LOC122351563


Basic Information

Item Value
gene id LOC122351563
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20296930 ~ 20302436 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU106560
CTCGGATATTGTGATGAGCACAAAGTGGCGGAGTGACGAATAGGGCCTCAGAGTAATAAAACATTCACTACATCGCTGCCAAACGGCCACGGTGAGCCACTTCCTCATGGAGACACGATTAACAAAAGGAAAACCTCTCAGAAAGAAGCATTGGAATACTTGCTAAAGACGAATCGCACTGCCTGGATTTCTGCTGGAGTTGTAGCGTCACTTTATCATTTAGGTCAAACGAAACTAGGCCACCCAGTGAGACTGTAAGGAAATCACAGAAAAGTGGATCCAAGGGCCAAAAAGAAAAGCGATCCTTTGTTTTAGACAAACCGTTGCTCAAGGTGACCTGAAGCAGTTTGTTTTCCATAAGATGGATAAGTGGGCAACATCATCCAGCACAGCACAGGGGAATGAGAGCTCGTCTGCCCCAATCATATTTTCTACCCTGTCTTCACGGTAAACACCAATCTGTGGGACCCATCTAGGACGAACTAGGATGCATTCACGAAGACATTATCCAGACTAAACACACTGCCCAGAATGTTTCAAGCCTCTCAGAAGAATAACTGTATATCAATAACAGAGATTATGGAGGTATAtgattttcatataatttatatttatatgtatttatgtctatctatctatctggttGTGTTGTTCTGCAATACCCTGAGACTGTAAAGCATAAATCAATCTCGCGTCTGTAAATTTGTCATCTTTGCATTGATATGTCATGTGAGCAGTACACAATTTCATGAGGCATAAGGGTCTGAACTGAGGTAGCACATTATGAAATGGAATGTTTTGATACACATTTTAGttggtcattaaaaaaatgaatcgttttGTGGTATCCTGGGAAACAAGGCCAAGGGAAATTTTAACTTCTCCAGTTTAAGATAAACCTAAAAATGGATATGTAGAATTAAAGGGTTATTAATACTTAAtctgaacaataaaaataacctttGTATCCAAATATAGCATAGTTGAAAAACTAAAAGcacatacaaaatatttgtgtgtgtgtgtgtgtgtgtgtgtgttcttctcaGGATATTAGAGAACAACACAACTTAACATGTTA
>XR_006251770.1
TTGTGATGAGCACAAAGTGGCGGAGTGACGAATAGGGCCTCAGAGTAATAAAACATTCACTACATCGCTGCCAAACGGCCACGGTGAGCCACTTCCTCATGGAGACACGATTAACAAAAGGAAAACCTCTCAGAAAGAAGCATTGGAATACTTGCTAAAGACGAATCGCACTGCCTGGATTTCTGCTGGAGTTGTAGCGTCACTTTATCATTTAGGTCAAACGAAACTAGGCCACCCAGTGAGACTGTAAGGAAATCACAGAAAAGTGGATCCAAGGGCCAAAAAGAAAAGCGATCCTTTGTTTTAGACAAACCGTTGCTCAAGGTGACCTGAAGCAGTTTGTTTTCCATAAGATGGATAAGTGGGCAACATCATCCAGCACAGCACAGGGGAATGAGAGCTCGTCTGCCCCAATCATATTTTCTACCCTGTCTTCACGGTAAACACCAATCTGTGGGACCCATCTAGGACGAACTAGGATGCATTCACGAAGACATTATCCAGACTAAACACACTGCCCAGAATGTTTCAAGCCTCTCAGAAGAATAACTGTATATCAATAACAGAGATTATGGAGGTATAtgattttcatataatttatatttatatgtatttatgtctatctatctatctggttGTGTTGTTCTGCAATACCCTGAGACTGTAAAGCATAAATCAATCTCGCGTCTGTAAATTTGTCATCTTTGCATTGATATGTCATGTGAGCAGTACACAATTTCATGAGGCATAAGGGTCTGAACTGAGGTAGCACATTATGAAATGGAATGTTTTGATACACATTTTAGttggtcattaaaaaaatgaatcgttttGTGGTATCCTGGGAAACAAGGCCAAGGGAAATTTTAACTTCTCCAGTTTAAGATAAACCTAAAAATGGATATGTAGAATTAAAGGGTTATTAATACTTAAtctgaacaataaaaataacctttGTATCCAAATATAGCATAGTTGAAAAACTAAAAGcacatacaaaatatttgtgtgtgtgtgtgtgtgtgtgtgtgttcttctcaGGATATTAGAGAACAACACAACTTAACATGTTAGTTAGGacgttagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagagacataATAGacacattttgcatgtttattttgtaaaccttacacttaaaaattgtatttacagtTAAGGAAAAAGCCTGAAGAAGAATGAAATTGGTATTAAGGTCACCAATAAAAGCATGCTCAGATCAGACAAATTATAAAAACTCCAGTTCACTTGAAT

