G71938 (nab1,LOC107565022)


Basic Information

Item Value
gene id G71938
gene name nab1,LOC107565022
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20489164 ~ 20503890 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU106614
AGCTTGCCAAGATGATCAGCCACATCTTCGACATGAGCGACGAGGATCCGCACAGGAGGAGGAAATACGCAAGTATAGCGCCATATATGGGAGATTCGACTCAAAAAGGAAGGATGGAAAGCATCTGACTCTGCATGAGCTGACAGTGAATGAGGCTGCGGCACAGCTCTGTATGAAGGAGGTGGCCTTGCTGACTCGCAGAGATGAGCTTTTTCGGACTGGCCCGTCAGGTTTCCCTGAGAGGTCACGTACAAATACACCTACAGAACCAGCAAATCTCGATGCGGTGACAGAGATGAGCCGTCGCCCAAGAGAATTAAAACCGAGGTTCAGCTGGAGCGTCTGTTGGCCAAGCAGATGGAGATACTGCATGACGCTGCGGCGCAGGATAGACTGCAGGCTCTAGAGTGGAGGGTTCCACCGGGGCCCTACAAACACAGCACAGACAGGCAGAACAGCAACGGGCTCTCTGCCGACAAAAACACTGACCAGCAGGGAGAGAGGCCGCTGAATCTGAGGGTGACCAGCCAGAGGACGAGTGCTTCTGACGGAGACACAACTCTTGGAAAGCAGCTGGCCAATGAGTTAAAGAGGCATCATCACGCTAATGCAGAGAGCAAGACGTCAGCAGCTACAGAAAACGGAGGAGATGCATCTTCACGTGCCCTCAACCTCTCTGAAAAGAAGACCATCAAATCGGAGCCGGAGGATTCCAGATAGCAGCCCCGAATGCTTTCGTCTCAAACCTACAACAATACACGTCGTCTGTCAGTGAATACTAAACAAGCACAACTACAGTAGAGCCTTAACAACCAATGTTGCCTCAAAATagagtttattttagtttctcgccatttttgtttttgccaaagCACCTAGAGCCCTTATTTTCATCCTCCTGAGTAAATTCACACTGTTTGTGCTGTCACTGACTGTACTAGTTTAATTCTCGCTAGCTCTCATCACTTGTTTTTATGCTCTCCTATCGGTGTGGACCGCAAAGTCCGATATTTGTACATACATGGAAAATGTCTGTTTGAAAAtggttaaatgttatttaaatacagtatgtgttgtatgtatatatgaatgcatgtaaaatatCACTGAAACGGAGGgatgcagtgtttttaaagttgttAGTAAGCAGCTGTCGCCTATTTAAGTGAGCCTCCCGGATTGAGCTTCTCCTTAAAGACCCCATGCAATCGTTTTCATTTCCTGTATTTCCTATTATCAAATGacattttgcccttttttttaaagagccgGTAGGCTTTATTTACACCATaaacagtaatttgttactttCTATTGCTACTTAATAGCTGGTGGTATTGTTAACAGGAGCAATGTTATAATTCTAGAGAGCATTgtattcaacaaaaacattaggGCTGCGCCatgtatcaaaatattataGATATTATGTACGGCTAAATGCATCAAATCAACAAGGCTGTTATTTTTAGAGTGAACTCATTTGCacaagtaaatgtaaattaagacgtaaatattagtattgtatTTCTACAGTATTTAAAGgggtattttattaaatactctctttaattaataataaataagtattaTTGCAACATTTCGTATTTTAAGTGCAGTTATTAGGCCTGGGCAACGATTAATTGCacccaaaatatataaatagaaatgatatgaatataattatataaatgtaaatcttta
>TU106615
AGCTTGCCAAGATGATCAGCCACATCTTCGACATGAGCGACGAGGATCCGCACAGGAGGAGGAAATACGCAAGTATAGCGCCATATATGGGAGATTCGACTCAAAAAGGAAGGATGGAAAGCATCTGACTCTGCATGAGCTGACAGTGAATGAGGCTGCGGCACAGCTCTGTATGAAGGAGGTGGCCTTGCTGACTCGCAGAGATGAGCTTTTTCGGACTGGCCCGTCAGGTTTCCCTGAGAGGTCACGTACAAATACACCTACAGAACCAGCAAATCTCGATGCGGTGACAGAGATGAGCCGTCGCCCAAGAGAATTAAAACCGAGGAGGGCTGTTTTGACCTCCAGGAGGCGCTGCAGGCCATTCACATGCGCCAGGAGACCTTTAGGAGCAGCTAGCCCACGCCAGATCTAAAGGAGAGGAGACGGTTGGGCGGAACATCCAGGTTCAGCTGGAGCGTCTGTTGGCCAAGCAGATGGAGATACTGCATGACGCTGCGGCGCAGGATAGACTGCAGGCTCTAGAGTGGAGGGTTCCACCGGGGCCCTACAAACACAGCACAGACAGGCAGAACAGCAACGGGCTCTCTGCCGACAAAAACACTGACCAGCAGGGAGAGAGGCCGCTGAATCTGAGGGTGACCAGCCAGAGGACGAGTGCTTCTGACGGAGACACAACTCTTGGAAAGCAGCTGGCCAATGAGTTAAAGAGGCATCATCACGCTAATGCAGAGAGCAAGACGTCAGCAGCTACAGAAAACGGAGGAGATGCATCTTCACGTGCCCTCAACCTCTCTGAAAAGAAGACCATCAAATCGGAGCCGGAGGATTCCAGATAGCAGCCCCGAATGCTTTCGTCTCAAACCTACAACAATACACGTCGTCTGTCAGTGAATACTAAACAAGCACAACTACAGTAGAGCCTTAACAACCAATGTTGCCTCAAAATagagtttattttagtttctcgccatttttgtttttgccaaagCACCTAGAGCCCTTATTTTCATCCTCCTGAGTAAATTCACACTGTTTGTGCTGTCACTGACTGTACTAGTTTAATTCTCGCTAGCTCTCATCACTTGTTTTTATGCTCTCCTATCGGTGTGGACCGCAAAGTCCGATATTTGTACATACATGGAAAATGTCTGTTTGAAAAtggttaaatgttatttaaatacagtatgtgttgtatgtatatatgaatgcatgtaaaatatCACTGAAACGGAGGgatgcagtgtttttaaagttgttAGTAAGCAGCTGTCGCCTATTTAAGTGAGCCTCCCGGATTGAGCTTCTCCTTAAAGACCCCATGCAATCGTTTTCATTTCCTGTATTTCCTATTATCAAATGacattttgcccttttttttaaagagccgGTAGGCTTTATTTACACCATaaacagtaatttgttactttCTATTGCTACTTAATAGCTGGTGGTATTGTTAACAGGAGCAATGTTATAATTCTAGAGAGCATTgtattcaacaaaaacattaggGCTGCGCCatgtatcaaaatattataGATATTATGTACGGCTAAATGCATCAAATCAACAAGGCTGTTATTTTTAGAGTGAACTCATTTGCacaagtaaatgtaaattaagacgtaaatattagtattgtatTTCTACAGTATTTAAAGgggtattttattaaatactctctttaattaataataaataagtattaTTGCAACATTTCGTATTTTAAGTGCAGTTATTAGGCCTGGGCAACGATTAATTGCacccaaaatatataaatagaaatgatatgaatataattatataaatgtaaatcttta

