LOC122351665


Basic Information

Item Value
gene id LOC122351665
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 1259579 ~ 1279178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU98987
AATGACGTTGGGAAAGCAGTCTTGACAACTTCCTTAAACGTTTGTTCAAGTACATAATGTATTTAACTTAAGTTTTGTGCGCTTTCGTTGACAAAAATAGGATATAACATCACGGATTTACAGATCTTGTCAGTCACCATGGTGTAGGGGTGACTTATGAATTGTGAATTTTTGAAGAACCCATCCAATAAAGtgtgaGGTTGCTACTATTTGTGACTTATGATCAACAGTCAAGATGAGGACAACAGGGCAGCTTCTCTTCATGTCTTTCTACTTTACAGTGCTTCAGACAATCCCTGCTCCTGTCAACTTTACAATATTGTCACACAATTTCAAGCACATTTTGCAGTGGAGCCCTGGAATAAATTCTCCTCCAGGGACTGTTTTCAGTGTGAATCAAAGTTCAACTCTTCACCAGAACCAAAGCCCTTTAACAAGACAGTTCT
>TU98988
AATGACGTTGGGAAAGCAGTCTTGACAACTTCCTTAAACGTTTGTTCAAGTACATAATGTATTTAACTTAAGTTTTGTGCGCTTTCGTTGACAAAAATAGGATATAACATCACGGATTTACAGATCTTGTCAGTCACCATGGTGTAGGGGTGACTTATGAATTGTGAATTTTTGAAGAACCCATCCAATAAAGtgtgaGGTTGCTACTATTTGTGACTTATGATCAACAGTCAAGATGAGGACAACAGGGCAGCTTCTCTTCATGTCTTTCTACTTTACAGTGCTTCAGACAATCCCTGCTCCTGTCAACTTTACAATATTGTCACACAATTTCAAGCACATTTTGCAGTGGAGCCCTGGAATAAATTCTCCTCCAGGGACTGTTTTCAGTGTGAATCAAAGCTTGGATAGAGC
>XR_006251784.1
CATGCTGTCAAGTTCGCTTGAAGCACGTGTTTTCCAGTAATGACGTTGGGAAAGCAGTCTTGACAACTTCCTTAAACGTTTGTTCAAGTACATAATGTATTTAACTTAAGTTTTGTGCGCTTTCGTTGACAAAAATAGGATATAACATCACGGATTTACAGATCTTGTCAGTCACCATGGTGTAGGGGTGACTTATGAATTGTGAATTTTTGAAGAACCCATCCAATAAAGGAAGTTTACAGCAGCCAAAAGAAATTATGATGTGGGTAACAAAGAACTCTTGTCCATGAAAGCAGCAATCAAAAAGCTGCGTCTCTGGCTAAAGGGAGCCGTACACCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98987 True 446 lncRNA 0.39 5 1259617 1275722
TU98988 False 414 lncRNA 0.39 5 1259617 1279178
XR_006251784.1 False 341 lncRNA 0.40 3 1259579 1262590

Neighbor

gene id symbol gene type direction distance location
LOC122351657 LOC107746587 coding upstream 20556 1231173 ~ 1239023 (+)
LOC122351655 LOC107700959,LOC107700956,LOC107558461,LOC107711456,LOC107733036 coding upstream 180332 1067017 ~ 1079247 (+)
LOC122351656 LOC107700959,LOC107711456,LOC107558461 coding upstream 201563 1048414 ~ 1058016 (+)
LOC122351648 LOC107686979,LOC107709150,LOC107670647 coding upstream 326241 910031 ~ 933338 (+)
LOC122351660 NA coding upstream 351658 899630 ~ 907921 (+)
LOC122351663 NA coding downstream 20378 1299556 ~ 1315895 (+)
LOC122351375 ccdc148,LOC107568893 coding downstream 380832 1660010 ~ 1688469 (+)
ndufa4l2a ndufa4l2a,ndufa4l2,LOC107678808,LOC107571901,LOC108434410,LOC100690915 coding downstream 582631 1861809 ~ 1865607 (+)
LOC122351505 LOC107734497,LOC107657409,LOC107548806,LOC107685428,LOC107745260,LOC107567977,LOC107657408,LOC107734493 coding downstream 866327 2145505 ~ 2201714 (+)
LOC122351218 cytip,LOC107745276,LOC107567979,LOC107685429,LOC107734494,LOC107657378,LOC107548784 coding downstream 975379 2254557 ~ 2258615 (+)
G66891 NA non-coding upstream 30137 1229232 ~ 1229442 (+)
G66767 LOC107709150,LOC107670647,LOC107733035,LOC107686979 non-coding upstream 243272 991461 ~ 1016307 (+)
G66744 LOC107686979,LOC107558465,LOC107684617,LOC107560491,LOC107709150 non-coding upstream 256015 984459 ~ 1003564 (+)
G66765 NA non-coding upstream 287071 972179 ~ 972508 (+)
G66763 NA non-coding upstream 291438 967610 ~ 968141 (+)
G66931 NA non-coding downstream 246685 1525863 ~ 1527400 (+)
G66952 NA non-coding downstream 306757 1585935 ~ 1594452 (+)
LOC122351376 NA non-coding downstream 392193 1671371 ~ 1674598 (+)
G67023 upp2,LOC107699962,LOC107568900,LOC107568899,LOC107653244,LOC107579388,LOC107569728,LOC107751513 non-coding downstream 409477 1688655 ~ 1692476 (+)
LOC122352111 NA non-coding downstream 414546 1693724 ~ 1695529 (+)
G66795 NA other upstream 124590 1127526 ~ 1134989 (+)
LOC122351650 si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 other upstream 360200 858680 ~ 899379 (+)
G66727 fam126b,LOC107700963 other upstream 454570 797133 ~ 805009 (+)
G66657 NA other upstream 797550 459574 ~ 462029 (+)
bpifcl bpi other downstream 434634 1713812 ~ 1736320 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other downstream 1915595 3194773 ~ 3196618 (+)
LOC122351398 dnajc15,LOC107549910 other downstream 1983429 3262607 ~ 3280052 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other downstream 2634460 3913638 ~ 3922878 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other downstream 2668858 3948036 ~ 3983582 (+)

Expression


Co-expression Network