LOC122351686


Basic Information

Item Value
gene id LOC122351686
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 24812316 ~ 24821062 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU108298
CTGGTACTTCATGTATCATTTAccgaataaaataaaagaaatagaatagaaatagaatataTAACATCTCCGACAGTGATTAATTTCAGTGAGATACTGTTACAGCTTCACTGTCAAGTTCACAGAGCGACTTCAAGAAACTTCGATGGAGATATTCACGCATGAACCCATGTGCGTCCTACCTTAGATAAGAGcctcttttcctctttctttttctccacatGCTGATCCAAAGGCATCTGCAGAAAATCGTCTTCACAGCAGATGAAGCTCACGGTGCATCCCATCCAGACAGGTTCAGctgtctagactctcattctgacggcacccattcactgcagaggagccactggtgagcaagtgatatgCTGCATtcgtttctccaaatctgttcccatgaagaaactcatctacatcttggatggctgGAGGCTGACTGTAATCTGAGAGGGAACAGGGAAAGAGGGAAATGGTTCTGAGACACCCGGGCCGATGCCCATCGCCAGAACTCCTAGGGGCCAGAGAACCACAAAAGGCCTCTGTGGAAGAGAGATCCGGGGTCGGACCAGTGCGGCTTTCATGTCTGGGTTTCCTCGGTCACTTAAATCCGCAGGTGCTGAGAGGGGACGTCTGTGACTGAAAAACATTCCCAGGGTGCCATTTGATACAGACGTGAATCAGAAGATCCTGACGAAACTCATTCCACAGCTCAGCAGTCGCGTGTGTTTTATCCAAGCTGCTTTCAAATATCAACAACCTCTGTTCTGAACATATGCGTAAATGAATTACGTTTCCCTTTATACAAACTACAAATGCACTTAACCCTATGAAGCCTGctgtatcatatttgatatgTGCATCTCTGAATGATCAGCTTGATTAAAATTGCTGTTCTTTACCATCTA
>XR_006251791.1
TAGATAAGAGcctcttttcctctttctttttctccacatGCTGATCCAAAGGCATCTGCAGAAAATCGTCTTCACAGCAGATGAAGCTCACGGTGCATCCCATCCAGACAGGTTCAGGTGAGCGTCCTTAAGACCCATTCAACGCGAGCGTTCCCCGGGAATATTCCTCCTGAAGGTCAGCGCGGCAGGTATGAGCTGCGATCAAACACTCGCGGGGCACTTCGGCCCAGATCGGATCCGGCGGGGGTTATTCCATTAGCGTCGGCGTCTCCGCGCGCGGTGTTCGCGTTGACCGCGGAACTGCCATTGGGAATGACGCGCTGAAGCGGTGGGAAGGACCGGAGCGCGAGGGGGAAAAGTTTGAAAACTGGGATGCGTGACTCTGAAGTGtctcgcgcgcgcgcgcgcgctcccGGAGCTGCAGGAGAGTAAACACAGGCCGCCTCGCTTTAATGTGCAGCGATGCCTTGCGCAGctgtctagactctcattctgacggcacccattcactgcagaggagccactggtgagcaagtgatatgCTGCATtcgtttctccaaatctgttcccatgaagaaactcatctacatcttggatggctgGAGGCTGAGTAAATATTCAGCAAAATGACATTCTTAGCTGAACTAGTGgtctaatattatatttttgaacgTATAAACCTCAGACTTATTTTACAGACTTGTACTCCACCATCTTACACTTTGCCTCTTTCTCCTTAGCTGTAATCTGAGAGGGAACAGGGAAAGAGGGAAATGGTTCTGAGACACCCGGGCCGATGCCCATCGCCAGAACTCCTAGGGGCCAGAGAACCACAAAAGGCCTCTGTGGAAGAGAGATCCGGGGTCGGACCAGTGCGGCTTTCATGTCTGGGTTTCCTCGGTCACTTAAATCCGCAGGTGCTGAGAGGGGACGTCTGTGACTGAAAAACATTCCCAGGGTGCCATTTGATACAGACGTGAATCAGAAGATCCTGACGAAACTCATTCCACAGCTCAGCAGTCGCGTGTGTTTTATCCAAGCTGCTTTCAAATATCAACAACCTCTGTTCTGAACATATGCGTAAATGAATTACGTTTCCCTTTATACAAACTACAAATGCACTTAACCCTATGAAGCCTGctgtatcatatttgatatgTGCATCTCTGAATGATCAGCTTGATTAAAATTGCTGTTCTTTACCATCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108298 False 905 lncRNA 0.45 3 24812316 24821062
XR_006251791.1 True 1209 lncRNA 0.50 2 24812316 24820878

