LOC122352064 (galnt13,galnt1,LOC107671291,LOC107566748,LOC106586166,LOC107657719,LOC107687813,LOC107723435,LOC107706221,LOC107593713)


Basic Information

Item Value
gene id LOC122352064
gene name galnt13,galnt1,LOC107671291,LOC107566748,LOC106586166,LOC107657719,LOC107687813,LOC107723435,LOC107706221,LOC107593713
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 2807924 ~ 2838954 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU99423
TGATCGTCCTGGTCGTGGTGCTGTGTACCACTGTGTATCTCGGAAACTGATGAACCGTTCTTTCTGTGCATATCTTAGTATGTTGGCAAATGGGAGTATGACTTTAAGAAACATACCTTCCTGCACATCATCACCCAATCGTGTCTGACCATCAGTCGGCTGGAGGACGGGACATATGGCCCAACGGTGGAGTACTGTGACGATAGCCCCCTTCAGGCCTGGATCCTCCGAAACTTCACCCGGCAGGAGGTTTTTAAGAAGCTTTACTACAGCCCTACTGATTACTTTCTGTAACTTCCACAACTTCCTGTTGATGGC
>TU99433
ACGGCCCGGGGGAGATGGGAAAGCCAGTGGTCATCGCTAAAGACCAACAGGAGAGGATGAAGGAAATGTTTAAGATAAACCAGTTTAACCTGATGGCCAGTGAGATGATTGCACTCAACAGATCTTTACCGGATGTTCGTCTTGAGGGGTGTAAAACGAAGGTGTATCCAGACGATCTCCCACGCACCAGTGTGGTGATTGTGTTTCATAATGAAGCGTGGACCACTCTGCTCCGAACGGTCCACAGCGTGATGGACAGGTCACCGAGACACCTGCTGGAGGAAATCGTGCTGGTGGATGACGCCAGTGAGAGAGaCTTCTTGAAGAGGCAGTTGGAGCAGTATGTGCGGAAGCTGGAGGTTCCTGTCAGGGTGGTACGGATGGAGCAGCGCTCGGGCCTGATTCGCGCTCGGTTGAAGGGGGCGTCCATCTCCACAGGTCAGGTGATTACCTTCCTGGATGCCCACTGTGAATGCACCACCGGCTGGCTGGAGCCTCTGCTCGCTCGCATCAAAATCGACAAGAAAACCGTGGTGTGTCCCATCATTGACGTGATCAGCGATGACACGTTTGAGTACATGGCAGGCTCTGATATGACATATGGTGGCTTCAACTGGAAGCTGAACTTCCGCTGGTATCCGGTAccacagagagagatggatcGCAGAAAAGGAGACAGAACGCTGCCTGTCAGAGCCTGGTTCTCTGCATGAAAACAACTTGAGAGCATAACAACAACAGGTTCTTACTTGAGGAAAACATGACTGTGAATAAGACGTGCTGCAGgggatggatggaaggaaaaCAGGAAAGAACAGAGAGCGCCTGCTGAGGGAAATGGACGAACACGagcaaaaagatatttaaagaaGGATATGTTGTTGCCAAAATAGGCACATGTAAACATGTCATTTCTACTGAAGATCTCATTCCCCTGAGTGACACGAAACGTGCTTGTTTGTAACAGAGTCAATAGGAGAGGAAGAGCTGCTTTAATAAGATATGATCATTCCCCTGAAGGCCTGTTTTGCaattaaactgtgtttttttttcctttctgtttttGCATCGTCTGTCAGGACCCCCACTATGGCAGGTGGTCTCTTCTCTATAGACAGAGATTATTTTCAGGAGATTGGCACGTACGATGCAGGCATGGACATTTGGGGAGGAGAGAACCTGGAGATCTCGTTTAGGATTTGGCAATGTGGGGGGACGCTTGAGATCGTCACGTGCTCTCACGTCGGTCACGTGTTCCGTAAAGCCACGCCGTACACGTTCCCCGGTGGAACTGGGCAGAtcatcaataaaaacaacagacgGCTGGCGGAGGTCTGGATGGATGAGTTCAAGAACTTCTTCTACATCATCTCACCTGgtgTGACGAAAGTGGATTATGGAGACATCTCATCCAGAACATCCCTGAGACAGAGACTGCAGTGTAAGCCGTTCTCCTGGTACCTAGAAAATGTCTACCCGGACTCCCAGATACCACGCCACTACTACTCGCTCGGAGAGATCCGTAATGTGGAGACTAACCAGTGTCTGGATAACATGGCCAggaaagagaatgaaaaagtGGGCATTTTCAACTGTCATGGCATGGGCGGCAACCAGGTTTTCTCGTACACAGCCAATAAAGAGATCCGGACTGATGACCTCTGTTTGGATGTGTCCAAACTCAATGGTCCCGTTATGATGCTCAAGTGCCATCACTTGAAAGGCAAC
>XM_043249557.1
ctgtgtgtgtgtgtttcaggtgagAAGATGAGGAAGTTTGCGTACTGTAAGGTGGTGCTGGCCACCTCTCTGGTGTGGGTGATGCTAGACATGTTCATCCTCCTCTACTTCAGCGAATGCAACAAATGCGAtgacaaaaaagagagaggattGCCGGGGAGAGACACTGTTGTTCAAAGGCCTCACGACGGCCCGGGGGAGATGGGAAAGCCAGTGGTCATCGCTAAAGACCAACAGGAGAGGATGAAGGAAATGTTTAAGATAAACCAGTTTAACCTGATGGCCAGTGAGATGATTGCACTCAACAGATCTTTACCGGATGTTCGTCTTGAGGGGTGTAAAACGAAGGTGTATCCAGACGATCTCCCACGCACCAGTGTGGTGATTGTGTTTCATAATGAAGCGTGGACCACTCTGCTCCGAACGGTCCACAGCGTGATGGACAGGTCACCGAGACACCTGCTGGAGGAAATCGTGCTGGTGGATGACGCCAGTGAGAGAGaCTTCTTGAAGAGGCAGTTGGAGCAGTATGTGCGGAAGCTGGAGGTTCCTGTCAGGGTGGTACGGATGGAGCAGCGCTCGGGCCTGATTCGCGCTCGGTTGAAGGGGGCGTCCATCTCCACAGGTCAGGTGATTACCTTCCTGGATGCCCACTGTGAATGCACCACCGGCTGGCTGGAGCCTCTGCTCGCTCGCATCAAAATCGACAAGAAAACCGTGGTGTGTCCCATCATTGACGTGATCAGCGATGACACGTTTGAGTACATGGCAGGCTCTGATATGACATATGGTGGCTTCAACTGGAAGCTGAACTTCCGCTGGTATCCGGTAccacagagagagatggatcGCAGAAAAGGAGACAGAACGCTGCCTGTCAGGACCCCCACTATGGCAGGTGGTCTCTTCTCTATAGACAGAGATTATTTTCAGGAGATTGGCACGTACGATGCAGGCATGGACATTTGGGGAGGAGAGAACCTGGAGATCTCGTTTAGGATTTGGCAATGTGGGGGGACGCTTGAGATCGTCACGTGCTCTCACGTCGGTCACGTGTTCCGTAAAGCCACGCCGTACACGTTCCCCGGTGGAACTGGGCAGAtcatcaataaaaacaacagacgGCTGGCGGAGGTCTGGATGGATGAGTTCAAGAACTTCTTCTACATCATCTCACCTGgtgTGACGAAAGTGGATTATGGAGACATCTCATCCAGAACATCCCTGAGACAGAGACTGCAGTGTAAGCCGTTCTCCTGGTACCTAGAAAATGTCTACCCGGACTCCCAGATACCACGCCACTACTACTCGCTCGGAGAGATCCGTAATGTGGAGACTAACCAGTGTCTGGATAACATGGCCAggaaagagaatgaaaaagtGGGCATTTTCAACTGTCATGGCATGGGCGGCAACCAGGTTTTCTCGTACACAGCCAATAAAGAGATCCGGACTGATGACCTCTGTTTGGATGTGTCCAAACTCAATGGTCCCGTTATGATGCTCAAGTGCCATCACTTGAAAGGCAACCAGCTTTGGGAATATGACCCTGTGatttttaccCGCCCCTGGCAACATTTTCATTGGTTTAAAAAAGAGTTTGCGTGTATATCATGAAAtttcttttcataaaatataggcacaatttaattacattttgtattcattatgtaaatatttaaatgatatatttatgttagaGCTATAAGTcgataaaatgttttaatctgaTTAA
