G72502 (ppp1r1c,LOC107699022,LOC107601387,LOC107716995,LOC107755374,LOC107676093)


Basic Information

Item Value
gene id G72502
gene name ppp1r1c,LOC107699022,LOC107601387,LOC107716995,LOC107755374,LOC107676093
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22286774 ~ 22295068 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU107272
ATCGAGTATCTTTTTGCTGAATTCAAAAGGCTGACACGAATCAGGTGATCAAAGCTCTTCCTAGCATGTGTTGTGTATTATGTGTTTGTGGCGTGGTCCTACCAGGGACGAAGGGTGGCTGGTGCTGGTACGGCGTGTCTTTGCGTCGGGGCGACAGGTCTCCGGGTTCCTCAGACAGTGTGTCCAGGTGTTTTTGAGAGAGTCTCGGAGGATGATGACTCTCTCGTTCCTCTTGCTGGCTATCGCTGTGCTCTCTACCTGCAGGACGAAGACAGCGTGAGTCCCAGCATGCACCTGCCCCTGTGCGACCTGACTTACCCATCTAGGTCCAGCCGACTAGACTAAGGCAGTTCAAAGGTTGATTGCGATCATCTCGATGCAGAAGAGTACAGACGATTAGCAGGTTTGATATGTTTTGGCGAAGCGTGGTATTTTTTGAGCAAGCGCAACtgcagaatgaatgaatattttctaAGTTCCATCTGGACAAGCTTGCTGGCTGTCTATATAATGCACTTGCACATATCTACTTCAATTTTTACGGTCGCCATAATGAATGAGGTGATTTTTCACAATTATGGTTTGCTGCTGCTTTTATGCACAGAAATaacatatttcacttttaagcCCCGTTGCATGTCTTATAGCAAAATAACACATAGCGTGCTGCAAGGATGACATGTTTTTTTAGGACAAGGCTTCGAAATGAGTTTGCGTTTTAATACTTTCAGGTGTTTTCATTGCCCTGAAGTCAATGCATCTTTTTAATGGCTTGATAAGAGAAGGTTTGTGATTAACGCAAGGTAACACGTTTTATTCTAAAACGTAAAAATGCATCAGTAATACCTCCTCGTTTTTTGAAGGTTTCGTTTGTTGTGAAAAAGTTGGCCTCAAAGTCATTAAACATCATCCAGACGAAGAGATTTTTGAAATTATTGATGAAGCTTGATAGTGGTCACATTGAAGTCAATCTGCCTTGAAGTAGGGTTTTTGTTAAAGAAATCAGGGTGATGCTAACTTACAAAAATGCCTGCCAAAAAAAGTCATCATTGCAGTGCTCTATTcatccttcatttatttatctaagaCTGAGACATTTTGGAAGTGGGAGATGAAAAACCAAACGGACAGTAACAATAGATAAACAGCACTTACTCAAAATTATTTActtcattccttttttttttttttttatttcaagctccaaaaagttttatttcattgtctCTACTTCACAAGTAAATCCAAACCCACAAAGAAATGATTACAACCGATCCGAAAGTGCCAAAAATACGCCGCCCGCATTTTACAGATATACATATCGGAAATATTTCAAATGCCGTTTtatcaaatagaaaaaacaaacaggacAGATCATTTTGGTACAGAGTTCAACGTGAAGAACAAGCATTACACTtcacacaaataaaactgattaaagGAAGTCATCACTGGAACTTAGAAAGAGGTGAGAAAGTACAATGCGTGTATTTAGAGAAAGCGTGTCTTCTTATTCAGAGTCCAAAGAGTGGAAGGGACAGTAAATGATTAGGAAGGGTCTATGGTGTGCCAGGTACGTTATTACGGCTATCGAGAGACAGATGAAGGACTGCTCAAGTTTTTCTGCTCACTTCCTGAGGTGTCTGCTGTGTCTCCCCCGGCCCCACTGCTGCCTGGCTGCCCCTCAGTACTGACATAAGACTCATTGCCATTGGGCTCTGAGCTGTTGTGATTGGCCCACTGAGCTTCGCTGGCAAAATGCTGTGCTGTGATTGGACTGGGCGTGTCTGGGCTGTCAGAGAGCCCCGCCTCCTGCTGCTCCTGCCTCTGAAAGTGCTGCTCCACCACCAGCTGCAGCTCTGCACTCAACACAGGACACACAGCACAGCGCCACACAGTGGACACAGGCTATCAGCGCAGGCGTGCAGTGTGTGGAACAGTGTGAGACCTCTGAACCCCATCCAAATGTATGACATCAATCAAATACACTCAACGGGCGGCTATGgaatggagaaaatgaatgacttGCGAGATGTATGCATGCTATGTatctaaaaccaaaaaaatttgCTCTCACAAAAAGACAAGTATTTAgttattgaaaaaatgtattgcagcTTTTAATgggacagttcacctaaaaatgcaATTCTGTCCTTAATTACTTATGGTCATGTCGTTCCAAGCCCGTAAAATATtggttcatcttcggaacacaaaaaaatatatttttgatgaatgccGAGAGCTCTCTCGGACCCCctcatagacagcaaggatccaAATACAATCAGAGCTCAGAAATGTAGCCAGgagttcattaaaataatcaatgaGAATacccccaaaacaaacaactatgcagaattcatcaaaaatattttcattttcagaagatgaatgaaggtcttacaggtttggaatgatatgaaGGTGggaaattaatgacagaatttaaatttttgggtcaACAATCCCTTTAAAACTATAAAGGTTTGTTTCAGAACTTGGGCTTACGGGCTGGGTAATatagtgcaaaaataaataaataaaaaataaaataaatttgtttattaattttatattattcattattataacaaatataataataaactcgCCAATGATTACACCGTTCTGTGCGTATTAGCAACAAGCCCCAACATAAGGACATTTTTTGAAATTAGTTTAATGACAAGTTTTTTTAGTTGAAATAATAGCCTAAAAcctcattaaaatatttctcagtgcttcagtttatttcttcagaaagaaaatgatgcaaataggaaaaataaaatcatgaataCTCAATATACTCAGTGTTAGATGGGCTGACATCAGTTTTGATCAACAGCACTAAATTTCTTGGTGACGTGATCAAAGTAAATGGCTAATGCACTGTAAGCTGATAGCTCTCTCGTGAAGCAGGTCTGAGAGCATCTTAAGAGCTTTCAGAAGGTTTCATCTGCAGACCTCCAAATGTACTGTCTGATGATGATGCCTAACATACTCAGCTAGAACCCCATAATTACCAATGTGTTAAAAAGATTGTTTAAAAAGAGCGAATTCATCATAACCGAACTACCTTgcgaaattaaaaaaaaaaactacattaattCAAGATGCAAAACGTTGAAAAGTAAATCAGGGAATCCTGAATAATAAACTACTTCTAAGAAAACAGAACTCTGATCTAAACAATACGCCGCCGCAGATAtaaatgagcttgtttcttcgTCTGAACAGATCTGGAGAATTCTAGCATTGCATCAATTGCTCACCAACAGatactctgcagtgaatgggtgccgtcagtccGAACAGCtctgaaaaacatcacaagcGATCCACACCACTGTAGtccatcttgtgaagtgaaaaggtGTGCTTTTACGATTTATACGATTTTcattgaagaaacaaactcatctacatctagGATGACCTGAGAGAacgttttcagcattttttttgctgttgggCTGAATTCTAACTTTACATATACTTTTGTAGAAGCCGCAAATCtcgaaagaaagaaattaatactttttttttttttggcttccaACCATTATGATTGATCTCAGAGCTGGCTGGCTGAACTCTTAATTgaagagaatttaaaaaaatccagagCGAATGGCGAAAACACTCCCGCAATCAAGAGCACTAAAAAGTGGGCACTCAATGAACCGCTACATACACTCAGCAGTTTTGCCCTGGAATGATTTCAGCTCGCCACTTTGTCGCTATCCGAAGCAATCTTCTCAAAACTTTTACCAATCTTTTCACAGACAAGAGACCCCTACTTACGCAAACGAGGCTCTGACACCATTGAACCACGACTAGCCCACACAAGCGCAGCACGCTGGCTTGGCATCACTGCAAATCAGATTGCTTTAGCTGTTTCTGCCCTGCACCGACCGAAAGGATGCTGAGTGTTCGTTCAAAACTGCTCTGCCAGGCTGTCCATTTGAGGCCATCTCTCTAGAATGatgcatctctctctcctccccccACTCCAATCAATAGCTCAAGCTAATGTGAATTTAGCACGTCCGTGCCAGGAAATGGCCTTGTCTATGAGTCAGCGAGGCGGACTCCGCCGCTATCCCTCCCCCATCTCATCGCCTTAAAACCTCAACTTTGACGCAAACGTGGCCTGGTGGTCAGACAACCTGGGTTTGAATCCAGTATAGGTCATTTCCAGCCTCCTACTGCCCTTGTGATTGGCGAAATAATaagcaaattattaaaactcTACTTTTAAGAGTGCACGTGCGCTGATAAAAAAAACGATGTCTGAAGAAAGATTACACATTCGTCACATGTGACGGGGTTTCTTCAGGGTTTATGAAAGTAAATTTAAGACTCTTTCAAGACGacgtaaatttaaaaattaaaaattattattataagtttttaaatttaaggTATAATTAAAAGGGAACAAAATATGCCAATATGTTGCTAAATATAATGTCAAGACTCTAGAGTGCACACAATGAGCTGCATTAACAACACtaaaagtttgaaaatacaACTTTCACTCCGAATACCTCATTGTGCTAAATGAccaaaatgtaatgcaaaattagattcttaaatcaaattaatttaattattgataAGGCTTATATAGCTGTGCAAACAACCACTAAAATAGTTTAACTGTGACTTCCGATCAAACTGCAATAAAGGGATGTTTCCAGTGGAAATGTGATATTCTACATTTACCTGAAAAACATAGTGACAAGAAAAAggcttataaataaataaataaataaataaataaatatcgaTAGCAATAATCAAAATGGAGTGAGTGATGATTAGAGTTATGattagaacaagaaaaaaaaattaattaaaagggaaaacacattaacagatatttgttcttgttttaagcaactTACTTAATTCTGGGAAATTTCTTAATCATATCTCCTTTTTGCTTTTCAAGTAAAAGTATCTTAATTCATGGAGGTTTAGATTTTGTAAGATTGTAAGACTTTTTCAGCAATGTTTGTTAAATGCTTTCTGCTCTGATCGAAATACTTTTAAAGCCTTCATTTGCGGAAGGGCGAATTAAGATTGAGACATTTGAGAAACTCCACAAGGAAAGAGAAACAGTGGCCACATGCGCACTGAAAAAAATTGGAGTGACAGAACCATTATAAAATTAGATTCGACGATGTATGAactatataaacacaaataaatccTAAATAAAATACCAGCAGCTGAAAATCATGAAGGagtaaacaataaatgttatttaataggAAAACGGAagtaacataaatgtaaataaaatctgaaaagctgtttactttataaataatactttactTTGGAAAATAAGCTACTACTTACAAATATGTcggattaaaataaaaatgtcttttaataaagaaacatgAATGGTCACAGGCAGTGTATTGTGTCTTTCACAGTGGGTTTAAAGTCTGAGACCACTCTGACAAATACGTATTTAGTAaccaataaatatacaaatgttctGAATAAATTTCGACAGTATTTCTAGGCCATTGATCAAATCTTTGAAAACGACCGTGTGATTCGTAgatgttctttcttttgttggAGCTCAAGATGCTCTCTGGATGATTCTCAAATCACGCTGGGAAAAACAGACGCATCTTCACTAGTGTACTCAGACTTCGGACCTCACTGCGTGTGGTTAAGAGCGGAGGAACTGTATTAATATCAGCGGCTGATCCATAAGCACGCGCGGTGTGAGTAGTCTGTTGAGTGGGCTGCATGTGTGGGTCATTGGATGCAAAACGCCGCCTCCATCGGTGAAATACGTACAGTAGTGTGAACGTTAATGGAGAAGATGGCAGTGTACTGTGGAtcatactgtactgtacacaCAGATGGCAGAGACATATCATTCCTATTATGCAATAGCTTTTTATTGCctctgtatattatttttttaaagattgaaATCATAGTAGGAGGAATTAAATAACTTCTAACATACAAAAAGCTGAAGGTTTACTTAAAACCGTCTCAGATGCAtcattaaacatgttttctgatcacgtttttttatttttacctgaaaatcaatttatagatttttttttttttttttttctgtgtcctGTCCGGTATCACTTTCCATCCTGTTAGTTCTCTGTGAAATCCTTTAAAGCAACATAAATCAGCTCCTTAATCACATGATGTTCTGGAAAATGACATAAATTTGACGTATATTTtggatatatttaaaattgattttaatttcagcttgtaaaaacatttctcatttttgtttagtttaagctaaaataagaaaaacgAAATGCACTAAAACCTATATACTTACATAAAAAATCCCGTGCAAATTACAAACACATGAAacaaagaactaaaaaaaaaaactaattatgaatattaattaaaaaagtaagtaaaataaGTAAGATTAAGAatacaaaaactttaaaaaaagtgtaacaatTAGATACATGTAGATGGAAAAGATTTATGTCCagatatacatattataaacatacattatttggatataataatatattataaatatacctACTCATATTAACTGTATACAACCAAATACTATCGGGGTTGTTTGACTCTTTTGTCTGATACTGTACAGTTGCAATATAAAAAACCCAGCATGATAAAAACGATATAATCAAAAATTTCTATGTTTAGCTCTTAATTTTCATAATTCGGTTCATTTCTTGTCGTTGTATAAATAagttataaatgttgaaattcgAGCTTCTAATTTTGGCCTTTATTCTGAAAATCCGATCCTACAAaagtatattctttttttcatgtcttACCGACCTCAAATGGTACTGCATAACAGGAATGACTCATATGTATGGGTTACGTAAGAGCCTGAAACGTCACATAATATGCAGATGGTGTACTGTATGTGGCTGGATGCGGGCCTCGTACCTCTCATGGTCGGTGGAGTGTAGACGCTCTGTTTCCTCTGGGCTGGAGACAGCTGGGCACTCTGGGCCTGGCGTGGACAGTGGAAAAGCACAGCGTGAGAGAGGGGATCTGATTTCACGCAGACTCTATTTCAGGAGCTTTGCTCCAGCAGGTAATCAATGACAACTGCATCAGAGCTCCATCCATCTCATAGCAAACCCTCTGCTGAGCATCTCAGAGAGCTCTGCAGAGAAGCAGCCGGAGGCTTAGCTTACATACCGCCACGTCCACTAAGACGGCGGAAAAGAACACTGTGTTATGTCTGATAGAGCGATGGTGGAGACAGGAGTGAGG

