G72472


Basic Information

Item Value
gene id G72472
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 21995935 ~ 22056835 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU107238
CTGTCCTGATCTGGGGTGGTTAGGAGTGTTAAAAATCCAGTTGAAATGGAGCCGGGAAGACGACGGGCTCCGGCCGAGCTGTGAACATTGGAGAGTAGGAAGGAGAGGAGGCGCTGCAGTTTTACTCGGGGCCGACGGGCGGCGCTGTACAGCGCTTGGACATAAGCGTCTACCGCCTCGGATGGTCCCACACAACCTTTAAACCGACGTGAAACTGTATCGCCTCACGATACGCTCCACCTGAGCGGAATTTAAAAACCCGTCACCCTGCGTGTGAAGAAGACGTCGGCGGCGACCGTCGTGTCGCTTGTCGAGAGCGAGGCGGGATGTTGTGGCGTCGGGAGGAAGTTTTgacatgttgttgttgtgaGGGCTCCATGGTGAGAGCAATCACCTCACGGAAACTTTGAGCGTGGGTGAGAAGTTTGGCTGGAATTCCGTTGCAGGAAATCCGCTGTCCATTCGCATGACTCCAGAGGCCGAGACCCAGTTGAAATGGATGGCAGCATCTGAGTTTCTGCTCTTCACGCTCAACACTTCGGAGACTGATTGGACATCCTCCATGCTTAATGGCCGTCGGCGGTCCATTCATACAAGGTGTTTCCGTGAACGGCCTTTTGGAAGAATCCCATCAGGAAAATCCAAAACAAGGCACATTGTGTGGCGGCCCCTTGTGGCTGGTGTAATTTGAACGGACAGCGACGTGAATGAGGCCCATTCTGCCATAGCCGCTTTCATTTGGCCATGATGAATAGCACTCTGTGCCACAGGAGAGCGGTCACTCACACTGAGGTTCACGGCCGGCCGGCAGAGGGCTTTTCGTGCCGTTACAGGTTATTAATCGGCGGGTCGCTTCCCTCCGGTGCTTCCTGCCAGAGATGGAGGACTTGACATGGCCAGAGGTGCCATGCTGGAGGAGGGTATCGCAGTCTGGGAGCTGGGCCTTCACATTCAGCCTGGAACAAAAGGCTTTTCTTGTGATAGATTGGCAGAGCTTTTCTCTACGCCTCTGCCTCCACAGGCCTTTTCTGCCCATTTCTTTAGTAATGCTCTTGTTAGTGCACCGCAGTTTCCTGACCGCTGGTTTCATTTCTggctgtagaaaaaaaaaaatctacttaagAGTGATTCATTTGATGTCTTGTGCTTTTTTTCAAGGTGAATTtatgttaacatttttgggtaaactaccCCTTTATTCAGCCAGaactatgaatatttaatgctaTCTCACGACCTATTTGCAC
>TU107239
gctgaattaaaaaatgacatttaatccTCAAAGGCAAACGGATAGATTTGTCAGCTTTACCTCTTCGCGCTGGAGGATAATTTGGCTGTTGTTTTGCTGGACAGTTTGGTGGATTTCTTCTGCTGTTGTGGAGGCGTGGGTTGTTTTCGCTCCTCTTGTTCTTCTGGTTCTGGCACCGGAGGATCTCTCTGATCCGCATCGGAACTGCCGCTGCTGGTGCTGGGACTTTCATCATCTGACCGTTGTCTTTCACTGGACATTTTCCACCTTTGTAAAGGACAACAAGAGGTTCTGAAGCAGGGCTGGCTGCGATCACAGGAGTCTCCTGGGGTTTAAGCAAATCTCGAATTTGCTCGGTGGAAGCTTAAACCCTAACCTCAAGGCCGCCCGGTACCCTAACCCTTACGTTTCTAAATACAAACAGAAGCCAAAAAGGTGCAAGCGGCTGAGCTTATGAGGGGGAAACGAGAAAAACACACGGCGGTTCCAGCAGAATCTGTCGCTGAGAAGAAGGAGATTTCAAGAGCTGCAAAGGAAAGCAATAATTGCACCTATTCGCAGCATGTCCACCCCCTTCACTTTAGGAGAACGAGGCGATATCGCGAGCGGATTGCGAGGAAAAATCGAGCCGTTTAACGCACGCCGGGACGAAAAGATTCAGATTGGATCTTTTAAAATCCTTTGTAAGAGGTTTGTTATGGTAGGAGGCACTCCAGTATCAGCATGGTGTACCAACTGATGCGTGAAGTCAGTTTCGAGCTCCCCTCTCTTCAAACCTGAAAACACTAAGAAAGGACGATGTTACCCCGCCTAACGTGGACTCTACGAGACCCTTAGAGCTTCTTCTTTACCTTAGACGCGGTCCTGTCCTGATCTGGGGTGGTTAGGAGTGTTAAAAATCCAGTTGAAATGGAGCCGGGAAGACGACGGGCTCCGGCCGAGCTGTGAACATTGGAGAGTAGGAAGGAGAGGAGGCGCTGCAGTTTTACTCGGGGCCGACGGGCGGCGCTGTACAGCGCTTGGACATAAGCGTCTACCGCCTCGGATGGTCCCACACAACCTTTAAACCGACGTGAAACTGTATCGCCTCACGATACGCTCCACCTGAGCGGAATTTAAAAACCCGTCACCCTGCGTGTGAAGAAGACGTCGGCGGCGACCGTCGTGTCGCTTGTCGAGAGCGAGGCGGGATGTTGTGGCGTCGGGAGGAAGTTTTgacatgttgttgttgtgaGGGCTCCATGGTGAGAGCAATCACCTCACGGAAACTTTGAGCGTGGGTGAGAAGTTTGGCTGGAATTCCGTTGCAGGTGGGAGTCCCAGTACAGCACTGCATGACTTACTGCTTGACTTCTCTGTCGTCTGCTACACTTCATTCTGTATGACACCTCGGGAGCCAATGAGTGTGTACATCTCTATTCTGTGTGCTCCTCTTACCTTTCTATAGTCTTTATTACTGTTTAGTACTTTTCTGCACGAGGTCGATGATATATATGAATCAATGTATAGCGCGCTACTGTAGTCGTTTTACATTATTGCACTAGTCTAAAGTAAactctgcttattaatagtgcATAATTGCACTGTATTCTGTATTGATATAAGGTGTACTTCTCTATTTTATAATCTGTTTTACTTCTCACTTGTATATTCTGCACCAATTCTATATAGTATATGCTTTCTCTTCTGTGATGTCTTCTGCTTCGCTTGTTTGTTCACTTGTTTCTATTTACTGTCTGTCATCTATAAAATCTCGATTGTCTGTAGtgctatataatatatgacTGCTATTGAATTTCTGTATAATCATTCATTTATCCTTCTCCGTGAAATTAGCTTACTGTAGTCTACATTACATTCAGCTCAATAAAAGTGACTTCAT
>TU107240
CTGTCCTGATCTGGGGTGGTTAGGAGTGTTAAAAATCCAGTTGAAATGGAGCCGGGAAGACGACGGGCTCCGGCCGAGCTGTGAACATTGGAGAGTAGGAAGGAGAGGAGGCGCTGCAGTTTTACTCGGGGCCGACGGGCGGCGCTGTACAGCGCTTGGACATAAGCGTCTACCGCCTCGGATGGTCCCACACAACCTTTAAACCGACGTGAAACTGTATCGCCTCACGATACGCTCCACCTGAGCGGAATTTAAAAACCCGTCACCCTGCGTGTGAAGAAGACGTCGGCGGCGACCGTCGTGTCGCTTGTCGAGAGCGAGGCGGGATGTTGTGGCGTCGGGAGGAAGTTTTgacatgttgttgttgtgaGGGCTCCATGGTGAGAGCAATCACCTCACGGAAACTTTGAGCGTGGGTGAGAAGTTTGGCTGGAATTCCGTTGCAGGAAATCCGCTGTCCATTCGCATGACTCCAGAGGCCGAGACCCAGTTGAAATGGATGGCAGCATCTGAGCCTTCCAGCCCAGGAGAAATGGAGCAGCGTG

