G73084 (rdh1,LOC107566765,LOC107744825,LOC107674762,LOC106581784)


Basic Information

Item Value
gene id G73084
gene name rdh1,LOC107566765,LOC107744825,LOC107674762,LOC106581784
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 24564881 ~ 24571112 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU108133
GCGGGCCACCAAAGGGCACTTTAATTATGGacagtaatatataaaatgtatttttatttgattgcattAATGCACGCCTTTGCATAACACTTGAATGAGATCCAATACGCTCTCTCCTAATTTTGAGGAGCTGATTACACAATAGCGTCTGTTTCACACCATATACAGTGTgtcattatttcacaaaatatatagCATTTTATCTTTTCAGAAGTCTTGTATTCTCCCGCTAATCGGCACGAGACTTGCCGCGAAGACATCAGACATCATTTTGACGTGATCCAGATTTTCCCTTTTTCTGCCACTCTGCAGATCGCAAGTTAAACGATACAAAGCGCTCTACATTTTTCTGCTGCACGTGATGAACGTTCATGCCGGTTTTTTAACTCGGCATCATCATAaatctaatattattattatttttttttttgcacatcgGCTGGACTGAGCTGCAGGGTTATTTTTAGTGATGTTCAGCTCTTCTTCACGGAAGGCATTATAACGCTGGTGAAGAGGTCTGCTATGCGTGTCGGCAGGTACGAGAGCGGGATCCAGAGGAGCTTGGCGTCCCAGCCGGCGCTGTAGCGCGTTCGGGGATGCCGCGCTGAAAGAGCGTGCTGCATGCACGAGGTCACTTTATTAAGATCGCCGCTGGCCAGAATCTTCATGGAGAACTCCTGCAGCTTTATATCTGGAAGAAAAGATTGAGAGAAGTGCAGACATGTCAGTACGACGTAACGGCGTCGTCGCACGAGGCTCTGAATACAAGGCTAATATAAACGATaatggactattttaaccaACGTTTGTCTCTGTGATGTATTTTTAGAGCATTGTGGTATCGACTGTTGTACTAGGAGTGTTTTCAAACATGTTTCACTGGATGAGCACGTTTTacgtgaactattccttttaaatgcatcatgATAGAAATCTAAAACAGTGTTGTGTTGCATGAAATCTGCGCTCATAGGACACCAGAAGCACTCACAGTCCTGCAGGTATGAGTCTCCGTAGGCTCTCCTGACCTCTGCTGGCAGGCTGTTCCATCGTTTCTTCAGATCATCTTCAATGAGGCCTAGATCTGTCACTTGTGTCTTGAAGAAGCCTGGTTCAATGATACTTACTTTTACTCCAAAGTGCCTCATATCTCCTCAAGCTATCAGAGAAGGCCTCCACACCATATTTAGCGAGACAATATCCTCCCCCGATGAGCGAGACTCTTCCCAGGATACTGGCCACGTTCACCACCCGACCACGAGCCTTCTTCAGCAGAGGAAGAAACTTCAGAGTCACCCCAATGAGGCCGATGAGGTTAACATCCAGGACCTTCTTAAAGTCGTCCGGCTGCATCCATTCCATGGGGCCGATGGGGACCGAGATGCCGGCGTTGTTCACCAAACCCCACAGACCTGACAGGAAAACATAAGAAATCCAGCGTGCATGCACATCACGCAATGAAAAGAACGGTTCCCCCACTCTCAGGCCTTTCAAGACGTAGATGGgtctgtttcttcatcaggaCGGATTTGGAAAagttgcatcacttgctcaccaatgtaGCTcactctgtagtgaatgggtgccgtcggaatccaaacagctgataaaaccgtcacagtaatccacaccacttgagtccatcaattaatgtctcgCGATATGAAAAACGGCATGTTCGTAGgaaacaaatctatcattaagacaataatattgcataatattGCATTCTTCAGTTAAAAAGTTGTTTCGACTGAGATACATTAGGAGATAAATATGGACAGATCAAGCCATGTTTAGAAACAAAAACGGTACTAAAATAGTTAACAAATGTTGATAGATTTTGGTGTGAGAtgagaacaaaaaaatggaCCTCTTTATTGGATAAGGTCTTATTATGGATTATGCACTTGTCGAAATCAAcgatttaaagttaaaatgcctcaaaggattgttttttttttacaagcatgcagctttttacttcacaatatagtaaaaaaaaattcatgtgaATTATTCTGGTGTTTTTTcggctgtttagactctcattctgacggcacccatccactgcagaggAACCACTGGTGAAAATCTGTtctgacgaagaaacaaactcatctacatttagGATGTCCTGAGGGTTAACTGGAGAGCAAGTAACGTAATGCTAAACGTTTGCATAGTTTGTTCATAAAGCATTGAAAACGTCGTCTTTGCGGATggtcattattttttcaattcagttatgaaaaaggtagatttttttattcGTATCGGAAAAGTACTGCTAGTTGGTCAAACTAGTTCTTAAGACAAACGGTCTTAACATGGTGACCAAGTTTATGCAACTAGCCcccatgaagaaaaaaaaaaaagtctaaaaacacTAAAAGGTGATTAAACTGTCAGCCAAGATTAATTTTCGGCAGCGCTATCACTttaaggtcaaaggtcactgaGGTGAGCAAACACGTCAAGTGCAATACAAGGAAAGCAAGtcgttttataataaatgttgcGGCTTTGGTATGAGAATGGCATTCGCCTGAAGATGCTCCTCCAGGTCAACTAAAAGCGCTTGTCCGAGGTTTTTGCAGATTTATGAGTTTGTCCGAGAGCCGCGCGGTCGTCAAAGCGCCCGTATCTCGGCTTTATCTCTCGCTGTGCTCGACTCTCCCCGGCACCCTATCTGACCCGTCCGTCTCACCTCTCTCCCCGGTCTCGCTGCGCACGCGCTCCAGCGCGCTCTCCACGCTCGCGCTGTCGGTAACATTGAGCAGAAGCGTCTTGAGCCTGGGGGAGGCCGCCGCGCGCAGCCTGGAGGCGCCAGGTTCCGTGAGGCACGCGGCGATCACGTGAAAGCCCCGCCGGTCGAGCTGGCGCGCCGCGAGCGCTCCGAAGCCGCTGTCGCAGCCCGTCACCAGAACGCGCTTCGTGGACGCCGCCGATCCGACGGGAGTCACGGAAGAACCAGACCGCGGCGGCGAGCGCCAGAACGGCCAggaaacagcagcagaagaagagCGCCTGAGAAGGGAGACACTGGCCTTTAAAGGACGAAAGCATCCGAGACGAAGCTTGGCATGTAGGAGAGAGGCAGCCAGAAGAACTTGGCGTCCCAGCCTGGGGAGTATCTGGAGCGAGGATGGACCGCGGCCACCGCGTGCTCCATGCAGCTGACCACCTTCATCAGATCTGGGTCCAGTATCTTCTCAATCTTCTCCTTA