Function

symbol description
ppp1r1c Predicted to enable protein phosphatase inhibitor activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Is expressed in nervous system and trigeminal placode. Orthologous to human PPP1R1C (protein phosphatase 1 regulatory inhibitor subunit 1C).

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 1C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107272 True 7305 lncRNA 0.38 2 22286774 22295068

Neighbor

gene id symbol gene type direction distance location
neurod1 neurod1,LOC107601389,LOC107755376,LOC107676085,LOC107716998,LOC107601620 coding downstream 58275 22225558 ~ 22228499 (-)
LOC122351744 ube2e3,LOC107601610 coding downstream 379061 21897185 ~ 21907713 (-)
LOC122351560 ttn,LOC107657509,LOC107714399,LOC108435065 coding downstream 390727 21744043 ~ 21896047 (-)
LOC122351741 LOC107704498,LOC107549376 coding downstream 1115999 21168939 ~ 21170775 (-)
LOC122351738 ttnb,LOC107698997,LOC107714355,LOC107657493,LOC107601612,LOC107716993,LOC107562704 coding downstream 1515621 20769745 ~ 20771153 (-)
LOC122352034 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC106582264 coding upstream 46340 22341408 ~ 22398653 (-)
LOC122351832 NA coding upstream 187158 22482226 ~ 22484709 (-)
dusp19a dusp19a,dusp19,LOC107739447,LOC107699004,LOC107601374,LOC107601606,LOC107755360,LOC106586411 coding upstream 242907 22537975 ~ 22541710 (-)
dnajc10 dnajc10,LOC107755373,LOC107739439,LOC107699025,LOC107676092 coding upstream 302760 22597828 ~ 22610069 (-)
LOC122351760 LOC107755372 coding upstream 316290 22611358 ~ 22615781 (-)
G72500 NA non-coding downstream 163366 22123190 ~ 22123408 (-)
G72493 NA non-coding downstream 186536 22100026 ~ 22100238 (-)
G72472 NA non-coding downstream 229939 21995935 ~ 22056835 (-)
G72479 NA non-coding downstream 343784 21942567 ~ 21942990 (-)
G72474 NA non-coding downstream 379389 21906999 ~ 21907385 (-)
G72537 pde1a,LOC108443795,LOC107716994,LOC107699023 non-coding upstream 12114 22307182 ~ 22310478 (-)
G72535 NA non-coding upstream 16010 22311078 ~ 22458758 (-)
G72583 NA non-coding upstream 284735 22579803 ~ 22580772 (-)
LOC122352087 NA non-coding upstream 290676 22585744 ~ 22588251 (-)
G72605 NA non-coding upstream 357434 22652502 ~ 22653575 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 63107 22171463 ~ 22223667 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other downstream 559954 21709288 ~ 21726820 (-)
G71938 nab1,LOC107565022 other downstream 1782884 20489164 ~ 20503890 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 2393459 19881550 ~ 19893315 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other downstream 2434149 19833920 ~ 19852625 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other upstream 1939 22297007 ~ 22511307 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 1635139 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 1648917 23943985 ~ 23960325 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other upstream 1925454 24220522 ~ 24280708 (-)
G73201 NA other upstream 2732517 25027585 ~ 25030965 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_13752424_13753460 NA coding CI01000009 null 13752424 ~ 13753823 (+)