC107602155,LOC107714387,LOC107728905,LOC107657495 coding upstream 376006 19898824 ~ 19972821 (+)
LOC122351546 nab1b,LOC107565022,LOC107602153,LOC107660590,LOC107714351,LOC107728906,LOC107657527 coding downstream 171616 20534078 ~ 20551640 (+)
LOC122351548 gulp1a,LOC107717010,LOC107562715,LOC107657514,LOC107714392,LOC107584160,LOC107699007,LOC108435068,LOC108266479 coding downstream 290302 20652764 ~ 20693103 (+)
LOC122351740 cherp,LOC107742793 coding downstream 796705 21159167 ~ 21168870 (+)
LOC122351537 LOC107689611,LOC107710004,LOC107590402,LOC107601255 coding downstream 808299 21170761 ~ 21178413 (+)
cwc22 cwc22,LOC107699014,LOC107676081,LOC107601622 coding downstream 879081 21241543 ~ 21279192 (+)
G71705 LOC107660652,LOC107602158,LOC107728922 non-coding upstream 345041 20000796 ~ 20003786 (+)
G71638 NA non-coding upstream 545791 19777378 ~ 19803036 (+)
G71636 NA non-coding upstream 583609 19764954 ~ 19765218 (+)
G71633 NA non-coding upstream 591033 19757305 ~ 19757794 (+)
G71632 NA non-coding upstream 591722 19756560 ~ 19757105 (+)
LOC122351566 NA non-coding downstream 31217 20393679 ~ 20395192 (+)
G71821 ttnb,ttn,LOC107716993,LOC107657493,LOC107601612 non-coding downstream 58693 20421155 ~ 20431311 (+)
G71822 ttn,ttnb,LOC107714355,LOC107698997,LOC107657493,LOC107601612,LOC107716993 non-coding downstream 59809 20422271 ~ 20748188 (+)
G71826 LOC107698997,LOC107601612,LOC107657493,LOC107714355,LOC107716993 non-coding downstream 62909 20425371 ~ 20751525 (+)
G71843 NA non-coding downstream 86745 20449207 ~ 20490232 (+)
si:dkey-10c21.1 NA other upstream 130707 20213395 ~ 20218120 (+)
ormdl1 ormdl1,LOC107602148 other upstream 634423 19709364 ~ 19714404 (+)
G71585 NA other upstream 727334 19621284 ~ 19621493 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other upstream 805150 19512854 ~ 19543677 (+)
cps1 cps1,LOC107660611,LOC107741925 other upstream 1417365 18896602 ~ 18931462 (+)
G71825 ttnb,LOC107657493,LOC107714355,LOC107601612,LOC107716993,LOC107698997 other downstream 62539 20425001 ~ 20750851 (+)
G71835 ttnb,LOC107716993,LOC107698997,LOC107601612,LOC107714355,LOC107657493 other downstream 74696 20437158 ~ 20764175 (+)
G71842 LOC107728921,LOC107660591,LOC107602138 other downstream 197180 20559642 ~ 20569276 (+)
LOC122351557 znf385b,LOC107699013,LOC107717003 other downstream 617974 20980436 ~ 21050572 (+)
LOC122351742 cwc22,LOC107699014,LOC107676081,LOC107601622,LOC107562708,LOC107755368 other downstream 840683 21203145 ~ 21216426 (+)

Expression


Co-expression Network