G71912 (LOC107602164,LOC107660650,LOC107728931)


Basic Information

Item Value
gene id G71912
gene name LOC107602164,LOC107660650,LOC107728931
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20163123 ~ 20630423 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU106549
tatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaattcaggtgtttttaatacattttaacactttttattgatttatggaGAAGAAATTACAAATTTATGTACTGAAATActcattacatttcattaaaaattacttttattattattttcaactgCTACTGATATTGTCAGCCTATTGTTATTGCATTTTAGAGTTCAATCCCCAGAATTCTGCTTGAGTCCAGTTGATAGGGCGATTGTGATGAATCTGTGAGGAGATATGTTTACAACCCCAGGACTGGGAGATGCCAGATGTTTCGTTACAGCGGCTGCGGaggcaacaaaaacaactttgtcCACAAAAGACACTGCATGAAAATGTGCACGAAAGaTCACAGCCGGAGGAAGCAAATACGGATAAAGACAAAAAACTCTAATATCTTATTCCGATCTATCTAGGACAATACCAAATCCTAAACCACTATATAAAgaggaaataagaaaaaataagaaacagcaGCATATAGTACCTCTCTGGCCCAGAAACTGTTCTCATGTATATAATTATCACAGTTAATGGAATTTTAATCTGgccttcatatatatatatatatatatatatataaagacattctacatactttaaatgtaaaacataatctAACGCTCTATGTTATGTtctaaaatactaattaaattgtatcaaaatatacatataataaaatatacacacaaacacacacacacgcacacacgtatataaaatgtatctttttttttcctcttttttttatttccacagtTCCACTTATGGATCTATTTATAGCTATTTATGGTTGTTATATTTGCTGGCAATTCTAAACcctttgtctttctttcctttatttttttcaaacctaccaatttattatcattttatatatgattaatcTTTATTATATGTTGTTTATAAAGTACACTCCAAATGATgttgtcaaatgtttttatgccCTTGCACTGTGACCTTGAACTCTTGAGGAAACTTGaggcaaatgtattttttttcttcatccagGACACGGCGATTCAAAGTTGAGTCTAACATAAAAATTATAGAAAACGTGACCAGCGGATCATCGCTAAGAGCCACTTAACCCTATATGACTGCATAATTTACTAACATCTTAAATTTCCAATAAAGTACCAGCAAATCAATTGTGGAAAGTATTGTAGGACTTCTTGTTGGTTTAAAAAAGGACTCTGTTTTCTACACAAGATGGAGCTGTTACTCTTAGAAGACATGAAATCCACTACTAGTGGTTAAAACGTCTTTATATGcactcataataaaaaaaaactgtatttgaatTAATATAC
>TU106551
TTCAAGGGAAAACAAACTTTATTATCTcctttttacaaaacatttcaaagtttAACCTAACCTCAGCAGTAATTTGAATCTAATATAGACCTGCAAGCAGCAAACTGTCCAACACAAAATAATTactcttacttttttttccccccaaacaGAATCATTTACAGAAGCACAGACAGGTagagggctttttttttttttttttttgctgctctaGTACAAAGAAAAACTGCATGACCAACAAAACGAATGTAATGATCCTAGATGTGCACAGTGAGAATTCATGAGTGTTAAATGTATGAGTGCAAATTAACCACATGATTTGCGTGAGAACAACATCATGTGAATATCATGAGGTCGGGCGGAGATGAAACatgagaaaaatacaaaaagccgTTTGCAATGGCGTACTGACTTTCCCACCAAACAGTGAATCATTTTCGACACGTCACTGCGGTCCTATacgaacatttatttttttattgcatttgtgaAATGATAGTCATAACagtagtaataaaaaataacaaaagcctCCCTTGGTGAAGCATTCTGCTACTGAGAAATGTCGAAGTTACGCATGCTGCTGTctgaatattaatatgcatcTGTACAGTGATCTAGAGTACAGCACGTTATGGACTAAACAgaacatcaaataaaacattccaTACATGTATCACAAGACATAGCCTTGTGTGAACATACAATCTAACTTAATGTTAACAGAGTCTAAGACACtgacacaaatattacatttcaaagcAGTGCAAAACATATGGTAAATGCGACGACAAGAAACTCAACGCTGAATCTAAAACACCAACAAAACGTGTTGAATAACGTGTCGAAAAATGAGCTACTTTAAAGCAACAGCATGACATCATTTCCGGCCATGTGCACGGATGGCTCAGCATGACCATGTGCATACCTTTACTAATCCAACATTAGAAAAGTTCTGTGCTCATAATGgacattaaatcataaaatgtcaGATTTCGGTGTGAATTAACTCTTGGGTGCATATCTGTGAATTGACTGCAGTGAAACTGCTAAACGGATACCgaatagaaatatagaaatatatatctTTACAACTTCGATGCTTTGCAAATGCATGCTTTCGTAccagattaaataaataagaatgtaTTCTTTATGAAAGCTTGTTTCCGGctatgaataaaacataaagaaaTAGTGACTTTTATATCACAATTCAGACGTTTTTCTCGCAATACAAACgagattttaaattattattttttcccccatagtgaataaacctttattttttttttcttgcaactATAAtcttatatctcataattctgtcCTGAAAATTTTTCTTCGAATGATAAGAAACCAAAActgtgagggggaaaaaaaaagtcaaaattgtcaGATCTAAATTTTATCCCGTGGTGGAAACACACTTCCATAATTTTGTTGCAAGACTGTGAAAGAATTGTTTTTCTTCCTGTGCATGATTACATATTCTCATGTAAAAAGCATGCAATTGGAAAAACGGCAAGAAGGTAAACTAGAGGTTGAATAATGAATCACGTTGAAGCGGTTACATTCAACTTTCAGCTTCGATgccacattttacacatttaaatgtggaGGATGAAATACATATTGATGGCTGACTGAAAGAGTTCCGATTTGGATAAAATGGGAACTCGACATGACCTCAGCCTGGTCGCAATCTTCAGGAGAAATTGGGAAAACGTTCAGAGCTTAATCAGAGGGGGCTTCAGCACTGGAAATAAATTGCTTAACACGACACTGACAGTTTTGCTGGGGCGAGAattgaagtgtgtaatttctgcgCGACTAGCGGCAAcaaacaaaattgcaaaaataatgacttcaaTCATTCCCCTGTCTGTTTCAATGGAAGTCAAAAGGATGAAATGCCTCAGTACACTGACTAAACAAGTTTTGTTTGGAAACAGAACAAATTGAGTGCCTTGCTGCTAATCTTTCACACGCACAGCATGGCATATTAATTTTAGAGGAAGgtaacttatttttttgtagcatctctaaatatacatttctccACAGGCATTTACAATACAACAGATGGGGTTTACGGCACTGCACATTCATTTATAAGGTCTCCAGACTTGATAAGTACTTCAATGCCATCAGGGTCTTTATATAACTGCTTTACGAGACGCATGTACCGTAAAAAGAGCAtctttgcatttatataaacatcGCATGTCAGTCAGATTTGCCGCGGATTGTTTTGTGCCGCAGAaattacacatttctttttcgTAGCTGTATGATCAgggataaaaatataattgaaggTGCAAATAGGTGGCTAAAATAACTGGAAGGAATCATTAATAGAGTGTACAGGCTGtcttaataatactaataataattaatcacagcaaaacatgcaacataaacagcttaaattcaatttttgcatgtgagaaaaatattattagagcTGATCAGTAAGGCTACATCAGCAGGAGATACACTCAAGAATCATGGgtatcagtaataataatataaacacacagcGGCTTTAACTGAAGCTAAACAACTGTTATAAAGAAACAATCATGTTTAAGAGCAGACCAGGGTACAAAATCTGCCATCACTTTTGAAAGTCTGGCCAAAACCAATGAACATTCTAGAGCCCGAGATGATCCTGACTAATCACTGAAGAGCGGACTAGGGAAATAACAAGCGCTCTGTTGTATTGGTCTGTAGCAGAAATAGGGGCACGGCAGCCGTGTCGACTGTGCGTGCGCATGTTTCAGAAGCTGTCAGTGGAGAACGACCTCTTAGTCTCGTCTGACGCATGCAGAGCCTGTGCATGACTTTTCGGTTCGACTGACAAACATGGTTTTGGAGAGCAATATGGAAAACACTGTCAGAATGAAGTGCGCTGCTGGACACGTGAGGACAGGGTCCAAAATGAACACTCGCCAGCTACCAAGGGTGAGTAAAAACTGACTTGAAATCGGATAAGTTCGAATTGTGAAACCAGGGGCCTTGGTTGTAAAGACACGCGTATAATGTTCGACATGTTCCAAAATGTACCTACGAATGAATCAACAGCGTTGAAATAACGTCTGTATTTACAaacgatttttttaaaatgagtcccACTTTAGAAACTGCAGTTCAgcatgaatttttttatgtgtaaaaacaatgaatgtatgtgtgtgtgtgtgtgaagtcaaATCTGATCGTAGGCGTTTTTTTATAAACGAGGCCCCTGAagattatcataataataatgcaaaatacagtTTGATAGCAGgtaaaaatgttcattcacAACATAGAGTAGTggcaaaaagttaattttgggCCCTTCGTGAGAGTTTACCATACTCACAGAGAGAGCGTATGGTAGAGGAGCACGGGGTGGATTTCATTATCAGCACATCTGTATTCACTTCCAGAGAAATAAAGCCACTGTATTTCTCACACTACTGCAAAAACACGTCGCATATAAAAATATCCTATAAATAATTCTGCGGTAATATATCCAATTACTTAAACTTAGATTGTGGGTTGAATTGAAATGTCCCAGCATGCAGTAAAGCTCGGAGCACGGCTCATACAGTACGTCCTCAcattgattgtttgttttcataccGATTTTGGTCTTCCTCTCAGTTCTGAAAGTGAATGCAAGAAGCTAATAATGGATTCTCGGTGTTACTCCGCATGCCACAATGACAGATGCAAACAAATCGTACAGGCGTGGTGCAAACATTCCAACTCCATCAGTCGGTTTCATTATTCATGTATGAGATGCACTGTTGTAAGGTTCCCGGTGAGCAAAGCCCTGGAGCAAAAGCACAGGACTACTGCTTTAAACTCGATCTGACCTAATGAAAGACTGAAAAATCGGAGGATTTCATTGGCTTTGCTGTACCACACCACAAAATACGGATTGAAAAACGTGAATTCACAGTGAAAGCGATGGCAAAACAGGACACCGGTGACGTGAGGTACTAGAGAGTCAAAAAAAGGTAAAGTgtctttgaaaataattataaagcaGGACCATCGGGAGCACAACAAAGGTTGAGTAGGAGGAACATCAAACTGAGATTTGAAATATGTGCACattatagaatataaattaGTCAGAATTACTGAAAATACAGGACAGCAAAAGtacagagagaaaacaaactAGGTGCAATGCCATTGGTTCAAGGGTCATGTGATGCAGTGAAGGATCATGGGTAGAAATTAGAGAGTGCCCATTCCAGTGACCTCAGACGTCAGCCTAGAATAGTTAAGGGAAGAGGAAAAGGGGGTGGGGTAAGgaaaagatagaaaaaatagataacataaaataattctgaaagCATTTGACACTTCTGTACAAAAATGATAGCTTTTTCCGCCTTGTTGCTCTCCGCGTCGAGTAATAAGCATGCATTACCGTCGATTCGGCTAAGCTGAAAACAATCAAGCtcttaacaaatgcaaaaataaaatctcttcCGCTTCTAAAGAAACACAGTTTCCAGCATTTCCCCGATTCTGACATGCGTTTGTTCTTCGTTACAACATCTGCATCACATCACTAGCTCCTTGCCAACAGCATTGCTAGAAAATGCTATTGGGTTCAAACTACAAGACTTATGCAGCAACCGTACTGAACTAATCTAAcaaatttaaagaataaataaatatgtaacaagATCCAAGCATTCGGCATGCTAAAATACTACACTAAAACACTGCATAACATGAACAAATCATACTACAGTTgacctgcttttctttttaaggtttttttttttttttttaagtcagtaGTCTGCCTACATGATCGTAGCTACTGATGAAGCTGACCATGGGGTTTAAGGGAAAGGTTGGTGACCTCTAAGGGAAgattgtatacataatatatatatatataatgttttttaggAATCAGCTGCTGATAGCTTCAGATAATGAAAGCAGTTTGGGGCTTCAGGATGTAGTCATTGATGAGGGGTCATTCCACATGGCGGCCACGTCTCTGAACCTGCCATCAGAACCGTGGGAAAGCAATATGCATTAGTTTGGCCCCGGCCGCTACCCTGCAAGCCTCAACATCACACACAAGAATAGATTTAATGGGCCTGTGGCTAAACATCTCGGATTCCCCGAACACACAATGTGAAGATCCTATCTGAGCTGCTTTTAGGGAACTGTTTTGAGTTAGAACACCAGAAAAATGTTTGGAAACACTTTTGTGAAATGTTGACAGGCTCACCTTGCGTTGATGAGGTACTGGGCAAGGCTGATGTTGGCGGGGGTTCCTGTAATGGTTATCTGGCGCTCTGATGACCCTTCCATGGCATTAGCTATTTTGATCTGCGCTCCAGACATCTGACGGATCTCGTTGATTTTGGTTCCCTGGCGCCCGATTATGCAGCCTATTAG
>TU106557
TTGACTATTTGGAGCCACAAACTGAACTACAGCCTACTTACTTCTCCACATAACCCTGGAAGCGTGTGATTGCCTCGCCTGCTGGAATGGCTCCATTGCTGGGCTGGTCGTGCAGACCGCTGCTTCTACTGCCTCTCGTTGGAATATGCTTCACAAAATTTGCAAAAGCAGATGGAGTGAGGTCTGAACTCCACATATTCCATCACTCATGCGCCCTGAAGAAAGACGAAGGGCCGTGCAAAGGCAATAAAGGACAGGTTCTACTTTAACACTGACACAGGTCGCTGTGAATTCTTTGAATACGGAGGATGCCAAGGCAATGCTAACAATTTCGAGACCCTGCAGGACTGTGAGGAAATGTGTCTTGTGAAAGGTAAGGCAATATTTACCTGACTTGTGTTCTTctgtgacaaaacaaaaacaaaaatagcagaatttatgtataataatatttagattcaGTGCATCATTCGGAATGAGGATGTGTCCTGTTAGTCAATTCCATTTTCGCTCAGTCAGTATATTGGATGGCCTGACCTTGACTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106549 False 1370 lncRNA 0.30 3 20271058 20602822
TU106551 True 5439 lncRNA 0.39 2 20163123 20168604
TU106557 False 547 lncRNA 0.44 2 20612889 20630423

Neighbor

gene id symbol gene type direction distance location
obsl1b obsl1b,obsl1,LOC107660652,LOC107602158,LOC107657519,LOC107728922,LOC107714352,LOC107584169,LOC108423904 coding downstream 133318 19997475 ~ 20029805 (-)