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function

KEGG:

id description
ko04978 Mineral absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU106560 False 1081 lncRNA 0.39 3 20297199 20302436
XR_006251770.1 True 1342 lncRNA 0.37 3 20296930 20302428

Neighbor

gene id symbol gene type direction distance location
tfpia LOC107602164,LOC107728931,LOC107714394,LOC107660650,LOC107584163 coding downstream 1552 20271220 ~ 20295378 (-)
calcrla calcrla,LOC107728927,LOC107657513,LOC107602163,LOC107714396 coding downstream 26398 20248988 ~ 20270532 (-)
obsl1b obsl1b,obsl1,LOC107660652,LOC107602158,LOC107657519,LOC107728922,LOC107714352,LOC107584169,LOC108423904 coding downstream 267125 19997475 ~ 20029805 (-)
wdr75 wdr75,LOC107660592,LOC107714378,LOC107728907,LOC107657531,LOC107602136,LOC107565028 coding downstream 530137 19750542 ~ 19766793 (-)
LOC122352057 NA coding downstream 559719 19736033 ~ 19737211 (-)
LOC122351553 fkbp7,LOC107562709,LOC107717008,LOC107657501,LOC107584168,LOC107714366,LOC107698996 coding upstream 98948 20401384 ~ 20403699 (-)
LOC122351723 ttn,ttnb,LOC107698997,LOC107714355,LOC107601612,LOC107716993,LOC107657493 coding upstream 108959 20411395 ~ 20417109 (-)
LOC122351724 ttn,ttnb,LOC107657493,LOC107601612,LOC107716993,LOC107698997,LOC107714355 coding upstream 115436 20417872 ~ 20421682 (-)
LOC122351551 ttn,ttnb,LOC107698997,LOC107601612,LOC107716993,LOC107657493,LOC107714355 coding upstream 119246 20421682 ~ 20423199 (-)
LOC122351725 LOC107714355,LOC107698997,LOC107601612,LOC107657493,LOC107716993 coding upstream 120477 20422913 ~ 20426727 (-)
G71919 LOC107728915 non-coding downstream 78883 20215420 ~ 20218047 (-)
G71727 NA non-coding downstream 355383 19887175 ~ 19941547 (-)
G71732 NA non-coding downstream 374239 19916199 ~ 19922691 (-)
G71692 NA non-coding downstream 505370 19791247 ~ 19791560 (-)
G71645 NA non-coding downstream 584746 19709384 ~ 19712184 (-)
G71924 NA non-coding upstream 76216 20378652 ~ 20389699 (-)
LOC122351562 NA non-coding upstream 131680 20434116 ~ 20434969 (-)
G71940 NA non-coding upstream 201832 20504268 ~ 20508702 (-)
LOC122351561 NA non-coding upstream 299548 20601984 ~ 20602557 (-)
LOC122351564 NA non-coding upstream 330257 20632693 ~ 20637422 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 403615 19881550 ~ 19893315 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other downstream 444305 19833920 ~ 19852625 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other downstream 467455 19796252 ~ 19829475 (-)
ankar ankar,LOC107728908,LOC107660654 other downstream 565136 19719942 ~ 19731794 (-)
LOC122352185 NA other downstream 1727048 18569755 ~ 18569882 (-)
G71938 nab1,LOC107565022 other upstream 186728 20489164 ~ 20503890 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other upstream 1406852 21709288 ~ 21726820 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other upstream 1869027 22171463 ~ 22223667 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other upstream 1994571 22297007 ~ 22511307 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 3627771 23930207 ~ 23931329 (-)

Expression


Co-expression Network