G71940


Basic Information

Item Value
gene id G71940
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20504268 ~ 20508702 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU106617
GAGAGCTGAAGGAGCGTCGCTTACCCGCCGAACGCGCGGCACCTCGCTGGACGTCAGGTGAAGCGTCGCGTAAATCAACGGAGCGTCACATTTCAGAACTTTAACAATCAAACAAGCAGACGGCGCTTTTGGAAGAGTTTTGGTgggaaaagacaaagaaagaaaaccaaaagGTATGGCAGCGACTTTACCCAGAACCCTTGGGGAGTTGCAGCTCTACCGCATCCTTCAGAGGGCCAACCTGCTGTGCTACTACGACGCCTTTATCCAGCAGGGCGGCGATGACGTTCAGCAGCTCTGCGAGGCTGGCGAGGACGAGTTTCTCGAGATCATGGCTCTGTAGGCATGGCAAGCAAGCCGTTGCACGTCAGACGCCTACAGAAAGCTCTGCGAGATTGGGTCACAAACCCTGCCCTGTTCAATCAGCCCCTCACGTCTCTTCCTGTCTGCAGCATTCCC
>TU106618
TCCGTAGTTCAAACTACAGAGTGCGTGAGAGTTAATTCAATAAGAGAGCTGAAGGAGCGTCGCTTACCCGCCGAACGCGCGGCACCTCGCTGGACGTCAGGTGAAGCGTCGCGTAAATCAACGGAGCGTCACATTTCAGAACTTTAACAATCAAACAAGCAGACGGCGCTTTTGGAAGAGTTTTGGTgggaaaagacaaagaaagaaaaccaaaagGTATGGCAGCGACTTTACCCAGAACCCTTGGGGAGTTGCAGCTCTACCGCATCCTTCAGAGGGCCAACCTGCTGTGCTACTACGACGCCTTTATCCAGCAGGGCGGCGATGACGTTCAGCAGCTCTGCGAGGCTGGCGAGGACGAGTTTCTCGAGATCATGGCTCTGTAGGCATGGCAAGCAAGCCGTTGCACGTCAGACGCCTACAGAAAGCTCTGCGAGATTGGGT

Function

GO:

id name namespace
GO:0005770 late endosome cellular_component
GO:0044440 obsolete endosomal part cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0010008 endosome membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106617 True 459 lncRNA 0.55 2 20504268 20508659
TU106618 False 444 lncRNA 0.53 2 20504326 20508702

Neighbor

gene id symbol gene type direction distance location
LOC122351543 glsb,LOC107660591,LOC107728921,LOC107602138,LOC107714384,LOC107657529,LOC107565021 coding downstream 26535 20448104 ~ 20477733 (-)
LOC122351552 LOC107698997,LOC107562717,LOC107716993,LOC107601612,LOC107657493,LOC107714355,LOC108435066 coding downstream 67367 20435745 ~ 20436901 (-)
LOC122351726 LOC107698997,LOC107716993,LOC107601612,LOC107657493,LOC107714355 coding downstream 75551 20426727 ~ 20428717 (-)
LOC122351725 LOC107714355,LOC107698997,LOC107601612,LOC107657493,LOC107716993 coding downstream 77541 20422913 ~ 20426727 (-)
LOC122351551 ttn,ttnb,LOC107698997,LOC107601612,LOC107716993,LOC107657493,LOC107714355 coding downstream 81069 20421682 ~ 20423199 (-)
col5a2a LOC107584152,LOC107657512,LOC107714354,LOC107717009,LOC107699008,LOC107562716 coding upstream 185858 20694560 ~ 20718541 (-)
LOC122351555 fkbp7,LOC107562709,LOC107717008,LOC107657501,LOC107584168,LOC107714366,LOC107698996 coding upstream 220638 20729340 ~ 20731777 (-)
LOC122351538 ttn,ttnb,LOC107698997,LOC107716993,LOC107657493,LOC107601612,LOC107714355 coding upstream 228321 20737023 ~ 20746870 (-)
LOC122351730 ttnb,LOC107657493,LOC107714355,LOC107698997,LOC107601612,LOC107716993 coding upstream 239173 20747875 ~ 20750613 (-)
LOC122351731 ttnb,LOC107698997,LOC107714355,LOC107657493,LOC107716993,LOC107601612 coding upstream 241950 20750652 ~ 20751262 (-)
LOC122351562 NA non-coding downstream 69299 20434116 ~ 20434969 (-)
G71924 NA non-coding downstream 114569 20378652 ~ 20389699 (-)
LOC122351563 NA non-coding downstream 201832 20296930 ~ 20302436 (-)
G71919 LOC107728915 non-coding downstream 286221 20215420 ~ 20218047 (-)
G71727 NA non-coding downstream 562721 19887175 ~ 19941547 (-)
LOC122351561 NA non-coding upstream 93282 20601984 ~ 20602557 (-)
LOC122351564 NA non-coding upstream 123991 20632693 ~ 20637422 (-)
G71957 ttnb,LOC108435066,LOC108266290 non-coding upstream 248916 20757618 ~ 20758206 (-)
G71981 NA non-coding upstream 684363 21193065 ~ 21193278 (-)
G71984 NA non-coding upstream 697513 21206215 ~ 21206762 (-)
G71938 nab1,LOC107565022 other downstream 378 20489164 ~ 20503890 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 610953 19881550 ~ 19893315 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other downstream 651643 19833920 ~ 19852625 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other downstream 674793 19796252 ~ 19829475 (-)
ankar ankar,LOC107728908,LOC107660654 other downstream 772474 19719942 ~ 19731794 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other upstream 1200586 21709288 ~ 21726820 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other upstream 1662761 22171463 ~ 22223667 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other upstream 1788305 22297007 ~ 22511307 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 3421505 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 3435283 23943985 ~ 23960325 (-)

Expression


Co-expression Network