wdr75 wdr75,LOC107660592,LOC107714378,LOC107728907,LOC107657531,LOC107602136,LOC107565028 coding downstream 396330 19750542 ~ 19766793 (-)
LOC122352057 NA coding downstream 425912 19736033 ~ 19737211 (-)
asnsd1 asnsd1,LOC107728934,LOC107660596,LOC107714374 coding downstream 427002 19733900 ~ 19736121 (-)
adat3 LOC107728938,LOC107714375,LOC107681677,LOC107565014,LOC107660599,LOC107602133 coding downstream 446680 19713485 ~ 19716443 (-)
col5a2a LOC107584152,LOC107657512,LOC107714354,LOC107717009,LOC107699008,LOC107562716 coding upstream 64137 20694560 ~ 20718541 (-)
LOC122351555 fkbp7,LOC107562709,LOC107717008,LOC107657501,LOC107584168,LOC107714366,LOC107698996 coding upstream 98917 20729340 ~ 20731777 (-)
LOC122351538 ttn,ttnb,LOC107698997,LOC107716993,LOC107657493,LOC107601612,LOC107714355 coding upstream 106600 20737023 ~ 20746870 (-)
LOC122351730 ttnb,LOC107657493,LOC107714355,LOC107698997,LOC107601612,LOC107716993 coding upstream 117452 20747875 ~ 20750613 (-)
LOC122351731 ttnb,LOC107698997,LOC107714355,LOC107657493,LOC107716993,LOC107601612 coding upstream 120229 20750652 ~ 20751262 (-)
G71727 NA non-coding downstream 221576 19887175 ~ 19941547 (-)
G71732 NA non-coding downstream 240432 19916199 ~ 19922691 (-)
G71692 NA non-coding downstream 371563 19791247 ~ 19791560 (-)
G71645 NA non-coding downstream 450939 19709384 ~ 19712184 (-)
LOC122351289 NA non-coding downstream 481724 19674731 ~ 19681399 (-)
LOC122351564 NA non-coding upstream 2270 20632693 ~ 20637422 (-)
G71957 ttnb,LOC108435066,LOC108266290 non-coding upstream 127195 20757618 ~ 20758206 (-)
G71981 NA non-coding upstream 562642 21193065 ~ 21193278 (-)
G71984 NA non-coding upstream 575792 21206215 ~ 21206762 (-)
LOC122351567 NA non-coding upstream 602763 21233186 ~ 21245785 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 269808 19881550 ~ 19893315 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other downstream 310498 19833920 ~ 19852625 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other downstream 333648 19796252 ~ 19829475 (-)
ankar ankar,LOC107728908,LOC107660654 other downstream 431329 19719942 ~ 19731794 (-)
LOC122352185 NA other downstream 1593241 18569755 ~ 18569882 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other upstream 1078865 21709288 ~ 21726820 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other upstream 1541040 22171463 ~ 22223667 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other upstream 1666584 22297007 ~ 22511307 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 3299784 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 3313562 23943985 ~ 23960325 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G57704 NA non-coding CI01000009 null 12305639 ~ 12372174 (+)