G72583


Basic Information

Item Value
gene id G72583
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22579803 ~ 22580772 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU107400
GTCAAACTGCATTTGACctgatgtttattcatgttatggAAGATACATTGTCATTTccaaaaaatccaaaacataTAAAACCAGCTAAAGGAGAGGAGGGGGAAAACAACTGATAAACATTCAATAAATATGTAAGAATGTTTATTGTAGCTCACAGACAGGTACAATGGAGTGTCAATGCCACAAGGCATCATGAAAGTTAGTTAAAAAATTATACTATGCTTTGTACAAACAACACTAGGTTGCTTTTATAACATGTAGTTATGCACAATTCTGCCATTTCAATCCAAATGAGATGCTGTTATATCCATTAATTTGGCAAGTATGTCAAAGGAACACAAagtgtaatgaaaataaatgcaaattcacagggagggagagagagagagagagagagagagagaaagcacgCAGTAACCCACACAGATTAGATCTagaacaacatcaaaaaaagaaTCACTGTTTCATAGAGGCATCTGTTATCGTAACAAGCATTTAGCATGATGTAgagtttttaataattcaccATTGCaaattaaaacacaaaccaaaaaaaaaaaaatggtcaaaatgaTACTTAGTGTCACTAGTCCCTGGGATCAAACTCGATTATTGTAAGTGGTcaataaacaaatcatttttttccctctttattCAGTGTCATAAAAGTATTGATCCCATTAAAAGTCTTGAACTGGTAAGACTATAACATTGGAGAATCCTACAGAGGAATATGGAATGAGGGCTGAAGTATCCGCCCCTCGAGTGCTCTACGCACGGGAACTCTTACGCGGAAGAAGACACAGACTGCTTGTACACGGCGTGGTAGGCGTTCCGGAGCAGGACATACGGGAAGCAGGATTCCAAGAGGTCCATGGTGAGAAATGGCGATTCTTGAACGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107400 True 902 lncRNA 0.38 2 22579803 22580772

Neighbor

gene id symbol gene type direction distance location
dusp19a dusp19a,dusp19,LOC107739447,LOC107699004,LOC107601374,LOC107601606,LOC107755360,LOC106586411 coding downstream 38093 22537975 ~ 22541710 (-)
LOC122351832 NA coding downstream 95094 22482226 ~ 22484709 (-)
LOC122352034 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC106582264 coding downstream 181150 22341408 ~ 22398653 (-)
neurod1 neurod1,LOC107601389,LOC107755376,LOC107676085,LOC107716998,LOC107601620 coding downstream 351304 22225558 ~ 22228499 (-)
LOC122351744 ube2e3,LOC107601610 coding downstream 672090 21897185 ~ 21907713 (-)
dnajc10 dnajc10,LOC107755373,LOC107739439,LOC107699025,LOC107676092 coding upstream 17056 22597828 ~ 22610069 (-)
LOC122351760 LOC107755372 coding upstream 30586 22611358 ~ 22615781 (-)
LOC122351761 LOC107601373,LOC107755372,LOC107739445,LOC107601614,LOC107601364,LOC107739440 coding upstream 36092 22616864 ~ 22620788 (-)
vil1 vil1,LOC107699006,LOC107676071,LOC107755365,LOC107601613,LOC107739444 coding upstream 41286 22622058 ~ 22635997 (-)
itgb2 LOC107699026,LOC107739438,LOC107601382,LOC107676087,LOC107601617,LOC107755371 coding upstream 56123 22636895 ~ 22645747 (-)
G72535 NA non-coding downstream 121045 22311078 ~ 22458758 (-)
G72537 pde1a,LOC108443795,LOC107716994,LOC107699023 non-coding downstream 269325 22307182 ~ 22310478 (-)
G72502 ppp1r1c,LOC107699022,LOC107601387,LOC107716995,LOC107755374,LOC107676093 non-coding downstream 284735 22286774 ~ 22295068 (-)
G72500 NA non-coding downstream 456395 22123190 ~ 22123408 (-)
G72493 NA non-coding downstream 479565 22100026 ~ 22100238 (-)
LOC122352087 NA non-coding upstream 4972 22585744 ~ 22588251 (-)
G72605 NA non-coding upstream 71730 22652502 ~ 22653575 (-)
G72603 LOC107739437,LOC107699030,LOC107601381,LOC107676090,LOC107755369,LOC107755357 non-coding upstream 77545 22658317 ~ 22658828 (-)
G72608 NA non-coding upstream 86125 22666897 ~ 22667111 (-)
G72615 NA non-coding upstream 119957 22700729 ~ 22701019 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other downstream 68496 22297007 ~ 22511307 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 356136 22171463 ~ 22223667 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other downstream 852983 21709288 ~ 21726820 (-)
G71938 nab1,LOC107565022 other downstream 2075913 20489164 ~ 20503890 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 2686488 19881550 ~ 19893315 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 1349435 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 1363213 23943985 ~ 23960325 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other upstream 1639750 24220522 ~ 24280708 (-)
G73201 NA other upstream 2446813 25027585 ~ 25030965 (-)
G73301 NA other upstream 2768006 25348778 ~ 25349640 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G280552 NA non-coding NW_019172443.1 APWO02002041.1 343708 ~ 344240 (-)