>XM_043249558.1
ctgtgtgtgtgtgtttcaggtgagAAGATGAGGAAGTTTGCGTACTGTAAGGTGGTGCTGGCCACCTCTCTGGTGTGGGTGATGCTAGACATGTTCATCCTCCTCTACTTCAGCGAATGCAACAAATGCGAtgacaaaaaagagagaggattGCCGGGGAGAGACACTGTTGTTCAAAGGCCTCACGACGGCCCGGGGGAGATGGGAAAGCCAGTGGTCATCGCTAAAGACCAACAGGAGAGGATGAAGGAAATGTTTAAGATAAACCAGTTTAACCTGATGGCCAGTGAGATGATTGCACTCAACAGATCTTTACCGGATGTTCGTCTTGAGGGGTGTAAAACGAAGGTGTATCCAGACGATCTCCCACGCACCAGTGTGGTGATTGTGTTTCATAATGAAGCGTGGACCACTCTGCTCCGAACGGTCCACAGCGTGATGGACAGGTCACCGAGACACCTGCTGGAGGAAATCGTGCTGGTGGATGACGCCAGTGAGAGAGaCTTCTTGAAGAGGCAGTTGGAGCAGTATGTGCGGAAGCTGGAGGTTCCTGTCAGGGTGGTACGGATGGAGCAGCGCTCGGGCCTGATTCGCGCTCGGTTGAAGGGGGCGTCCATCTCCACAGGTCAGGTGATTACCTTCCTGGATGCCCACTGTGAATGCACCACCGGCTGGCTGGAGCCTCTGCTCGCTCGCATCAAAATCGACAAGAAAACCGTGGTGTGTCCCATCATTGACGTGATCAGCGATGACACGTTTGAGTACATGGCAGGCTCTGATATGACATATGGTGGCTTCAACTGGAAGCTGAACTTCCGCTGGTATCCGGTAccacagagagagatggatcGCAGAAAAGGAGACAGAACGCTGCCTGTCAGGACCCCCACTATGGCAGGTGGTCTCTTCTCTATAGACAGAGATTATTTTCAGGAGATTGGCACGTACGATGCAGGCATGGACATTTGGGGAGGAGAGAACCTGGAGATCTCGTTTAGGATTTGGCAATGTGGGGGGACGCTTGAGATCGTCACGTGCTCTCACGTCGGTCACGTGTTCCGTAAAGCCACGCCGTACACGTTCCCCGGTGGAACTGGGCAGAtcatcaataaaaacaacagacgGCTGGCGGAGGTCTGGATGGATGAGTTCAAGAACTTCTTCTACATCATCTCACCTGgtgTGACGAAAGTGGATTATGGAGACATCTCATCCAGAACATCCCTGAGACAGAGACTGCAGTGTAAGCCGTTCTCCTGGTACCTAGAAAATGTCTACCCGGACTCCCAGATACCACGCCACTACTACTCGCTCGGAGAGATCCGTAATGTGGAGACTAACCAGTGTCTGGATAACATGGCCAggaaagagaatgaaaaagtGGGCATTTTCAACTGTCATGGCATGGGCGGCAACCAGGTTTTCTCGTACACAGCCAATAAAGAGATCCGGACTGATGACCTCTGTTTGGATGTGTCCAAACTCAATGGTCCCGTTATGATGCTCAAGTGCCATCACTTGAAAGGCAACCAGCTTTGGGAATATGACCCTGTGTATGTTGGCAAATGGGAGTATGACTTTAAGAAACATACCTTCCTGCACATCATCACCCAATCGTGTCTGACCATCAGTCGGCTGGAGGACGGGACATATGGCCCAACGGTGGAGTACTGTGACGATAGCCCCCTTCAGGCCTGGATCCTCCGAAACTTCACCCGGCAGGAGGTTTTTAAGAAGCTTTACTACAGCCCTACTGATTACTTTCTGTAACTTCCACAACTTCCTGTTGATG