Neighbor

gene id symbol gene type direction distance location
gpbar1 LOC107656509,LOC107564146,LOC107688960,LOC107739693,LOC107596586 coding downstream 4535 24803623 ~ 24807781 (-)
zgc:92380 zgc:92380,LOC107656510,LOC107564128,LOC107688951,LOC107739632 coding downstream 15262 24789506 ~ 24797054 (-)
LOC122351587 NA coding downstream 26079 24784903 ~ 24786237 (-)
LOC122351585 LOC107656512,LOC107744835,LOC107596607,LOC107739743,LOC107688961,LOC107564147 coding downstream 40057 24768285 ~ 24772259 (-)
cxcr2 LOC107656519,LOC107596606,LOC107739752,LOC107688962,LOC107564148,LOC107731305 coding downstream 47461 24761541 ~ 24764855 (-)
LOC122351834 LOC107572957,LOC107663596,LOC107573769,LOC107728255,LOC107661170,LOC108265697 coding upstream 638833 25459895 ~ 25462849 (-)
LOC122352035 rbms1,LOC107675130,LOC107730583,LOC107663836,LOC107722911 coding upstream 1041691 25862753 ~ 25919696 (-)
gcgb gcgb,gcg,LOC107730589,LOC107677918,LOC107722905,LOC107674768,LOC105907977 coding upstream 1244150 26065212 ~ 26067013 (-)
LOC122351282 fap,LOC107563829,LOC107722901,LOC107677917,LOC107561562 coding upstream 1247176 26068238 ~ 26080787 (-)
ifih1 ifih1,LOC107722900,LOC107563828,LOC107730588,LOC107561563 coding upstream 1261086 26082148 ~ 26104816 (-)
G73179 NA non-coding downstream 10939 24801038 ~ 24801377 (-)
G73175 NA non-coding downstream 33661 24776160 ~ 24778655 (-)
G73160 NA non-coding downstream 66378 24739326 ~ 24745938 (-)
G73084 rdh1,LOC107566765,LOC107744825,LOC107674762,LOC106581784 non-coding downstream 241204 24564881 ~ 24571112 (-)
G73077 NA non-coding downstream 291008 24513094 ~ 24521308 (-)
G73186 NA non-coding upstream 18544 24839606 ~ 24839961 (-)
LOC122351187 NA non-coding upstream 271574 25092636 ~ 25094799 (-)
G73302 NA non-coding upstream 530001 25351063 ~ 25389815 (-)
G73305 cdo1,LOC102791980 non-coding upstream 651204 25472266 ~ 25476938 (-)
LOC122351247 NA non-coding upstream 922959 25744021 ~ 25750389 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other downstream 531608 24220522 ~ 24280708 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other downstream 851991 23943985 ~ 23960325 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other downstream 880987 23930207 ~ 23931329 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other downstream 2301009 22297007 ~ 22511307 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 2588649 22171463 ~ 22223667 (-)
G73201 NA other upstream 206523 25027585 ~ 25030965 (-)
G73301 NA other upstream 527716 25348778 ~ 25349640 (-)
G73300 LOC107577510,LOC107663597,LOC107729051,LOC107728259,LOC107661178 other upstream 635352 25456414 ~ 25458742 (-)
G73347 NA other upstream 969455 25790517 ~ 25793056 (-)
LOC122351758 LOC107663860,LOC107722919,LOC107561565,LOC107585695,LOC107675138 other upstream 973021 25794083 ~ 25853303 (-)

Expression


Co-expression Network