G72537 (pde1a,LOC108443795,LOC107716994,LOC107699023)


Basic Information

Item Value
gene id G72537
gene name pde1a,LOC108443795,LOC107716994,LOC107699023
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22307182 ~ 22310478 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU107340
atgttttattttttttctctgtgcagATACCAGTGTCCTCCTTGTGTCATTTGTGGAAGCTCTGGAAATCAAGCACAGCAAGCACAGAAACCCCTTATCACAATCTGATCCACGCTGCCGATGTCACGCAGACAGCACACTATCTGATGCTACACACTGGCATTATGCACTGGCTCACTGAACTGGAAATATTGGCCATGGTGTTTGCCGCTGCTATCCACGACTTTGAACACACTGGAACCACCAATAACTCCCACATCCAGACCAGATCGGAAGTAGCCATCCTCTACAGCGATCGCTCGGTTCTGGAAAACCACCACGT

Function

symbol description
pde1a Predicted to enable calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity. Acts upstream of or within pronephros development. Predicted to be active in neuronal cell body. Is expressed in brain; head; liver; pleuroperitoneal region; and trunk. Orthologous to human PDE1A (phosphodiesterase 1A).

NR:

description
PREDICTED: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107340 True 322 lncRNA 0.48 3 22307182 22310478

Neighbor

gene id symbol gene type direction distance location
neurod1 neurod1,LOC107601389,LOC107755376,LOC107676085,LOC107716998,LOC107601620 coding downstream 78683 22225558 ~ 22228499 (-)
LOC122351744 ube2e3,LOC107601610 coding downstream 399469 21897185 ~ 21907713 (-)
LOC122351560 ttn,LOC107657509,LOC107714399,LOC108435065 coding downstream 411135 21744043 ~ 21896047 (-)
LOC122351741 LOC107704498,LOC107549376 coding downstream 1136407 21168939 ~ 21170775 (-)
LOC122351738 ttnb,LOC107698997,LOC107714355,LOC107657493,LOC107601612,LOC107716993,LOC107562704 coding downstream 1536029 20769745 ~ 20771153 (-)
LOC122352034 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC106582264 coding upstream 30930 22341408 ~ 22398653 (-)
LOC122351832 NA coding upstream 171748 22482226 ~ 22484709 (-)
dusp19a dusp19a,dusp19,LOC107739447,LOC107699004,LOC107601374,LOC107601606,LOC107755360,LOC106586411 coding upstream 227497 22537975 ~ 22541710 (-)
dnajc10 dnajc10,LOC107755373,LOC107739439,LOC107699025,LOC107676092 coding upstream 287350 22597828 ~ 22610069 (-)
LOC122351760 LOC107755372 coding upstream 300880 22611358 ~ 22615781 (-)
G72502 ppp1r1c,LOC107699022,LOC107601387,LOC107716995,LOC107755374,LOC107676093 non-coding downstream 12114 22286774 ~ 22295068 (-)
G72500 NA non-coding downstream 183774 22123190 ~ 22123408 (-)
G72493 NA non-coding downstream 206944 22100026 ~ 22100238 (-)
G72472 NA non-coding downstream 250347 21995935 ~ 22056835 (-)
G72479 NA non-coding downstream 364192 21942567 ~ 21942990 (-)
G72535 NA non-coding upstream 600 22311078 ~ 22458758 (-)
G72583 NA non-coding upstream 269325 22579803 ~ 22580772 (-)
LOC122352087 NA non-coding upstream 275266 22585744 ~ 22588251 (-)
G72605 NA non-coding upstream 342024 22652502 ~ 22653575 (-)
G72603 LOC107739437,LOC107699030,LOC107601381,LOC107676090,LOC107755369,LOC107755357 non-coding upstream 347839 22658317 ~ 22658828 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 83515 22171463 ~ 22223667 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other downstream 580362 21709288 ~ 21726820 (-)
G71938 nab1,LOC107565022 other downstream 1803292 20489164 ~ 20503890 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 2413867 19881550 ~ 19893315 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other downstream 2454557 19833920 ~ 19852625 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 1619729 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 1633507 23943985 ~ 23960325 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other upstream 1910044 24220522 ~ 24280708 (-)
G73201 NA other upstream 2717107 25027585 ~ 25030965 (-)
G73301 NA other upstream 3038300 25348778 ~ 25349640 (-)

Expression


Co-expression Network