LOC122351269


Basic Information

Item Value
gene id LOC122351269
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 2917842 ~ 2924636 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU99463
GATACTTTGGCACGGCGAGGCTTGGCTCACCTTGGCACCAAGGTCAAGAGGACAAAGGCTCGAGAAGGACGGGAATCCAGCTCGACCGCGACGACAGCCTCAGACCGTTGCTGAACACACCGAGGGCTTCAGTAAGTATTAAAGCAAAGACGGGAAGCGAAGAATAAACATTTAAGAGCTCCGGCTCCCTGAGACTCTTGGGATTTATCCGTTCCTGAGGGCTACGCTTCTGCACAGCCATctggaggagaaggagagaCGAGGTTCAAGGAAAACTGTCACGAAGATAAATCCTGCCACGGATACAGTTCATTTCAAGAAGCTcgacattttattaataaaaaagacgTTTTGTATCTTGATTGTATCTTGACCTAATAAGCATCATGTCCCACTTTTTCAcagtttgaaaaataatgtaagCGTTTATTTGTGTTcctttttatgtcaaaaatcttttctaacaaagaaatgcaacatattttataaaaacagacTACAAAGTTAAGTCCGAACTCGTCATGTTTAGACTCCACTCACCCTTTATCAGAAAGCACATCATTCAGGCCTTTTTAATACTGGTGCAGAAAATGGTCAGTACTATCATActcctttcatttttttgaggtctattaacattttattttaatctactagtatatagatatatatatatatatagctcccATCATTACAGGATTTTAAGAgtacttaatttattaaacgttgtatttaaaatatagaaaagagTCGTGGTAAATATGCACTTACCAAAACTAAGTCACACCTTGATTCATGAATATATTTAGGGAAAAGTATATAACAAATGTCTAGTATGTGAGACTGGATTTAGATCTTATCTTCGGTGTCTGGCAGATTTTGATAACGTCAGTTAATCTCCGTCTTCATTGGTGAGTGAAGTAACGCAGCACCAACAAAGTTGCTGTGTTTCtctaatttgcatttaattgagGGTTAATGCCACTGAACCTCTGGACAGAAGACTTCTCTTCTCACATGCAAAGGTCTTGTCTGGAGTGATTGTGTTTAGATGGCGTAATACATCACCTGTGCTACACCTGTGACGACTTCCACGGTCGATGATGAATACAGCTGAAACACTGCAGCATTCTCCTTTCAGCtgaactaaatatatttttctcattcatgaattttcttttttacagcaAGTGGATGTATTTAATGAGTTGAGCAAAAGTTGTCCCCTACTCTGTAATCACAAGTGCTGTCACTGACTATTAAAAACCTCTTTCCGTCGACCTCTAACCTCTCCTTCCATCTAGaattaacaaatgaattaactttgttttaaattctattgACACCCTGCGGTGCCGCGGCTCCGAAAGTGATATAGAAGCGACTGAATGTAACACAATGGCTTTTTACTctaaagataataaaaagaacaggGGAAGATAATGATCACgctttattttagtgtttttttcctttgttctcAAGTAAAATGCCTCCACCACGCGAgggatttattaaaatgtgtatcaGTGGAATAGTAGCCTTTGAAGCATCCTTTGTGGTCTGTGTGGCAGAGAGAGAACTGATTCATTGCTATAGCTCCTCTGTGTTTCCTGCTCAGATGATTATGAAGAAAATGATGAACGTGATAAGAATTATCAGAAGAGTT
>XR_006251721.1
ACCAGCTCTGCCATCTGAGAGGATACTTTGGCACGGCGAGGCTTGGCTCACCTTGGCACCAAGGTCAAGAGGACAAAGGCTCGAGAAGGACGGGAATCCAGCTCGACCGCGACGACAGCCTCAGACCGTTGCTGAACACACCGAGGGCTTCAGTAAGTATTAAAGCAAAGACGGGAAGCGAAGAATAAACATTTAAGAGCTCCGGCTCCCTGAGACTCTTGGGATTTATCCGTTCCTGAGGGCTACGCTTCTGCACAGCCATctggaggagaaggagagaCGAGGTTCAAGGAAAACTGTCACGAAGATAAATCCTGCCACGGATACAGTTCATTTCAAGAAGCTcgacattttattaataaaaaagacgTTTTGTATCTTGATTGTATCTTGACCTAATAAGCATCATGTCCCACTTTTTCAcagtttgaaaaataatgtaagCGTTTATTTGTGTTcctttttatgtcaaaaatcttttctaacaaagaaatgcaacatattttataaaaacagacTACAAAGTTAAGTCCGAACTCGTCATGTTTAGACTCCACTCACCCTTTATCAGAAAGCACATCATTCAGGCCTTTTTAATACTGGTGCAGAAAATGGTCAGTACTATCATActcctttcatttttttgaggtctattaacattttattttaatctactagtatatagatatatatatatatatagctcccATCATTACAGGATTTTAAGAgtacttaatttattaaacgttgtatttaaaatatagaaaagagTCGTGGTAAATATGCACTTACCAAAACTAAGTCACACCTTGATTCATGAATATATTTAGGGAAAAGTATATAACAAATGTCTAGTATGTGAGACTGGATTTAGATCTTATCTTCGGTGTCTGGCAGATTTTGATAACGTCAGTTAATCTCCGTCTTCATTGGTGAGTGAAGTAACGCAGCACCAACAAAGTTGCTGTGTTTCtctaatttgcatttaattgagGGTTAATGCCACTGAACCTCTGGACAGAAGACTTCTCTTCTCACATGCAAAGGTCTTGTCTGGAGTGATTGTGTTTAGATGGCGTAATACATCACCTGTGCTACACCTGTGACGACTTCCACGGTCGATGATGAATACAGCTGAAACACTGCAGCATTCTCCTTTCAGCtgaactaaatatatttttctcattcatgaattttcttttttacagcaAGTGGATGTATTTAATGAGTTGAGCAAAAGTTGTCCCCTACTCTGTAATCACAAGTGCTGTCACTGACTATTAAAAACCTCTTTCCGTCGACCTCTAACCTCTCCTTCCATCTAGaattaacaaatgaattaactttgttttaaattctattgACACCCTGCGGTGCCGCGGCTCCGAAAGTGATATAGAAGCGACTGAATGTAACACAATGGCTTTTTACTctaaagataataaaaagaacaggGGAAGATAATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99463 True 1669 lncRNA 0.38 2 2917863 2924636
XR_006251721.1 False 1467 lncRNA 0.39 2 2917842 2924413

