CI01000000_01347674_01352321


Basic Information

Item Value
gene id CI01000000_01347674_01352321
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1347674 ~ 1353228 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_01347674_01352321.mRNA
GGAGTGGATGGGCAGAAAGGAGAGAAAGGAGACTCTATACTAGAGGACAATCTGGTTCAGATGATTTCACAACCAGGACCACCAGGGCCTCCAGGTCCACCAGGACCACCTGGATACATGGGTCATCGTGGCATACCAGGCCCCAAAGGTGATCCAGGGGAGAGTATTAAAGGAGAGAAGGGAGAAATCGGTGCTTCAGGAATACAAGGTTTTCCTGGCATTAAAGGAGACAGGGGTGAGCGTGGGGAGAGAGGAGAGAAGGGAGATCGTGGTCCTGTCGGAAAGAGAGGCCTCAAGGGAAAGAAAGGTGAACAGGGACCGCCGGGTCTGGACCAGCCCTGTCCCGTGGAGTGTATATTGTATATGTGTGCTTTCGCTGACAGGGAGCTGATGGATGTAAAAAAGAGGCGGTGGAAATGGGGCATCCGGCCCCTGAGGCCCCCTGCCCACTGGTACAGTATATCTGCCTGCTCTCTCTCGCTCTCTGTGCCCTGTTTCTGACACTTCCTGTTTCACCTTTATAACTACTCCTTTTAAACTATCCCATGTCTGTCACTTACATACACTACTGTTTAAAAGTTTATGGTCAGTAAGGTTTTTTTTTTTTTTTTTTGAAAGAACATTTTTTTTATTCAGCAAGGATGCATTAAATTGATCAAAAGTAGTAGATTTTAGACAAAGGTTAAGAGATTTCTACTTCAAAGAAATGCTTTTCATTGGACTTTCTATTTATTAAACATTAATAATAAATGTTTCTTGAGCAGCAAATCAGTATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGCAGTAATGATGCTGAAAATTCAGATTTGCCATCACAGCAATTAATAAAATTTTCAAAAACAAAAAACTGTTCTTTTAAAATGTCATAATATTTCAATTTATATTACTGTTTGTTTGTTTTTTAATCAAATAAATGCATTGATGAGACTTCTTTCAAAAACATGAAAAAATGAACATAGGAACAGTAGTACATATACAACACACACCTCTGAGATTTAAGGGTTATAAACCTAAGACTGATGCATAAAATATTAACTAGGTTTGATAAGAAACATTCTAACTTTTCGAGCATTATGTAATATCTGATTAATATTTTATTAGTGTTGCTTACTTCATAAAACCTTAGCATTATTGTGATGAGTTTGGCAATGGCAGGCATTCAAAAAGCTAGTTTTCTTGGTGTTGTGATCCTTTGAGATCAAAAATATCAGATTAAACATTCAGCATACAATGATTATTAAATTTTTTTGCATACATTATTAGGATTTTGTGTGCAGTGTGCGCTTACAGGCAATTATAACATTTGACGTTTTTTTTATTTATTTTTAGCCATTTATTTTTTTTTTTTTTTTTTTTTTAGCCATTTTAACATA

Function

NR:

description
collagen alpha-1(XXIII) chain isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_01347674_01352321.mRNA True 1408 mRNA 0.37 7 1347674 1353228

Neighbor

gene id symbol gene type direction distance location
CI01000000_01209256_01229839 NA coding upstream 117315 1208489 ~ 1230359 (+)
CI01000000_01196208_01208022 CLK4, CLK4A coding upstream 139317 1196208 ~ 1208357 (+)
CI01000000_01176488_01180221 4EB3L, 4EBP, EIF4EBP3, EIF4EBP3L coding upstream 167405 1176450 ~ 1180269 (+)
CI01000000_01149697_01163047 RUFY1 coding upstream 183694 1149697 ~ 1163980 (+)
CI01000000_01105760_01112812 NA coding upstream 233722 1105760 ~ 1113952 (+)
CI01000000_01405606_01410241 NIPSNAP3A coding downstream 52378 1405606 ~ 1410503 (+)
CI01000000_01459294_01485147 SLC44A1 coding downstream 106066 1459294 ~ 1485311 (+)
CI01000000_01511690_01517631 IKBKAP coding downstream 158462 1511690 ~ 1517719 (+)
CI01000000_01680507_01690297 CPLX2, CPLX1, CPLX1.L coding downstream 327279 1680507 ~ 1691194 (+)
CI01000000_01848610_01851296 NA coding downstream 494315 1847543 ~ 1851898 (+)
G499 NA non-coding upstream 43617 1303857 ~ 1304057 (+)
G483 NA non-coding upstream 92371 1255040 ~ 1255303 (+)
G480 NA non-coding upstream 94605 1252796 ~ 1253069 (+)
G479 NA non-coding upstream 98861 1248550 ~ 1248813 (+)
G473 NA non-coding upstream 125157 1222293 ~ 1222517 (+)
G449 NA non-coding downstream 8815 1362043 ~ 1363359 (+)
G502 NA non-coding downstream 13899 1367127 ~ 1367360 (+)
G506 NA non-coding downstream 15107 1368335 ~ 1368897 (+)
G505 NA non-coding downstream 18891 1372119 ~ 1374608 (+)
G504 NA non-coding downstream 22785 1376013 ~ 1376769 (+)
G350 NA other upstream 670737 671842 ~ 676937 (+)
G252 NA other upstream 840602 503209 ~ 507072 (+)
G435 NA other downstream 71893 1425121 ~ 1432854 (+)
G579 NA other downstream 462225 1767917 ~ 1908808 (+)
G2774 NA other downstream 3100550 4453778 ~ 4454232 (+)
G2850 NA other downstream 3372758 4725986 ~ 4726482 (+)
G6811 NA other downstream 8851603 10204831 ~ 10321679 (+)

Expression


Co-expression Network