LOC122351567


Basic Information

Item Value
gene id LOC122351567
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 21233186 ~ 21245785 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU106671
gggaagactgctgatctgaccgttgtccagaagacaatcattggaggtctCGCTCTCGACATCCTATCTGTCCCCTCTGAGCCTAATCCCAGGCCGTACGCTGTGGGCGACTCGAGTGATTTCTGCAAGCTTATGGGAAACCGGTCTTTCAAACATGGATCTGCCATTCAGCAGGGCTCTCCAAGGATTCATCAAAGTCGGGATGTTTCCTCAAACGGCTGCTGTCTGTATAGCGAGTAGATAGCAAGCAGCTCGGGaagttttggaacagagccacgGAGAGCCTTTGGGACGG
>XR_006251774.1
tgtccagaagacaatcattggaggtctCGCTCTCGACATCCTATCTGTCCCCTCTGAGCCTAATCCCAGGCCGTACGCTGTGGGCGACTCGAGTGATTTCTGCAAGCTTATGGGAAACCGGTCTTTCAAACATGGATCTGCCATTCAGCAGGGCTCTCCAAGGATTCATCAAAGTCGGGATGTTTCCTCAAACGGCTGCTGTCTGTATAGCGAGTAGATAGCAAGCAGCTCGGGaagttttggaacagagccacgGAGAGCCTTTGGGACGGATGAGCTctcaaagtaaataaatggcGAGATACAAAATGTGATTGTTGGTTTTCATCCAGTGAACTGTTCTCTGGGGTTCCCAGAGCCAACAGAAACTGATCGACATGCTCCTGGTGTGGTGGATCCATCCTAGTCTTTGTCCGTCCGGTGTATATCTGATACATTTTGCTCACAAAAGTACTTTCTCCAGTTTGTTGGAGGATTTTTCACTAttgttgctgttttactgtTAGTTGAGACTATGCTgttattagatttaattatgtGTAATATGATTTATCGCATATAAATCACACAGGGTCAAAACTGCATCGCTGCAGTGTGTGCATATGCCGACGTGTCACATCCAAACTCGTGAGAGAACCTCGTATTTCACAAGGTAGCAATTTTTCTACGACTTCTTAAGATGTGATTCatatgaacacttttttttataaaaataaggtCCATTGCTAATTTAACCATTAGTCGGGGTTATTCAAAGTGTactaaatttgtgtttttagaaCTTTGACAAATATTCTGGTTCAAGTTCTCTCAACGTTCTTCCAGCAACGGTAATAGAATGCTATGTTATTACACATAGTtcatggaatgttttttttcatccccAAATCATTTGCcttatttcagaatattcaaaaaaacattcaaaagcaacaaatttcacacaaaaaactaataaaaaaatatattttttgctctaTAGCCaccatttcattaaaacaatacaatacatcatacaaaaaaaatcagtgtttaAGTCACATTTATAAGTCATAAGTAAACACTGAATGTACTATAAAGATGAACTTCATTCTTTTAACTCAAAATCTAGATCTGTGAGGTTAGACACGGCCCAAGATTTAGTtcacaaagcatttatttatttttttcatgactGACCTGTTGAGATGTTCCACACACCATTTAACATCACAGCGTCTGAAAGAGGTGCCGCTGGATGCGTGATGCTGAGAGGCAGACAGCTAATGCTGGTCTGTCATTTACATCTGACAAAGCTGTGTTTGAGAAGTGGGAGATCTGACAATTTTCATAACCCCTGCAACCTTGTGTTTGTATAAATTGAATAGTGGGCAGTTGGACCAGAGGGGACGCAGCTGCTACCTGAACAGAATAGCAATGCTTATTTAGAAGTCTGCCACCACTCTGTGGACGACCGCAGCGCTTCCCTTCTTTCTAAATGAACGGGGGATGTGATGAAGTGAAGCAGCAGGAGGTGAAACTGTGGGAAGAACAGGCCGACGTTTAgcagacattttaattaaattcaggaAACGGCAGCGTTTTGAACACGCTGTATCAACGTTTTTATGCATAATATCTGCAGCGCATGAGAACAAAATGCTACCTGGTTTATTAAACATCTGA

Function

GO:

id name namespace
GO:0004962 endothelin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106671 False 295 lncRNA 0.53 3 21234579 21245785
XR_006251774.1 True 1665 lncRNA 0.40 3 21233186 21245762

Neighbor

gene id symbol gene type direction distance location
LOC122351741 LOC107704498,LOC107549376 coding downstream 62411 21168939 ~ 21170775 (-)
LOC122351738 ttnb,LOC107698997,LOC107714355,LOC107657493,LOC107601612,LOC107716993,LOC107562704 coding downstream 462033 20769745 ~ 20771153 (-)
LOC122351733 ttnb,LOC107698997,LOC107716993,LOC107657493,LOC107601612 coding downstream 472159 20760046 ~ 20761027 (-)
LOC122351732 ttnb,LOC107657493,LOC107714355,LOC107601612,LOC107716993 coding downstream 476073 20755896 ~ 20757113 (-)
LOC122351558 LOC107716993,LOC107698997,LOC107601612,LOC107714355,LOC107657493 coding downstream 480206 20751269 ~ 20752980 (-)
LOC122351560 ttn,LOC107657509,LOC107714399,LOC108435065 coding upstream 498258 21744043 ~ 21896047 (-)
LOC122351744 ube2e3,LOC107601610 coding upstream 651400 21897185 ~ 21907713 (-)
neurod1 neurod1,LOC107601389,LOC107755376,LOC107676085,LOC107716998,LOC107601620 coding upstream 979773 22225558 ~ 22228499 (-)
LOC122352034 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC106582264 coding upstream 1095623 22341408 ~ 22398653 (-)
LOC122351832 NA coding upstream 1236441 22482226 ~ 22484709 (-)
G71984 NA non-coding downstream 26424 21206215 ~ 21206762 (-)
G71981 NA non-coding downstream 39908 21193065 ~ 21193278 (-)
G71957 ttnb,LOC108435066,LOC108266290 non-coding downstream 474980 20757618 ~ 20758206 (-)
LOC122351564 NA non-coding downstream 595764 20632693 ~ 20637422 (-)
LOC122351561 NA non-coding downstream 630629 20601984 ~ 20602557 (-)
G72024 NA non-coding upstream 183343 21429128 ~ 21430341 (-)
G72026 NA non-coding upstream 188072 21433857 ~ 21436278 (-)
G72260 ttn.2,LOC107714399,LOC107657509,LOC107601611,LOC108435065 non-coding upstream 362009 21607794 ~ 21615684 (-)
G72372 NA non-coding upstream 486523 21732308 ~ 21732996 (-)
G72377 ttnb,LOC107716993,LOC107698997,LOC107714355,LOC107601612,LOC107657493 non-coding upstream 490656 21736441 ~ 21737522 (-)
G71938 nab1,LOC107565022 other downstream 729296 20489164 ~ 20503890 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 1339871 19881550 ~ 19893315 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other downstream 1380561 19833920 ~ 19852625 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other downstream 1403711 19796252 ~ 19829475 (-)
ankar ankar,LOC107728908,LOC107660654 other downstream 1501392 19719942 ~ 19731794 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other upstream 463503 21709288 ~ 21726820 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other upstream 925678 22171463 ~ 22223667 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other upstream 1051222 22297007 ~ 22511307 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 2684422 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 2698200 23943985 ~ 23960325 (-)

Expression


Co-expression Network