Neighbor

gene id symbol gene type direction distance location
pou1f1 pou1f1,LOC107561319,LOC107688653,LOC107661330,LOC107551978 coding upstream 9709 2899163 ~ 2908133 (+)
nr4a2a nr4a2a,LOC107657406,LOC107734489,LOC107745273,LOC107572156 coding upstream 418544 2494481 ~ 2499298 (+)
LOC122351218 cytip,LOC107745276,LOC107567979,LOC107685429,LOC107734494,LOC107657378,LOC107548784 coding upstream 659227 2254557 ~ 2258615 (+)
LOC122351505 LOC107734497,LOC107657409,LOC107548806,LOC107685428,LOC107745260,LOC107567977,LOC107657408,LOC107734493 coding upstream 716128 2145505 ~ 2201714 (+)
ndufa4l2a ndufa4l2a,ndufa4l2,LOC107678808,LOC107571901,LOC108434410,LOC100690915 coding upstream 1052235 1861809 ~ 1865607 (+)
vgll3 LOC107561316 coding downstream 1730 2926366 ~ 2930420 (+)
kctd4 kctd4,LOC107748885,LOC107688678,LOC107713709,LOC107580010 coding downstream 41410 2966046 ~ 2967965 (+)
tsc22d1 tsc22d1,LOC107551985,LOC107748883,LOC107713726,LOC107576221,LOC107561310,LOC107688650 coding downstream 53671 2978307 ~ 3016509 (+)
enox1 enox1,LOC107661308,LOC107713727,LOC107561323,LOC107688647 coding downstream 129726 3054362 ~ 3137945 (+)
epsti1 epsti1,LOC107549908 coding downstream 439098 3363734 ~ 3384177 (+)
G67187 NA non-coding upstream 263366 2641619 ~ 2654476 (+)
G67097 NA non-coding upstream 785446 2131962 ~ 2132396 (+)
G67065 NA non-coding upstream 831037 2086282 ~ 2086805 (+)
G67064 ndufa4l2a,ndufa4l2,LOC107678808,LOC107571901,LOC108434410,LOC100690915 non-coding upstream 831664 1861854 ~ 2086178 (+)
LOC122351258 NA non-coding downstream 30708 2955344 ~ 2957198 (+)
G67296 NA non-coding downstream 127858 3052494 ~ 3053222 (+)
G67347 NA non-coding downstream 460994 3385630 ~ 3385950 (+)
G67348 NA non-coding downstream 462336 3386972 ~ 3387192 (+)
G67389 NA non-coding downstream 494451 3419087 ~ 3424421 (+)
bpifcl bpi other upstream 1181522 1713812 ~ 1736320 (+)
G66795 NA other upstream 1782853 1127526 ~ 1134989 (+)
LOC122351650 si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 other upstream 2018463 858680 ~ 899379 (+)
G66727 fam126b,LOC107700963 other upstream 2112833 797133 ~ 805009 (+)
G66657 NA other upstream 2455813 459574 ~ 462029 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other downstream 270137 3194773 ~ 3196618 (+)
LOC122351398 dnajc15,LOC107549910 other downstream 337971 3262607 ~ 3280052 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other downstream 989002 3913638 ~ 3922878 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other downstream 1023400 3948036 ~ 3983582 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other downstream 1056710 3981346 ~ 3985962 (+)

Expression


Co-expression Network