Function

symbol description
galnt1 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNT1 (polypeptide N-acetylgalactosaminyltransferase 1).
galnt13 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNT13 (polypeptide N-acetylgalactosaminyltransferase 13).

NR:

description
polypeptide N-acetylgalactosaminyltransferase 1

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU99423 False 318 lncRNA 0.49 2 2807924 2810187
TU99433 False 1728 TUCP 0.49 9 2814935 2836623
XM_043249557.1 False 1735 mRNA 0.49 11 2811578 2838954
XM_043249558.1 True 1792 mRNA 0.51 12 2807926 2838954

Neighbor

gene id symbol gene type direction distance location
kcnj3a kcnj3,kcnj3a,LOC107657376,LOC107671326,LOC107566749 coding downstream 54113 2731077 ~ 2753811 (-)
LOC122352136 LOC107657377,LOC107548802,LOC107745258,LOC107567978,LOC107685425 coding downstream 443762 2343185 ~ 2364162 (-)
LOC122352172 LOC107657377,LOC107548802,LOC107745258,LOC107567978,LOC107685425,LOC107734490 coding downstream 527931 2263354 ~ 2279993 (-)
actr5 actr5,LOC107580973 coding downstream 1098820 1697719 ~ 1709104 (-)
upp2 upp2,LOC107699962,LOC107751513,LOC107653244,LOC107569728,LOC107568899,LOC107568900 coding downstream 1115640 1688877 ~ 1692284 (-)
LOC122351447 NA coding upstream 5007 2843961 ~ 2850550 (-)
LOC122351191 NA coding upstream 16235 2855189 ~ 2857329 (-)
chmp2ba chmp2ba,chmp2b,LOC107661322,LOC107551976,LOC107688654,LOC107561317,LOC107713700 coding upstream 70117 2909071 ~ 2919028 (-)
gtf2f2b gtf2f2b,gtf2f2,LOC107661326,LOC107748886,LOC108267015,LOC103042992,LOC107691617 coding upstream 118490 2957444 ~ 2973910 (-)
lacc1 lacc1,LOC107551973,LOC107748901,LOC107561313,LOC107688676,LOC107713702 coding upstream 206848 3045802 ~ 3053237 (-)
G67207 galnt13,LOC107671291,LOC107566748,LOC106586166 non-coding downstream 155088 2642931 ~ 2652836 (-)
G67169 NA non-coding downstream 434869 2372351 ~ 2373055 (-)
LOC122351507 LOC107734491,LOC107657377,LOC107548802,LOC107745258,LOC107685425,LOC107567978 non-coding downstream 584302 2220457 ~ 2223622 (-)
G67098 NA non-coding downstream 674252 2133452 ~ 2133672 (-)
G67081 NA non-coding downstream 720974 2086297 ~ 2086950 (-)
G67237 NA non-coding upstream 24016 2862970 ~ 2875640 (-)
G67243 NA non-coding upstream 68697 2907651 ~ 2907959 (-)
G67251 NA non-coding upstream 91054 2930008 ~ 2931220 (-)
G67274 LOC107748883,LOC107551985,LOC107713726,LOC107688648,LOC107576221 non-coding upstream 139375 2978329 ~ 2981319 (-)
G67288 tsc22d1,LOC107713726,LOC107551985 non-coding upstream 176259 3015213 ~ 3016513 (-)
LOC122352168 galnt13,LOC107657405,LOC107566748,LOC107671291,LOC107559530,LOC107745272 other downstream 9330 2763420 ~ 2798594 (-)
G67204 NA other downstream 178418 2627323 ~ 2629506 (-)
si:dkey-11f4.7 si:dkey-11f4.7,LOC107731100,LOC107699957 other downstream 954012 1736466 ~ 1853912 (-)
G66995 LOC107699959,LOC107731101,LOC107568897 other downstream 1148024 1353984 ~ 1659900 (-)
G66993 LOC107746588,LOC107568897 other downstream 1172953 1623833 ~ 1634971 (-)
serp2 NA other upstream 178089 3017043 ~ 3045307 (-)
G67358 gpx4a other upstream 350893 3189847 ~ 3194492 (-)
dgkh dgkh,LOC107713732,LOC107549907 other upstream 598802 3437756 ~ 3507292 (-)
G67668 NA other upstream 1281509 4120463 ~ 4122103 (-)
wipf1a LOC107657348,LOC107600727 other upstream 1303336 4142290 ~ 4150239 (-)

Expression


Co-expression Network