Function

symbol description
rdh1 Enables NAD-retinol dehydrogenase activity. Acts upstream of or within several processes, including embryonic pectoral fin morphogenesis; pancreas development; and retinoid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb and liver. Orthologous to human HSD17B6 (hydroxysteroid 17-beta dehydrogenase 6).

NR:

description
PREDICTED: retinol dehydrogenase 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108133 True 3230 lncRNA 0.46 3 24564881 24571112

Neighbor

gene id symbol gene type direction distance location
abcb11a abcb11a,LOC107677906,LOC107674755,LOC107564151,LOC106581787,LOC107744834 coding downstream 6138 24533877 ~ 24558743 (-)
spc25 spc25,LOC107707602,LOC107564152,LOC107677909,LOC107708316,LOC107674771,LOC107566753 coding downstream 31833 24529672 ~ 24533048 (-)
stk39 stk39,LOC107707604,LOC107708317,LOC107558608 coding downstream 82794 24425526 ~ 24482087 (-)
csrnp3 csrnp3,LOC107674773,LOC107722915,LOC107755203,LOC107677900 coding downstream 371079 24142666 ~ 24193802 (-)
slc38a11 slc38a11,LOC107674763,LOC107677901 coding downstream 526751 24029509 ~ 24038130 (-)
lrp2a lrp2a,lrp2 coding upstream 750 24571862 ~ 24667167 (-)
fastkd1 NA coding upstream 146498 24717610 ~ 24727730 (-)
ccdc173 ccdc173,LOC107596564,LOC107677915,LOC107564134,LOC107577048,LOC107744830 coding upstream 157256 24728368 ~ 24733782 (-)
mettl5 mettl5,LOC107744838,LOC107739664 coding upstream 183776 24754888 ~ 24758657 (-)
cxcr2 LOC107656519,LOC107596606,LOC107739752,LOC107688962,LOC107564148,LOC107731305 coding upstream 190429 24761541 ~ 24764855 (-)
G73077 NA non-coding downstream 43573 24513094 ~ 24521308 (-)
G72980 NA non-coding downstream 279191 24253362 ~ 24285690 (-)
G72984 NA non-coding downstream 280716 24281991 ~ 24284165 (-)
G72929 NA non-coding downstream 583643 23926223 ~ 23981238 (-)
G72927 NA non-coding downstream 650995 23912173 ~ 23913886 (-)
G73160 NA non-coding upstream 168214 24739326 ~ 24745938 (-)
G73175 NA non-coding upstream 205048 24776160 ~ 24778655 (-)
G73179 NA non-coding upstream 229926 24801038 ~ 24801377 (-)
LOC122351686 NA non-coding upstream 241204 24812316 ~ 24821062 (-)
G73186 NA non-coding upstream 268494 24839606 ~ 24839961 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other downstream 284173 24220522 ~ 24280708 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other downstream 604556 23943985 ~ 23960325 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other downstream 633552 23930207 ~ 23931329 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other downstream 2053574 22297007 ~ 22511307 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 2341214 22171463 ~ 22223667 (-)
G73201 NA other upstream 456473 25027585 ~ 25030965 (-)
G73301 NA other upstream 777666 25348778 ~ 25349640 (-)
G73300 LOC107577510,LOC107663597,LOC107729051,LOC107728259,LOC107661178 other upstream 885302 25456414 ~ 25458742 (-)
G73347 NA other upstream 1219405 25790517 ~ 25793056 (-)
LOC122351758 LOC107663860,LOC107722919,LOC107561565,LOC107585695,LOC107675138 other upstream 1222971 25794083 ~ 25853303 (-)

Expression


Co-expression Network