Function

symbol description
nab1 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within endochondral ossification; nervous system development; and regulation of epidermis development. Predicted to be located in nucleoplasm. Predicted to be active in nucleus.

NR:

description
PREDICTED: NGFI-A-binding protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106614 False 1704 TUCP 0.42 6 20489164 20503890
TU106615 True 1823 TUCP 0.43 7 20489164 20503890

Neighbor

gene id symbol gene type direction distance location
LOC122351543 glsb,LOC107660591,LOC107728921,LOC107602138,LOC107714384,LOC107657529,LOC107565021 coding downstream 11431 20448104 ~ 20477733 (-)
LOC122351552 LOC107698997,LOC107562717,LOC107716993,LOC107601612,LOC107657493,LOC107714355,LOC108435066 coding downstream 52263 20435745 ~ 20436901 (-)
LOC122351726 LOC107698997,LOC107716993,LOC107601612,LOC107657493,LOC107714355 coding downstream 60447 20426727 ~ 20428717 (-)
LOC122351725 LOC107714355,LOC107698997,LOC107601612,LOC107657493,LOC107716993 coding downstream 62437 20422913 ~ 20426727 (-)
LOC122351551 ttn,ttnb,LOC107698997,LOC107601612,LOC107716993,LOC107657493,LOC107714355 coding downstream 65965 20421682 ~ 20423199 (-)
col5a2a LOC107584152,LOC107657512,LOC107714354,LOC107717009,LOC107699008,LOC107562716 coding upstream 190670 20694560 ~ 20718541 (-)
LOC122351555 fkbp7,LOC107562709,LOC107717008,LOC107657501,LOC107584168,LOC107714366,LOC107698996 coding upstream 225450 20729340 ~ 20731777 (-)
LOC122351538 ttn,ttnb,LOC107698997,LOC107716993,LOC107657493,LOC107601612,LOC107714355 coding upstream 233133 20737023 ~ 20746870 (-)
LOC122351730 ttnb,LOC107657493,LOC107714355,LOC107698997,LOC107601612,LOC107716993 coding upstream 243985 20747875 ~ 20750613 (-)
LOC122351731 ttnb,LOC107698997,LOC107714355,LOC107657493,LOC107716993,LOC107601612 coding upstream 246762 20750652 ~ 20751262 (-)
LOC122351562 NA non-coding downstream 54195 20434116 ~ 20434969 (-)
G71924 NA non-coding downstream 99465 20378652 ~ 20389699 (-)
LOC122351563 NA non-coding downstream 186728 20296930 ~ 20302436 (-)
G71919 LOC107728915 non-coding downstream 271117 20215420 ~ 20218047 (-)
G71727 NA non-coding downstream 547617 19887175 ~ 19941547 (-)
G71940 NA non-coding upstream 378 20504268 ~ 20508702 (-)
LOC122351561 NA non-coding upstream 98094 20601984 ~ 20602557 (-)
LOC122351564 NA non-coding upstream 128803 20632693 ~ 20637422 (-)
G71957 ttnb,LOC108435066,LOC108266290 non-coding upstream 253728 20757618 ~ 20758206 (-)
G71981 NA non-coding upstream 689175 21193065 ~ 21193278 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 595849 19881550 ~ 19893315 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other downstream 636539 19833920 ~ 19852625 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other downstream 659689 19796252 ~ 19829475 (-)
ankar ankar,LOC107728908,LOC107660654 other downstream 757370 19719942 ~ 19731794 (-)
LOC122352185 NA other downstream 1919282 18569755 ~ 18569882 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other upstream 1205398 21709288 ~ 21726820 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other upstream 1667573 22171463 ~ 22223667 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other upstream 1793117 22297007 ~ 22511307 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 3426317 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 3440095 23943985 ~ 23960325 (-)

Expression


Co-expression Network