Function

GO: NA

KEGG:

id description
ko04072 Phospholipase D signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU107238 False 1247 lncRNA 0.52 3 22031137 22055031
TU107239 True 1882 lncRNA 0.46 2 22054014 22056835
TU107240 False 545 lncRNA 0.56 3 21995935 22055031

Neighbor

gene id symbol gene type direction distance location
LOC122351744 ube2e3,LOC107601610 coding downstream 88222 21897185 ~ 21907713 (-)
LOC122351560 ttn,LOC107657509,LOC107714399,LOC108435065 coding downstream 99888 21744043 ~ 21896047 (-)
LOC122351741 LOC107704498,LOC107549376 coding downstream 825160 21168939 ~ 21170775 (-)
LOC122351738 ttnb,LOC107698997,LOC107714355,LOC107657493,LOC107601612,LOC107716993,LOC107562704 coding downstream 1224782 20769745 ~ 20771153 (-)
LOC122351733 ttnb,LOC107698997,LOC107716993,LOC107657493,LOC107601612 coding downstream 1234908 20760046 ~ 20761027 (-)
neurod1 neurod1,LOC107601389,LOC107755376,LOC107676085,LOC107716998,LOC107601620 coding upstream 168723 22225558 ~ 22228499 (-)
LOC122352034 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC106582264 coding upstream 284573 22341408 ~ 22398653 (-)
LOC122351832 NA coding upstream 425391 22482226 ~ 22484709 (-)
dusp19a dusp19a,dusp19,LOC107739447,LOC107699004,LOC107601374,LOC107601606,LOC107755360,LOC106586411 coding upstream 481140 22537975 ~ 22541710 (-)
dnajc10 dnajc10,LOC107755373,LOC107739439,LOC107699025,LOC107676092 coding upstream 540993 22597828 ~ 22610069 (-)
G72479 NA non-coding downstream 52945 21942567 ~ 21942990 (-)
G72474 NA non-coding downstream 88550 21906999 ~ 21907385 (-)
G72377 ttnb,LOC107716993,LOC107698997,LOC107714355,LOC107601612,LOC107657493 non-coding downstream 258413 21736441 ~ 21737522 (-)
G72372 NA non-coding downstream 262939 21732308 ~ 21732996 (-)
G72260 ttn.2,LOC107714399,LOC107657509,LOC107601611,LOC108435065 non-coding downstream 380251 21607794 ~ 21615684 (-)
G72493 NA non-coding upstream 43191 22100026 ~ 22100238 (-)
G72500 NA non-coding upstream 66355 22123190 ~ 22123408 (-)
G72502 ppp1r1c,LOC107699022,LOC107601387,LOC107716995,LOC107755374,LOC107676093 non-coding upstream 229939 22286774 ~ 22295068 (-)
G72537 pde1a,LOC108443795,LOC107716994,LOC107699023 non-coding upstream 250347 22307182 ~ 22310478 (-)
G72535 NA non-coding upstream 254243 22311078 ~ 22458758 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other downstream 269115 21709288 ~ 21726820 (-)
G71938 nab1,LOC107565022 other downstream 1492045 20489164 ~ 20503890 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 2102620 19881550 ~ 19893315 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other downstream 2143310 19833920 ~ 19852625 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other downstream 2166460 19796252 ~ 19829475 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other upstream 114628 22171463 ~ 22223667 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other upstream 240172 22297007 ~ 22511307 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 1873372 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 1887150 23943985 ~ 23960325 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other upstream 2163687 24220522 ~ 24280708 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038095 NA non-coding NC_007120.7 CM002893.2 43711688 ~ 43798248 (-)
grasscarp (Ctenopharyngodon idella) CI01000009_13394582_13476351 UBE2E3 coding CI01000009 null 13392306 ~ 13476807 (+)